Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035056 | RHN57958.1 | 82.114 | 123 | 20 | 1 | 1 | 123 | 1 | 121 | 1.31e-63 | 205 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035056 | tr|A0A396HZN8|A0A396HZN8_MEDTR | 82.114 | 123 | 20 | 1 | 1 | 123 | 1 | 121 | 6.24e-64 | 205 |
Gene ID | Type | Classification |
---|---|---|
MsaG035056 | TR | ARID |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001366 | MsaG035056 | 0.805816 | 1.882652e-49 | 2.908958e-47 |
MsaG005346 | MsaG035056 | 0.805877 | 1.827858e-49 | 2.828387e-47 |
MsaG006995 | MsaG035056 | 0.811169 | 1.372373e-50 | 2.411516e-48 |
MsaG017437 | MsaG035056 | 0.811436 | 1.201627e-50 | 2.125319e-48 |
MsaG029985 | MsaG035056 | 0.815428 | 1.609019e-51 | 3.144274e-49 |
MsaG035056 | MsaG038973 | 0.804455 | 3.614729e-49 | 5.411269e-47 |
MsaG035056 | MsaG041738 | 0.817580 | 5.331833e-52 | 1.100880e-49 |
MsaG035056 | MsaG041743 | 0.817950 | 4.403117e-52 | 9.178724e-50 |
MsaG035056 | MsaG045108 | 0.834106 | 6.597824e-56 | 2.151633e-53 |
MsaG035056 | MsaG013115 | 0.820576 | 1.118496e-52 | 2.497726e-50 |
MsaG035056 | MsaG013857 | 0.807082 | 1.020982e-49 | 1.625421e-47 |
MsaG035056 | MsaG032865 | 0.805114 | 2.638110e-49 | 4.010077e-47 |
MsaG035056 | MsaG035918 | 0.805621 | 2.067729e-49 | 3.180378e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035056 | MtrunA17_Chr5g0445971 | 82.114 | 123 | 20 | 1 | 1 | 123 | 1 | 121 | 1.20e-67 | 205 |
MsaG035056 | MtrunA17_Chr5g0435401 | 75.556 | 90 | 22 | 0 | 34 | 123 | 44 | 133 | 2.47e-41 | 144 |
MsaG035056 | MtrunA17_Chr5g0445951 | 72.131 | 61 | 16 | 1 | 123 | 182 | 74 | 134 | 4.61e-22 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 31 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTCAAACTCACTCAGCTTT+TGG | 0.244787 | 7:+6670748 | MsaT035056.1:CDS |
CACCTTCTTGTAGGAACATC+TGG | 0.271791 | 7:-6672165 | None:intergenic |
AGTTGTTTCTGCACTAAAAC+TGG | 0.324340 | 7:+6671411 | MsaT035056.1:CDS |
AGGTTGGCCATGAAAAGAAA+TGG | 0.416893 | 7:+6671383 | MsaT035056.1:intron |
TAGAAGGTCTCCAAGTCATT+AGG | 0.434040 | 7:-6670725 | None:intergenic |
CTGAGTGAGTTTGACGTAGA+AGG | 0.450835 | 7:-6670741 | None:intergenic |
GGTTGGCCATGAAAAGAAAT+GGG | 0.469245 | 7:+6671384 | MsaT035056.1:intron |
GTACTTCTACAGATCACAAA+AGG | 0.488119 | 7:+6671507 | MsaT035056.1:CDS |
CTCAATGGAAGACAAGGAAA+TGG | 0.517620 | 7:+6670634 | None:intergenic |
ACCAGTGTTGTCTTGTCCGA+CGG | 0.530488 | 7:+6670686 | MsaT035056.1:CDS |
TATTGAATCAAAAGAAGCTA+AGG | 0.535783 | 7:-6672100 | None:intergenic |
CCAGTGTTGTCTTGTCCGAC+GGG | 0.549085 | 7:+6670687 | MsaT035056.1:CDS |
GTATTGTTCTCCTAATGACT+TGG | 0.554561 | 7:+6670715 | MsaT035056.1:CDS |
ACACTGGTGAGTTGTGTGTT+CGG | 0.557134 | 7:-6670671 | None:intergenic |
ACAAGTCTAGGGATAGTTCT+CGG | 0.558393 | 7:-6670964 | None:intergenic |
ACCCAGATGTTCCTACAAGA+AGG | 0.578630 | 7:+6672163 | MsaT035056.1:CDS |
GTTTCTGCACTAAAACTGGA+AGG | 0.584593 | 7:+6671415 | MsaT035056.1:CDS |
ACCTTCTTGTAGGAACATCT+GGG | 0.599072 | 7:-6672164 | None:intergenic |
TACACCCATCTACAAAGGCA+TGG | 0.605358 | 7:-6672413 | None:intergenic |
TTACAGAGATGACAATGCAA+TGG | 0.612606 | 7:-6672062 | None:intergenic |
ACACAACTCAATGGAAGACA+AGG | 0.625634 | 7:+6670628 | None:intergenic |
CTATAAGTCAAATATTAGCA+AGG | 0.635319 | 7:+6672315 | MsaT035056.1:CDS |
AAGGATGTAGTGAGAGAACT+CGG | 0.640037 | 7:+6672334 | MsaT035056.1:CDS |
GGCATTACACCCATCTACAA+AGG | 0.641850 | 7:-6672418 | None:intergenic |
TGTAGTGAGAGAACTCGGTA+CGG | 0.654606 | 7:+6672339 | MsaT035056.1:CDS |
CAAGGAAATGGTGAAGACGA+CGG | 0.673865 | 7:+6670646 | MsaT035056.1:CDS |
TTGGCCATGAAAAGAAATGG+GGG | 0.692749 | 7:+6671386 | MsaT035056.1:CDS |
CCCGTCGGACAAGACAACAC+TGG | 0.699697 | 7:-6670687 | None:intergenic |
GTTGGCCATGAAAAGAAATG+GGG | 0.704590 | 7:+6671385 | MsaT035056.1:CDS |
AGAACAATACTGTTTCCCGT+CGG | 0.725382 | 7:-6670702 | None:intergenic |
TGGCCATGAAAAGAAATGGG+GGG | 0.738244 | 7:+6671387 | MsaT035056.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 6670638 | 6672426 | 6670638 | ID=MsaG035056 |
Chr7 | mRNA | 6670638 | 6672426 | 6670638 | ID=MsaT035056.1;Parent=MsaG035056 |
Chr7 | exon | 6670638 | 6670792 | 6670638 | ID=MsaT035056.1.exon1;Parent=MsaT035056.1 |
Chr7 | CDS | 6670638 | 6670792 | 6670638 | ID=cds.MsaT035056.1;Parent=MsaT035056.1 |
Chr7 | exon | 6670955 | 6671030 | 6670955 | ID=MsaT035056.1.exon2;Parent=MsaT035056.1 |
Chr7 | CDS | 6670955 | 6671030 | 6670955 | ID=cds.MsaT035056.1;Parent=MsaT035056.1 |
Chr7 | exon | 6671385 | 6671528 | 6671385 | ID=MsaT035056.1.exon3;Parent=MsaT035056.1 |
Chr7 | CDS | 6671385 | 6671528 | 6671385 | ID=cds.MsaT035056.1;Parent=MsaT035056.1 |
Chr7 | exon | 6672048 | 6672184 | 6672048 | ID=MsaT035056.1.exon4;Parent=MsaT035056.1 |
Chr7 | CDS | 6672048 | 6672184 | 6672048 | ID=cds.MsaT035056.1;Parent=MsaT035056.1 |
Chr7 | exon | 6672312 | 6672426 | 6672312 | ID=MsaT035056.1.exon5;Parent=MsaT035056.1 |
Chr7 | CDS | 6672312 | 6672426 | 6672312 | ID=cds.MsaT035056.1;Parent=MsaT035056.1 |
Gene Sequence |
Protein sequence |