AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034931

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034931 MtrunA17_Chr1g0167311 88.889 198 14 1 1 198 151 340 4.24e-126 367
MsaG034931 MtrunA17_Chr1g0167351 82.323 198 27 1 1 198 146 335 4.71e-117 345
MsaG034931 MtrunA17_Chr1g0187581 74.747 198 41 2 1 198 153 341 8.63e-107 318
MsaG034931 MtrunA17_Chr1g0183651 73.737 198 42 3 1 198 156 343 3.16e-103 310
MsaG034931 MtrunA17_Chr7g0261491 74.242 198 41 3 1 198 156 343 1.34e-102 309
MsaG034931 MtrunA17_Chr2g0299781 63.415 205 60 4 1 198 149 345 2.33e-84 260
MsaG034931 MtrunA17_Chr3g0135951 61.809 199 73 3 1 198 130 326 1.43e-82 256
MsaG034931 MtrunA17_Chr1g0153321 61.616 198 68 3 1 198 144 333 5.86e-81 252
MsaG034931 MtrunA17_Chr4g0018201 40.099 202 93 5 1 198 795 972 1.15e-36 137
MsaG034931 MtrunA17_Chr5g0428981 39.604 202 94 5 1 198 799 976 1.79e-36 136
MsaG034931 MtrunA17_Chr6g0478601 38.000 200 101 4 1 198 147 325 1.62e-35 132
MsaG034931 MtrunA17_Chr4g0059751 29.798 198 88 2 1 198 132 278 4.95e-28 110
MsaG034931 MtrunA17_Chr1g0197721 46.018 113 61 0 6 118 92 204 1.44e-27 110
MsaG034931 MtrunA17_Chr4g0030361 34.146 205 95 5 1 197 345 517 1.26e-26 108
MsaG034931 MtrunA17_Chr2g0309421 30.702 228 120 6 1 197 213 433 1.33e-26 107
MsaG034931 MtrunA17_Chr7g0245031 28.283 198 91 2 1 198 184 330 7.77e-25 102
MsaG034931 MtrunA17_Chr2g0327561 32.524 206 108 4 1 197 664 847 2.60e-24 101
MsaG034931 MtrunA17_Chr8g0369091 30.144 209 101 3 1 197 635 810 4.36e-24 100
MsaG034931 MtrunA17_Chr1g0179101 27.854 219 134 3 4 198 511 729 2.07e-23 99.0
MsaG034931 MtrunA17_Chr7g0227331 28.509 228 129 6 3 198 272 497 4.94e-23 97.8
MsaG034931 MtrunA17_Chr8g0335351 29.515 227 124 5 1 197 408 628 1.60e-22 96.3
MsaG034931 MtrunA17_Chr7g0266031 28.378 222 129 5 4 198 533 751 2.25e-22 95.9
MsaG034931 MtrunA17_Chr2g0312641 28.141 199 134 3 1 197 132 323 1.37e-21 93.2
MsaG034931 MtrunA17_Chr3g0080101 28.319 226 132 6 1 198 453 676 1.39e-21 93.6
MsaG034931 MtrunA17_Chr2g0290691 27.391 230 133 4 1 198 242 469 3.72e-21 92.0
MsaG034931 MtrunA17_Chr8g0356291 26.457 223 136 4 1 197 165 385 4.97e-21 91.7
MsaG034931 MtrunA17_Chr7g0250631 28.440 218 133 3 3 197 404 621 1.75e-20 90.5
MsaG034931 MtrunA17_Chr4g0063311 27.948 229 124 5 4 198 137 358 7.39e-20 88.2
MsaG034931 MtrunA17_Chr8g0338741 26.667 210 134 5 5 198 70 275 3.32e-19 85.9
MsaG034931 MtrunA17_Chr2g0321101 25.210 238 120 5 1 198 130 349 1.19e-18 84.7
MsaG034931 MtrunA17_Chr2g0285711 27.500 200 125 4 13 198 137 330 1.03e-17 82.0
MsaG034931 MtrunA17_Chr4g0013131 28.141 199 93 4 1 198 48 197 1.69e-17 81.3
MsaG034931 MtrunA17_Chr1g0188991 37.864 103 62 1 10 110 58 160 2.84e-17 80.9
MsaG034931 MtrunA17_Chr4g0074111 28.141 199 93 5 1 198 54 203 3.40e-17 80.1
MsaG034931 MtrunA17_Chr7g0234641 24.638 207 143 3 5 198 60 266 4.30e-17 80.1
MsaG034931 MtrunA17_Chr8g0381091 28.000 200 126 5 13 198 133 328 7.11e-17 79.3
MsaG034931 MtrunA17_Chr2g0304111 26.842 190 91 3 1 190 59 200 1.84e-16 78.2
MsaG034931 MtrunA17_Chr4g0032761 24.171 211 136 5 11 197 68 278 2.78e-16 77.4
MsaG034931 MtrunA17_Chr2g0284031 28.643 199 92 5 1 198 67 216 2.88e-16 77.8
MsaG034931 MtrunA17_Chr8g0379091 29.146 199 91 6 1 198 62 211 7.54e-16 76.6
MsaG034931 MtrunA17_Chr3g0125381 30.994 171 68 4 25 195 12 132 1.26e-15 73.6
MsaG034931 MtrunA17_Chr4g0063881 28.141 199 92 4 1 198 47 195 1.46e-15 75.5
MsaG034931 MtrunA17_Chr5g0432491 25.888 197 97 4 3 198 61 209 2.07e-15 75.1
MsaG034931 MtrunA17_Chr8g0351491 42.857 84 48 0 25 108 76 159 4.75e-15 72.8
MsaG034931 MtrunA17_Chr2g0284011 28.141 199 93 5 1 198 48 197 4.86e-15 73.9
MsaG034931 MtrunA17_Chr7g0244521 28.205 195 90 4 5 198 52 197 5.01e-15 73.9
MsaG034931 MtrunA17_Chr3g0107011 26.131 199 97 4 1 198 50 199 6.14e-15 73.9
MsaG034931 MtrunA17_Chr2g0286501 32.727 110 74 0 4 113 82 191 7.04e-15 73.9
MsaG034931 MtrunA17_Chr6g0453681 29.661 118 83 0 8 125 62 179 1.17e-14 73.2
MsaG034931 MtrunA17_Chr2g0330211 30.894 123 83 1 3 123 55 177 1.45e-14 72.8
MsaG034931 MtrunA17_Chr3g0140631 31.746 126 83 2 2 126 73 196 1.46e-14 71.6
MsaG034931 MtrunA17_Chr6g0468751 29.661 118 83 0 8 125 62 179 1.51e-14 72.8
MsaG034931 MtrunA17_Chr1g0188031 37.647 85 53 0 25 109 82 166 2.63e-14 72.0
MsaG034931 MtrunA17_Chr5g0441011 26.633 199 97 4 1 198 49 199 2.66e-14 72.0
MsaG034931 MtrunA17_Chr1g0205421 26.316 190 91 4 1 190 48 188 4.44e-14 71.2
MsaG034931 MtrunA17_Chr3g0107051 26.154 195 94 4 5 198 61 206 6.79e-14 70.5
MsaG034931 MtrunA17_Chr8g0353621 39.286 84 51 0 25 108 70 153 1.00e-13 68.9
MsaG034931 MtrunA17_Chr5g0428031 26.316 190 89 3 10 198 54 193 1.33e-13 69.7
MsaG034931 MtrunA17_Chr7g0272841 30.275 109 76 0 3 111 111 219 1.52e-13 69.7
MsaG034931 MtrunA17_Chr8g0386981 34.862 109 71 0 3 111 448 556 1.60e-13 70.1
MsaG034931 MtrunA17_Chr5g0432471 26.289 194 93 4 6 198 53 197 2.32e-13 69.3
MsaG034931 MtrunA17_Chr5g0419441 33.913 115 73 2 2 113 272 386 2.37e-13 69.3
MsaG034931 MtrunA17_Chr2g0317001 33.333 111 74 0 3 113 51 161 2.61e-13 69.3
MsaG034931 MtrunA17_Chr3g0132671 29.310 116 82 0 10 125 94 209 2.78e-13 68.9
MsaG034931 MtrunA17_Chr8g0346081 30.275 109 76 0 1 109 53 161 3.22e-13 68.6
MsaG034931 MtrunA17_Chr7g0274941 37.647 85 51 2 25 108 77 160 3.34e-13 67.8
MsaG034931 MtrunA17_Chr8g0346071 30.000 110 77 0 1 110 53 162 3.57e-13 68.6
MsaG034931 MtrunA17_Chr6g0453671 28.571 119 85 0 8 126 62 180 9.55e-13 67.0
MsaG034931 MtrunA17_Chr4g0008561 30.579 121 81 1 8 125 61 181 1.17e-12 67.4
MsaG034931 MtrunA17_Chr4g0001331 27.979 193 89 5 7 198 62 205 1.41e-12 66.6
MsaG034931 MtrunA17_Chr3g0130151 34.314 102 67 0 16 117 297 398 1.51e-12 67.0
MsaG034931 MtrunA17_Chr3g0114511 34.862 109 68 2 1 109 68 173 2.43e-12 66.2
MsaG034931 MtrunA17_Chr6g0450571 30.392 102 69 1 10 109 59 160 2.64e-12 66.2
MsaG034931 MtrunA17_Chr4g0000431 32.353 102 67 1 10 109 67 168 2.98e-12 66.2
MsaG034931 MtrunA17_Chr8g0345801 27.586 116 81 1 13 125 62 177 3.84e-12 64.7
MsaG034931 MtrunA17_Chr3g0129721 30.252 119 80 1 10 125 69 187 3.86e-12 64.7
MsaG034931 MtrunA17_Chr1g0150321 27.692 195 91 5 5 198 53 198 3.88e-12 65.5
MsaG034931 MtrunA17_Chr1g0202831 34.314 102 67 0 10 111 458 559 4.74e-12 65.5
MsaG034931 MtrunA17_Chr5g0405421 31.818 110 69 3 7 110 141 250 1.05e-11 64.3
MsaG034931 MtrunA17_Chr3g0142411 90.909 33 3 0 199 231 273 305 1.10e-11 64.3
MsaG034931 MtrunA17_Chr1g0156371 90.909 33 3 0 199 231 254 286 1.33e-11 64.3
MsaG034931 MtrunA17_Chr2g0299801 75.862 29 7 0 169 197 1 29 1.97e-11 58.5
MsaG034931 MtrunA17_Chr5g0424501 29.204 113 79 1 7 119 235 346 2.81e-11 62.8
MsaG034931 MtrunA17_Chr1g0166101 36.471 85 54 0 25 109 85 169 3.10e-11 62.8
MsaG034931 MtrunA17_Chr5g0443471 30.000 120 81 1 6 122 203 322 3.47e-11 62.8
MsaG034931 MtrunA17_Chr5g0424581 29.204 113 79 1 7 119 168 279 3.52e-11 62.4
MsaG034931 MtrunA17_Chr5g0424651 29.204 113 79 1 7 119 364 475 3.92e-11 62.8
MsaG034931 MtrunA17_Chr1g0205931 27.523 109 79 0 3 111 98 206 4.06e-11 62.8
MsaG034931 MtrunA17_Chr2g0326531 35.000 80 52 0 38 117 200 279 5.18e-11 62.0
MsaG034931 MtrunA17_Chr2g0299861 73.333 30 8 0 169 198 1 30 6.75e-11 57.4
MsaG034931 MtrunA17_Chr5g0396361 34.783 115 68 4 2 110 173 286 7.10e-11 62.0
MsaG034931 MtrunA17_Chr8g0384301 34.343 99 65 0 13 111 349 447 7.15e-11 62.0
MsaG034931 MtrunA17_Chr4g0051191 31.373 102 69 1 10 111 210 310 7.81e-11 61.6
MsaG034931 MtrunA17_Chr3g0091311 28.906 128 88 2 1 126 48 174 8.24e-11 60.5
MsaG034931 MtrunA17_Chr3g0091291 32.323 99 66 1 11 109 6 103 8.48e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034931 AT4G14350.2 74.747 198 41 2 1 198 155 343 3.26e-105 315
MsaG034931 AT4G14350.1 74.747 198 41 2 1 198 155 343 3.26e-105 315
MsaG034931 AT4G14350.4 74.747 198 41 2 1 198 155 343 3.26e-105 315
MsaG034931 AT4G14350.3 74.747 198 41 2 1 198 155 343 3.38e-105 315
MsaG034931 AT3G23310.1 74.000 200 41 3 1 198 156 346 2.52e-103 311
MsaG034931 AT2G20470.3 68.687 198 51 2 1 198 160 346 4.63e-97 294
MsaG034931 AT2G20470.2 68.687 198 51 2 1 198 160 346 1.49e-96 293
MsaG034931 AT2G20470.1 68.687 198 51 2 1 198 160 346 1.49e-96 293
MsaG034931 AT1G03920.2 70.202 198 49 3 1 198 60 247 1.26e-94 285
MsaG034931 AT1G03920.1 70.202 198 49 3 1 198 173 360 8.20e-94 286
MsaG034931 AT1G03920.3 70.202 198 49 3 1 198 173 360 8.20e-94 286
MsaG034931 AT2G19400.1 63.547 203 63 3 1 198 141 337 1.28e-82 256
MsaG034931 AT4G33080.2 61.576 203 67 3 1 198 130 326 1.57e-82 256
MsaG034931 AT4G33080.1 61.576 203 67 3 1 198 130 326 1.60e-82 256
MsaG034931 AT1G30640.3 60.199 201 69 3 1 198 63 255 6.97e-81 250
MsaG034931 AT1G30640.2 60.199 201 69 3 1 198 156 348 1.70e-80 252
MsaG034931 AT1G30640.1 60.199 201 69 3 1 198 156 348 1.70e-80 252
MsaG034931 AT5G09890.2 63.682 201 61 5 1 198 138 329 1.89e-80 251
MsaG034931 AT5G09890.1 63.682 201 61 5 1 198 138 329 1.92e-80 251
MsaG034931 AT5G62310.1 41.919 198 96 6 1 198 790 968 4.67e-38 141
MsaG034931 AT3G17850.1 39.000 200 99 5 1 198 918 1096 7.22e-36 135
MsaG034931 AT1G48490.4 37.374 198 99 3 1 198 865 1037 3.39e-35 133
MsaG034931 AT1G48490.3 37.374 198 99 3 1 198 864 1036 3.62e-35 133
MsaG034931 AT1G48490.2 37.374 198 99 3 1 198 864 1036 3.62e-35 133
MsaG034931 AT1G48490.1 37.374 198 99 3 1 198 864 1036 3.62e-35 133
MsaG034931 AT1G45160.2 37.374 198 101 4 1 198 706 880 3.36e-33 127
MsaG034931 AT1G45160.1 36.869 198 102 3 1 198 706 880 3.47e-33 127
MsaG034931 AT5G04510.3 45.133 113 62 0 6 118 85 197 9.06e-28 108
MsaG034931 AT5G04510.2 45.133 113 62 0 6 118 85 197 1.33e-27 109
MsaG034931 AT5G04510.1 45.133 113 62 0 6 118 85 197 1.90e-27 110
MsaG034931 AT3G10540.1 45.133 113 62 0 6 118 86 198 7.94e-27 108
MsaG034931 AT3G08730.1 28.283 198 91 2 1 198 170 316 2.82e-25 103
MsaG034931 AT3G08730.2 28.283 198 91 2 1 198 170 316 2.82e-25 103
MsaG034931 AT3G08720.1 28.283 198 91 2 1 198 176 322 3.30e-25 103
MsaG034931 AT3G08720.3 28.283 198 91 2 1 198 176 322 3.30e-25 103
MsaG034931 AT3G08720.4 28.283 198 91 2 1 198 176 322 3.30e-25 103
MsaG034931 AT3G08720.2 28.283 198 91 2 1 198 176 322 3.30e-25 103
MsaG034931 AT1G79250.1 28.125 224 135 3 1 198 182 405 3.62e-25 103
MsaG034931 AT1G79250.3 28.125 224 135 3 1 198 182 405 3.62e-25 103
MsaG034931 AT1G79250.2 28.125 224 135 3 1 198 182 405 3.62e-25 103
MsaG034931 AT1G79250.4 28.125 224 135 3 1 198 182 405 3.62e-25 103
MsaG034931 AT5G55910.2 30.568 229 126 6 1 198 145 371 1.26e-24 102
MsaG034931 AT5G55910.1 30.568 229 126 6 1 198 145 371 1.26e-24 102
MsaG034931 AT3G45780.2 32.195 205 104 5 1 197 699 876 6.58e-24 100
MsaG034931 AT3G45780.1 32.195 205 104 5 1 197 699 876 6.58e-24 100
MsaG034931 AT5G58140.3 31.156 199 112 3 1 197 613 788 7.85e-24 100
MsaG034931 AT5G58140.6 31.156 199 112 3 1 197 613 788 8.59e-24 100
MsaG034931 AT5G58140.7 31.156 199 112 3 1 197 613 788 8.59e-24 100
MsaG034931 AT5G58140.5 31.156 199 112 3 1 197 613 788 8.59e-24 100
MsaG034931 AT5G58140.2 31.156 199 112 3 1 197 613 788 8.59e-24 100
MsaG034931 AT5G58140.1 31.156 199 112 3 1 197 613 788 8.59e-24 100
MsaG034931 AT1G16440.1 28.182 220 127 5 1 198 151 361 1.44e-23 99.4
MsaG034931 AT3G52890.2 30.435 230 123 7 4 198 577 804 3.74e-23 98.6
MsaG034931 AT3G52890.4 30.435 230 123 7 4 198 577 804 3.74e-23 98.6
MsaG034931 AT3G52890.1 30.435 230 123 7 4 198 577 804 3.74e-23 98.6
MsaG034931 AT3G52890.3 30.435 230 123 7 4 198 577 804 3.74e-23 98.6
MsaG034931 AT5G47750.1 28.821 229 129 7 1 198 227 452 4.74e-23 98.2
MsaG034931 AT4G26610.1 28.251 223 135 3 1 198 159 381 5.55e-23 97.4
MsaG034931 AT2G36350.1 28.696 230 125 7 4 198 598 823 7.74e-23 97.8
MsaG034931 AT3G27580.2 28.761 226 131 5 1 198 218 441 3.49e-22 95.5
MsaG034931 AT3G27580.1 28.761 226 131 5 1 198 218 441 3.49e-22 95.5
MsaG034931 AT3G44610.1 25.664 226 138 4 1 198 115 338 1.59e-21 93.2
MsaG034931 AT3G12690.1 26.457 223 130 6 1 198 221 434 2.47e-21 93.2
MsaG034931 AT3G12690.3 26.457 223 130 6 1 198 221 434 2.47e-21 93.2
MsaG034931 AT3G12690.2 26.457 223 130 6 1 198 221 434 2.47e-21 93.2
MsaG034931 AT2G44830.2 27.273 220 134 3 4 197 402 621 1.86e-20 90.5
MsaG034931 AT2G44830.3 27.273 220 134 3 4 197 402 621 1.86e-20 90.5
MsaG034931 AT2G44830.1 27.273 220 134 3 4 197 402 621 1.86e-20 90.5
MsaG034931 AT2G34650.1 29.474 190 127 3 13 197 128 315 2.66e-20 89.7
MsaG034931 AT3G20830.1 31.414 191 117 6 20 197 79 268 2.68e-20 89.4
MsaG034931 AT3G14370.1 25.541 231 153 4 10 224 133 360 9.84e-20 88.2
MsaG034931 AT5G03640.2 27.948 229 124 6 4 197 580 802 2.05e-19 87.8
MsaG034931 AT5G03640.1 27.948 229 124 6 4 197 580 802 2.05e-19 87.8
MsaG034931 AT4G13000.1 26.570 207 130 5 3 198 59 254 2.65e-19 86.3
MsaG034931 AT5G40030.1 26.457 223 136 7 1 198 150 369 4.50e-19 86.3
MsaG034931 AT1G53700.1 23.618 199 145 2 1 197 130 323 1.99e-18 84.3
MsaG034931 AT4G24400.2 27.638 199 93 3 1 198 45 193 3.30e-18 83.6
MsaG034931 AT4G24400.1 27.638 199 93 3 1 198 45 193 3.70e-18 83.6
MsaG034931 AT2G26700.1 37.374 99 60 1 13 109 137 235 7.77e-18 82.8
MsaG034931 AT1G51170.1 29.327 208 130 6 2 197 65 267 2.37e-17 80.9
MsaG034931 AT2G45490.2 39.216 102 60 1 25 126 82 181 1.23e-16 77.4
MsaG034931 AT2G45490.1 39.216 102 60 1 25 126 82 181 1.85e-16 77.4
MsaG034931 AT5G25110.1 28.718 195 89 4 5 198 83 228 4.66e-16 77.4
MsaG034931 AT1G30270.1 26.131 199 98 4 1 198 67 217 4.84e-16 77.4
MsaG034931 AT5G45810.1 28.141 199 93 5 1 198 64 213 5.81e-16 77.4
MsaG034931 AT1G30270.2 26.131 199 98 4 1 198 67 217 6.31e-16 77.0
MsaG034931 AT4G14580.1 29.143 175 75 3 25 198 82 208 1.05e-15 76.3
MsaG034931 AT4G18700.1 28.421 190 87 4 1 190 62 202 1.59e-15 75.9
MsaG034931 AT5G10930.1 28.141 199 93 4 1 198 49 198 1.64e-15 75.9
MsaG034931 AT2G26980.4 27.136 199 96 4 1 198 60 210 1.66e-15 75.9
MsaG034931 AT2G26980.3 27.136 199 96 4 1 198 50 200 1.80e-15 75.9
MsaG034931 AT2G26980.1 27.136 199 96 4 1 198 50 200 1.90e-15 75.5
MsaG034931 AT5G18700.1 35.294 102 66 0 13 114 46 147 2.20e-15 75.9
MsaG034931 AT5G35410.2 33.333 126 83 1 1 125 47 172 2.41e-15 75.1
MsaG034931 AT5G35410.1 33.333 126 83 1 1 125 47 172 2.44e-15 75.5
MsaG034931 AT3G25250.1 27.411 197 131 4 10 198 69 261 2.53e-15 75.1
MsaG034931 AT2G26980.5 27.136 199 96 4 1 198 50 200 3.49e-15 74.7
MsaG034931 AT2G26980.2 27.136 199 96 4 1 198 50 200 4.14e-15 73.2
MsaG034931 AT1G30270.3 29.630 162 65 4 38 198 7 120 4.52e-15 74.3
MsaG034931 AT2G25090.1 26.738 187 96 2 4 190 55 200 5.91e-15 74.3
MsaG034931 AT5G58380.1 27.692 195 91 3 5 198 52 197 6.00e-15 74.3
MsaG034931 AT1G54960.1 31.193 109 75 0 3 111 111 219 6.36e-15 74.3
MsaG034931 AT1G54960.2 31.193 109 75 0 3 111 111 219 6.36e-15 74.3
MsaG034931 AT5G45820.1 28.718 195 89 4 5 198 52 197 6.44e-15 73.9
MsaG034931 AT5G01810.1 28.141 199 93 4 1 198 48 197 6.59e-15 73.9
MsaG034931 AT5G01810.2 28.141 199 93 4 1 198 48 197 6.59e-15 73.9
MsaG034931 AT5G01810.3 28.141 199 93 4 1 198 48 197 8.85e-15 73.6
MsaG034931 AT1G29230.1 26.842 190 90 3 1 190 110 250 1.72e-14 72.8
MsaG034931 AT4G30960.1 27.979 193 89 5 7 198 66 209 1.76e-14 72.8
MsaG034931 AT1G49180.2 31.496 127 84 1 2 125 43 169 2.15e-14 72.4
MsaG034931 AT3G01090.3 30.508 118 82 0 8 125 62 179 2.46e-14 72.4
MsaG034931 AT3G01090.1 30.508 118 82 0 8 125 62 179 2.46e-14 72.4
MsaG034931 AT3G01090.2 30.508 118 82 0 8 125 85 202 2.61e-14 72.4
MsaG034931 AT1G49180.1 31.496 127 84 1 2 125 43 169 2.69e-14 72.0
MsaG034931 AT1G01140.2 24.870 193 96 2 7 198 61 205 4.34e-14 71.6
MsaG034931 AT3G23000.1 29.143 175 74 4 25 198 86 211 4.46e-14 71.6
MsaG034931 AT1G01140.1 24.870 193 96 2 7 198 61 205 4.61e-14 71.6
MsaG034931 AT1G01140.3 24.870 193 96 2 7 198 61 205 4.92e-14 71.6
MsaG034931 AT1G09000.1 30.275 109 76 0 3 111 112 220 8.45e-14 70.9
MsaG034931 AT1G09000.2 30.275 109 76 0 3 111 112 220 9.39e-14 70.9
MsaG034931 AT2G30360.1 24.737 190 94 3 10 198 67 208 1.80e-13 69.7
MsaG034931 AT3G29160.3 27.966 118 85 0 8 125 63 180 2.87e-13 68.9
MsaG034931 AT4G24100.1 31.373 102 68 1 10 109 76 177 3.35e-13 69.3
MsaG034931 AT4G24100.4 31.373 102 68 1 10 109 92 193 3.40e-13 69.3
MsaG034931 AT4G24100.2 31.373 102 68 1 10 109 76 177 3.64e-13 69.3
MsaG034931 AT4G24100.3 31.373 102 68 1 10 109 92 193 3.70e-13 69.3
MsaG034931 AT3G29160.1 27.966 118 85 0 8 125 63 180 3.84e-13 68.9
MsaG034931 AT3G29160.2 27.966 118 85 0 8 125 63 180 3.84e-13 68.9
MsaG034931 AT4G10730.1 31.373 102 68 1 10 109 90 191 4.08e-13 68.9
MsaG034931 AT4G10730.2 31.373 102 68 1 10 109 70 171 4.16e-13 68.9
MsaG034931 AT5G21326.1 25.126 199 100 3 1 198 49 199 6.09e-13 68.2
MsaG034931 AT2G25880.1 30.952 126 84 2 2 126 61 184 7.51e-13 67.0
MsaG034931 AT4G32830.1 30.952 126 84 2 2 126 67 190 7.65e-13 67.4
MsaG034931 AT1G63700.1 32.110 109 74 0 3 111 440 548 8.69e-13 68.2
MsaG034931 AT1G63700.2 32.110 109 74 0 3 111 440 548 8.69e-13 68.2
MsaG034931 AT3G61960.1 27.586 116 81 1 13 125 57 172 8.98e-13 67.8
MsaG034931 AT2G25880.4 33.333 108 71 1 2 108 74 181 9.60e-13 67.0
MsaG034931 AT3G61960.2 27.586 116 81 1 13 125 57 172 1.07e-12 67.8
MsaG034931 AT5G14720.1 31.373 102 68 1 10 109 59 160 1.29e-12 67.4
MsaG034931 AT5G14720.2 31.373 102 68 1 10 109 59 160 1.29e-12 67.4
MsaG034931 AT1G70430.1 31.481 108 72 1 4 109 53 160 1.34e-12 67.4
MsaG034931 AT1G70430.4 31.481 108 72 1 4 109 53 160 1.45e-12 67.4
MsaG034931 AT1G70430.3 31.481 108 72 1 4 109 53 160 1.47e-12 67.4
MsaG034931 AT2G25880.3 33.333 108 71 1 2 108 122 229 1.63e-12 66.6
MsaG034931 AT3G06030.1 29.358 109 77 0 3 111 111 219 1.77e-12 67.0
MsaG034931 AT4G14480.1 30.275 109 74 1 3 109 52 160 2.17e-12 66.6
MsaG034931 AT2G37840.1 28.926 121 83 1 8 125 54 174 2.25e-12 67.0
MsaG034931 AT1G53570.7 35.294 102 66 0 10 111 261 362 2.90e-12 66.2
MsaG034931 AT1G53570.6 35.294 102 66 0 10 111 261 362 2.98e-12 66.2
MsaG034931 AT1G53570.2 35.294 102 66 0 10 111 261 362 3.13e-12 66.2
MsaG034931 AT1G53570.3 35.294 102 66 0 10 111 261 362 3.13e-12 66.2
MsaG034931 AT1G53570.1 36.364 99 63 0 13 111 264 362 3.19e-12 66.2
MsaG034931 AT1G53570.4 35.294 102 66 0 10 111 261 362 3.25e-12 66.2
MsaG034931 AT5G21222.1 29.358 109 77 0 1 109 49 157 4.38e-12 65.9
MsaG034931 AT5G21222.2 29.358 109 77 0 1 109 49 157 4.38e-12 65.9
MsaG034931 AT5G21222.4 29.358 109 77 0 1 109 49 157 4.38e-12 65.9
MsaG034931 AT5G21222.3 29.358 109 77 0 1 109 49 157 4.38e-12 65.9
MsaG034931 AT1G69220.2 32.710 107 71 1 8 113 263 369 5.01e-12 65.9
MsaG034931 AT1G69220.1 32.710 107 71 1 8 113 290 396 5.34e-12 65.9
MsaG034931 AT1G79640.2 34.314 102 65 1 10 109 56 157 8.18e-12 65.1
MsaG034931 AT1G79640.4 34.314 102 65 1 10 109 56 157 8.18e-12 65.1
MsaG034931 AT1G79640.3 34.314 102 65 1 10 109 56 157 8.18e-12 65.1
MsaG034931 AT1G79640.1 34.314 102 65 1 10 109 56 157 8.20e-12 65.1
MsaG034931 AT1G79640.5 34.314 102 65 1 10 109 59 160 8.35e-12 65.1
MsaG034931 AT1G79640.6 34.314 102 65 1 10 109 56 157 8.42e-12 65.1
MsaG034931 AT2G34180.1 33.945 109 71 1 1 109 93 200 1.37e-11 64.3
MsaG034931 AT3G15220.1 37.079 89 56 0 25 113 73 161 1.38e-11 64.3
MsaG034931 AT5G39440.1 28.713 101 72 0 25 125 79 179 1.61e-11 63.9
MsaG034931 AT4G08500.1 31.429 105 71 1 7 111 376 479 5.02e-11 62.8
MsaG034931 AT1G19835.6 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G19835.5 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G19835.3 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G19835.1 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G19835.4 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G19835.2 90.625 32 3 0 200 231 245 276 6.02e-11 62.8
MsaG034931 AT1G53165.1 37.079 89 56 0 25 113 73 161 6.04e-11 62.4
MsaG034931 AT1G53165.3 34.653 101 66 0 13 113 61 161 6.53e-11 62.4
MsaG034931 AT1G53165.2 37.079 89 56 0 25 113 73 161 6.58e-11 62.4
MsaG034931 AT1G48260.1 24.623 199 100 5 2 198 47 197 8.68e-11 62.0

Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTGAAATTATCAGATTT+TGG 0.253070 7:+4535451 MsaT034931.1:CDS
CCAGTTGCTGTTGTTGTGAT+TGG 0.300638 7:-4535603 None:intergenic
ATGTTTATGAATAGACTCTA+TGG 0.331837 7:-4535141 None:intergenic
CATGCCCGACAACTTGCTTC+TGG 0.340707 7:+4535417 MsaT034931.1:CDS
GATGAAGCTAAATTCTATAT+CGG 0.354953 7:+4535104 MsaT034931.1:CDS
ATAAACATAATTATATTCAT+AGG 0.369736 7:+4535156 MsaT034931.1:CDS
AAAAGACTGCAGTAACCTTC+AGG 0.370471 7:+4535510 MsaT034931.1:CDS
GCTAGACTGCAGTAACCTTC+AGG 0.390289 7:+4535486 MsaT034931.1:CDS
ATGAAGCTAAATTCTATATC+GGG 0.407900 7:+4535105 MsaT034931.1:CDS
CCTCTCTTCAGAATAACTTC+TGG 0.412241 7:-4536086 None:intergenic
AAGCAAGTTCATCACTTTGA+AGG 0.415965 7:-4535570 None:intergenic
CCAATCACAACAACAGCAAC+TGG 0.416983 7:+4535603 MsaT034931.1:CDS
AGCTGCTAACAAGCAGCATA+TGG 0.446965 7:+4536371 MsaT034931.1:CDS
CGAGTATTTATATCTCATAA+TGG 0.455404 7:+4535022 MsaT034931.1:CDS
GAGTGTTCCAACCGTAGAAT+AGG 0.473047 7:-4536051 None:intergenic
TGCTATCAACTTCTGCAAGA+AGG 0.478344 7:-4534962 None:intergenic
TGCTGTTGTTGTGATTGGTT+AGG 0.484482 7:-4535598 None:intergenic
TCTAATGGAGTTAACATAAG+TGG 0.486303 7:+4535544 MsaT034931.1:CDS
GATATTACAGACCTATTCTA+CGG 0.488968 7:+4536040 MsaT034931.1:intron
AACAGCAACTGGAGCATTCG+CGG 0.503673 7:+4535614 MsaT034931.1:CDS
CTATCCAGAAGCAAGTTGTC+GGG 0.515263 7:-4535421 None:intergenic
TAAATACTCGTCATCTTGAA+AGG 0.518616 7:-4535009 None:intergenic
CAACGTCATCATATCTCCAC+CGG 0.521802 7:-4535054 None:intergenic
TCTATCCAGAAGCAAGTTGT+CGG 0.524432 7:-4535422 None:intergenic
TTACAGACCTATTCTACGGT+TGG 0.526606 7:+4536044 MsaT034931.1:intron
GTTATTCTGAAGAGAGGGTA+TGG 0.540943 7:+4536092 MsaT034931.1:CDS
CTCATAATGGAGTATCTACC+CGG 0.543468 7:+4535035 MsaT034931.1:CDS
AACTTGCTTCTGGATAGAAA+TGG 0.545939 7:+4535427 MsaT034931.1:CDS
AGAGATGCTTAGTAGAGGAC+AGG 0.546069 7:+4534837 None:intergenic
GGTATGGCGTGGAATGTGAT+TGG 0.559029 7:+4536108 MsaT034931.1:CDS
CTTGCTAAGATATCTCCAGC+AGG 0.576577 7:+4536408 MsaT034931.1:CDS
CAGCTATTTCACTTCTAGAG+TGG 0.582038 7:-4536460 None:intergenic
TGCTAACAAGCAGCATATGG+AGG 0.587476 7:+4536374 MsaT034931.1:CDS
CCAGAAGTTATTCTGAAGAG+AGG 0.595321 7:+4536086 MsaT034931.1:CDS
CAGAAGTTATTCTGAAGAGA+GGG 0.602815 7:+4536087 MsaT034931.1:CDS
TTGAATATATCAAATCTGAA+AGG 0.615218 7:+4534937 MsaT034931.1:CDS
ATATGATGACGTTGCTGATG+CGG 0.617376 7:+4535063 MsaT034931.1:CDS
GCTAACAAGCAGCATATGGA+GGG 0.621875 7:+4536375 MsaT034931.1:CDS
TGAAGGTTACTGCAGTCTAG+CGG 0.630065 7:-4535484 None:intergenic
AAATCAGAGATGCTTAGTAG+AGG 0.631650 7:+4534832 None:intergenic
TGAAGCTAAATTCTATATCG+GGG 0.655322 7:+4535106 MsaT034931.1:CDS
AACGTCATCATATCTCCACC+GGG 0.657380 7:-4535053 None:intergenic
TCTGAAGAGAGGGTATGGCG+TGG 0.686438 7:+4536097 MsaT034931.1:CDS
ATAATGGAGTATCTACCCGG+TGG 0.717919 7:+4535038 MsaT034931.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 4534841 4536479 4534841 ID=MsaG034931
Chr7 mRNA 4534841 4536479 4534841 ID=MsaT034931.1;Parent=MsaG034931
Chr7 exon 4534841 4534858 4534841 ID=MsaT034931.1.exon1;Parent=MsaT034931.1
Chr7 CDS 4534841 4534858 4534841 ID=cds.MsaT034931.1;Parent=MsaT034931.1
Chr7 exon 4534936 4535177 4534936 ID=MsaT034931.1.exon2;Parent=MsaT034931.1
Chr7 CDS 4534936 4535177 4534936 ID=cds.MsaT034931.1;Parent=MsaT034931.1
Chr7 exon 4535411 4535657 4535411 ID=MsaT034931.1.exon3;Parent=MsaT034931.1
Chr7 CDS 4535411 4535657 4535411 ID=cds.MsaT034931.1;Parent=MsaT034931.1
Chr7 exon 4536050 4536137 4536050 ID=MsaT034931.1.exon4;Parent=MsaT034931.1
Chr7 CDS 4536050 4536137 4536050 ID=cds.MsaT034931.1;Parent=MsaT034931.1
Chr7 exon 4536322 4536479 4536322 ID=MsaT034931.1.exon5;Parent=MsaT034931.1
Chr7 CDS 4536322 4536479 4536322 ID=cds.MsaT034931.1;Parent=MsaT034931.1
Gene Sequence

>MsaT034931.1

ATGCTTAGTAGAGGACAGGTTGAATATATCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCCGGTGGAGATATGATGACGTTGCTGATGCGGAAAGAAGTACTGACTGAAGATGAAGCTAAATTCTATATCGGGGAGACTGTGCTAGCCATAGAGTCTATTCATAAACATAATTATATTCATAGAGATATCATGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTAATGGAGTTAACATAAGTGGAGTCCTTCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCACAACAACAGCAACTGGAGCATTCGCGGAAAAATCGCAGCAGAATGCTGACCTATTCTACGGTTGGAACACTCGATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGGTATGGCGTGGAATGTGATTGGTATAATAAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAGGGTGTCAAAAAACTTGCTAAGATATCTCCAGCAGGCTATCCTTCAGAAAAGCACATAGAAATAGCCACTCTAGAAGTGAAATAG
Protein sequence

>MsaT034931.1

MLSRGQVEYIKSERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKEVLTEDEAKFYIGETVLAIESIHKHNYIHRDIMPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDCSNLQEKDLSNGVNISGVLQSDELALSPNQSQQQQLEHSRKNRSRMLTYSTVGTLDYIAPEVILKRGYGVECDWYNKLEIRNEEKNMSMRSAEAANKQHMEGVKKLAKISPAGYPSEKHIEIATLEVK*