AlfalfaGEDB | MsaG035056

M. sativa ssp. caerulea / MsaG035056

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035056	RHN57958.1	82.114	123	20	1	1	123	1	121	1.31e-63	205

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035056	tr\|A0A396HZN8\|A0A396HZN8_MEDTR	82.114	123	20	1	1	123	1	121	6.24e-64	205

TFs/TRs:

Gene ID	Type	Classification
MsaG035056	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001366	MsaG035056	0.805816	1.882652e-49	2.908958e-47
MsaG005346	MsaG035056	0.805877	1.827858e-49	2.828387e-47
MsaG006995	MsaG035056	0.811169	1.372373e-50	2.411516e-48
MsaG017437	MsaG035056	0.811436	1.201627e-50	2.125319e-48
MsaG029985	MsaG035056	0.815428	1.609019e-51	3.144274e-49
MsaG035056	MsaG038973	0.804455	3.614729e-49	5.411269e-47
MsaG035056	MsaG041738	0.817580	5.331833e-52	1.100880e-49
MsaG035056	MsaG041743	0.817950	4.403117e-52	9.178724e-50
MsaG035056	MsaG045108	0.834106	6.597824e-56	2.151633e-53
MsaG035056	MsaG013115	0.820576	1.118496e-52	2.497726e-50
MsaG035056	MsaG013857	0.807082	1.020982e-49	1.625421e-47
MsaG035056	MsaG032865	0.805114	2.638110e-49	4.010077e-47
MsaG035056	MsaG035918	0.805621	2.067729e-49	3.180378e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035056	MtrunA17_Chr5g0445971	82.114	123	20	1	1	123	1	121	1.20e-67	205
MsaG035056	MtrunA17_Chr5g0435401	75.556	90	22	0	34	123	44	133	2.47e-41	144
MsaG035056	MtrunA17_Chr5g0445951	72.131	61	16	1	123	182	74	134	4.61e-22	90.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGTCAAACTCACTCAGCTTT+TGG	0.244787	7:+6670748	MsaT035056.1:CDS
CACCTTCTTGTAGGAACATC+TGG	0.271791	7:-6672165	None:intergenic
AGTTGTTTCTGCACTAAAAC+TGG	0.324340	7:+6671411	MsaT035056.1:CDS
AGGTTGGCCATGAAAAGAAA+TGG	0.416893	7:+6671383	MsaT035056.1:intron
TAGAAGGTCTCCAAGTCATT+AGG	0.434040	7:-6670725	None:intergenic
CTGAGTGAGTTTGACGTAGA+AGG	0.450835	7:-6670741	None:intergenic
GGTTGGCCATGAAAAGAAAT+GGG	0.469245	7:+6671384	MsaT035056.1:intron
GTACTTCTACAGATCACAAA+AGG	0.488119	7:+6671507	MsaT035056.1:CDS
CTCAATGGAAGACAAGGAAA+TGG	0.517620	7:+6670634	None:intergenic
ACCAGTGTTGTCTTGTCCGA+CGG	0.530488	7:+6670686	MsaT035056.1:CDS
TATTGAATCAAAAGAAGCTA+AGG	0.535783	7:-6672100	None:intergenic
CCAGTGTTGTCTTGTCCGAC+GGG	0.549085	7:+6670687	MsaT035056.1:CDS
GTATTGTTCTCCTAATGACT+TGG	0.554561	7:+6670715	MsaT035056.1:CDS
ACACTGGTGAGTTGTGTGTT+CGG	0.557134	7:-6670671	None:intergenic
ACAAGTCTAGGGATAGTTCT+CGG	0.558393	7:-6670964	None:intergenic
ACCCAGATGTTCCTACAAGA+AGG	0.578630	7:+6672163	MsaT035056.1:CDS
GTTTCTGCACTAAAACTGGA+AGG	0.584593	7:+6671415	MsaT035056.1:CDS
ACCTTCTTGTAGGAACATCT+GGG	0.599072	7:-6672164	None:intergenic
TACACCCATCTACAAAGGCA+TGG	0.605358	7:-6672413	None:intergenic
TTACAGAGATGACAATGCAA+TGG	0.612606	7:-6672062	None:intergenic
ACACAACTCAATGGAAGACA+AGG	0.625634	7:+6670628	None:intergenic
CTATAAGTCAAATATTAGCA+AGG	0.635319	7:+6672315	MsaT035056.1:CDS
AAGGATGTAGTGAGAGAACT+CGG	0.640037	7:+6672334	MsaT035056.1:CDS
GGCATTACACCCATCTACAA+AGG	0.641850	7:-6672418	None:intergenic
TGTAGTGAGAGAACTCGGTA+CGG	0.654606	7:+6672339	MsaT035056.1:CDS
CAAGGAAATGGTGAAGACGA+CGG	0.673865	7:+6670646	MsaT035056.1:CDS
TTGGCCATGAAAAGAAATGG+GGG	0.692749	7:+6671386	MsaT035056.1:CDS
CCCGTCGGACAAGACAACAC+TGG	0.699697	7:-6670687	None:intergenic
GTTGGCCATGAAAAGAAATG+GGG	0.704590	7:+6671385	MsaT035056.1:CDS
AGAACAATACTGTTTCCCGT+CGG	0.725382	7:-6670702	None:intergenic
TGGCCATGAAAAGAAATGGG+GGG	0.738244	7:+6671387	MsaT035056.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	6670638	6672426	6670638	ID=MsaG035056
Chr7	mRNA	6670638	6672426	6670638	ID=MsaT035056.1;Parent=MsaG035056
Chr7	exon	6670638	6670792	6670638	ID=MsaT035056.1.exon1;Parent=MsaT035056.1
Chr7	CDS	6670638	6670792	6670638	ID=cds.MsaT035056.1;Parent=MsaT035056.1
Chr7	exon	6670955	6671030	6670955	ID=MsaT035056.1.exon2;Parent=MsaT035056.1
Chr7	CDS	6670955	6671030	6670955	ID=cds.MsaT035056.1;Parent=MsaT035056.1
Chr7	exon	6671385	6671528	6671385	ID=MsaT035056.1.exon3;Parent=MsaT035056.1
Chr7	CDS	6671385	6671528	6671385	ID=cds.MsaT035056.1;Parent=MsaT035056.1
Chr7	exon	6672048	6672184	6672048	ID=MsaT035056.1.exon4;Parent=MsaT035056.1
Chr7	CDS	6672048	6672184	6672048	ID=cds.MsaT035056.1;Parent=MsaT035056.1
Chr7	exon	6672312	6672426	6672312	ID=MsaT035056.1.exon5;Parent=MsaT035056.1
Chr7	CDS	6672312	6672426	6672312	ID=cds.MsaT035056.1;Parent=MsaT035056.1

Gene Sequence

>MsaT035056.1

ATGGAAGACAAGGAAATGGTGAAGACGACGGTTCCGAACACACAACTCACCAGTGTTGTCTTGTCCGACGGGAAACAGTATTGTTCTCCTAATGACTTGGAGACCTTCTACGTCAAACTCACTCAGCTTTTGGACTTGCTTGGATTCACTCTCATTTTCAATGTCCGAGAACTATCCCTAGACTTGTACGTCTTTTTCTTGGAGGTCACAAAAAGAGGAGGTTATCACCAGGTTGGCCATGAAAAGAAATGGGGGGAAGTTGTTTCTGCACTAAAACTGGAAGGAAACAATGCAGTCTTATGTGCTCAAGTTGAAAAACTCTATGGTTATCTTCTTTACGAATTTGAGAAATTGTACTTCTACAGATCACAAAAGTTCTGCAATGCAAACCATTGCATTGTCATCTCTGTAAGCAATTTTCTGAAAACCTTAGCTTCTTTTGATTCAATACTTCTTTGTATGAATTCTATCTTTTTACAGGGAAGATGCTACCCAGATGTTCCTACAAGAAGATTCTATAAGTCAAATATTAGCAAGGATGTAGTGAGAGAACTCGGTACGGAATGTAAAGATTTTTGGCAATGTGTTTTATTTGTTGGTACTTTGTGTCTGTCCATGCCTTTGTAG

Protein sequence

>MsaT035056.1

MEDKEMVKTTVPNTQLTSVVLSDGKQYCSPNDLETFYVKLTQLLDLLGFTLIFNVRELSLDLYVFFLEVTKRGGYHQVGHEKKWGEVVSALKLEGNNAVLCAQVEKLYGYLLYEFEKLYFYRSQKFCNANHCIVISVSNFLKTLASFDSILLCMNSIFLQGRCYPDVPTRRFYKSNISKDVVRELGTECKDFWQCVLFVGTLCLSMPL*