Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035066 | XP_024627340.1 | 83.459 | 133 | 21 | 1 | 113 | 244 | 242 | 374 | 2.77e-59 | 225 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035066 | sp|B9DFI7|PMT2_ARATH | 77.083 | 48 | 11 | 0 | 490 | 537 | 502 | 549 | 3.44e-18 | 92.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035066 | tr|A0A072U5Z8|A0A072U5Z8_MEDTR | 83.459 | 133 | 21 | 1 | 113 | 244 | 242 | 374 | 1.32e-59 | 225 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035066 | MtrunA17_Chr7g0274311 | 83.459 | 133 | 21 | 1 | 113 | 244 | 242 | 374 | 2.54e-63 | 225 |
MsaG035066 | MtrunA17_Chr1g0186381 | 93.548 | 62 | 4 | 0 | 430 | 491 | 392 | 453 | 1.97e-29 | 124 |
MsaG035066 | MtrunA17_Chr4g0055031 | 91.667 | 48 | 4 | 0 | 490 | 537 | 497 | 544 | 1.18e-23 | 105 |
MsaG035066 | MtrunA17_Chr8g0361791 | 89.583 | 48 | 5 | 0 | 490 | 537 | 494 | 541 | 6.46e-23 | 103 |
MsaG035066 | MtrunA17_Chr5g0416991 | 79.167 | 48 | 10 | 0 | 490 | 537 | 493 | 540 | 1.37e-20 | 96.3 |
MsaG035066 | MtrunA17_Chr3g0092501 | 72.917 | 48 | 13 | 0 | 490 | 537 | 491 | 538 | 6.66e-19 | 90.9 |
MsaG035066 | MtrunA17_Chr8g0388881 | 68.750 | 48 | 15 | 0 | 490 | 537 | 514 | 561 | 1.91e-17 | 86.3 |
MsaG035066 | MtrunA17_Chr1g0203741 | 72.917 | 48 | 13 | 0 | 490 | 537 | 511 | 558 | 3.75e-17 | 85.5 |
MsaG035066 | MtrunA17_Chr6g0472571 | 68.750 | 48 | 15 | 0 | 490 | 537 | 520 | 567 | 1.13e-16 | 84.0 |
MsaG035066 | MtrunA17_Chr7g0246701 | 64.583 | 48 | 17 | 0 | 490 | 537 | 519 | 566 | 3.16e-16 | 82.4 |
MsaG035066 | MtrunA17_Chr5g0397931 | 78.261 | 46 | 10 | 0 | 327 | 372 | 491 | 536 | 1.05e-15 | 80.9 |
MsaG035066 | MtrunA17_Chr7g0214551 | 68.750 | 48 | 15 | 0 | 490 | 537 | 462 | 509 | 1.25e-15 | 80.5 |
MsaG035066 | MtrunA17_Chr8g0377991 | 84.783 | 46 | 7 | 0 | 387 | 432 | 596 | 641 | 7.46e-15 | 78.2 |
MsaG035066 | MtrunA17_Chr8g0350391 | 62.500 | 48 | 18 | 0 | 490 | 537 | 524 | 571 | 1.06e-14 | 77.8 |
MsaG035066 | MtrunA17_Chr3g0130381 | 63.830 | 47 | 17 | 0 | 491 | 537 | 675 | 721 | 1.16e-14 | 77.8 |
MsaG035066 | MtrunA17_Chr5g0404761 | 59.574 | 47 | 19 | 0 | 491 | 537 | 173 | 219 | 3.00e-14 | 73.6 |
MsaG035066 | MtrunA17_Chr8g0389491 | 66.667 | 60 | 16 | 2 | 2 | 61 | 130 | 185 | 1.37e-13 | 70.5 |
MsaG035066 | MtrunA17_Chr8g0384431 | 57.447 | 47 | 20 | 0 | 491 | 537 | 705 | 751 | 1.55e-13 | 74.3 |
MsaG035066 | MtrunA17_Chr8g0372471 | 67.442 | 43 | 14 | 0 | 491 | 533 | 789 | 831 | 1.86e-13 | 73.9 |
MsaG035066 | MtrunA17_Chr3g0121951 | 65.385 | 52 | 18 | 0 | 387 | 438 | 589 | 640 | 2.49e-13 | 73.6 |
MsaG035066 | MtrunA17_Chr3g0125511 | 62.791 | 43 | 16 | 0 | 491 | 533 | 641 | 683 | 4.53e-13 | 72.8 |
MsaG035066 | MtrunA17_Chr3g0113981 | 55.319 | 47 | 21 | 0 | 491 | 537 | 571 | 617 | 9.03e-13 | 71.6 |
MsaG035066 | MtrunA17_Chr1g0155141 | 60.976 | 41 | 16 | 0 | 491 | 531 | 597 | 637 | 1.52e-12 | 70.9 |
MsaG035066 | MtrunA17_Chr3g0121931 | 73.913 | 46 | 12 | 0 | 387 | 432 | 593 | 638 | 2.28e-12 | 70.5 |
MsaG035066 | MtrunA17_Chr1g0171781 | 63.265 | 49 | 15 | 1 | 492 | 537 | 496 | 544 | 2.33e-12 | 70.1 |
MsaG035066 | MtrunA17_Chr5g0435751 | 57.447 | 47 | 20 | 0 | 491 | 537 | 515 | 561 | 3.40e-12 | 69.7 |
MsaG035066 | MtrunA17_Chr5g0409411 | 45.161 | 62 | 34 | 0 | 476 | 537 | 471 | 532 | 4.65e-12 | 68.9 |
MsaG035066 | MtrunA17_Chr8g0350351 | 54.717 | 53 | 18 | 1 | 491 | 537 | 489 | 541 | 6.73e-12 | 68.6 |
MsaG035066 | MtrunA17_Chr5g0437501 | 53.191 | 47 | 22 | 0 | 491 | 537 | 508 | 554 | 7.70e-12 | 68.6 |
MsaG035066 | MtrunA17_Chr7g0246681 | 54.717 | 53 | 18 | 1 | 491 | 537 | 476 | 528 | 1.05e-11 | 68.2 |
MsaG035066 | MtrunA17_Chr4g0043131 | 52.083 | 48 | 22 | 1 | 491 | 537 | 79 | 126 | 1.12e-11 | 64.3 |
MsaG035066 | MtrunA17_Chr8g0369481 | 53.191 | 47 | 22 | 0 | 491 | 537 | 484 | 530 | 1.31e-11 | 67.8 |
MsaG035066 | MtrunA17_Chr1g0159741 | 57.143 | 49 | 19 | 1 | 491 | 537 | 552 | 600 | 1.79e-11 | 67.4 |
MsaG035066 | MtrunA17_Chr3g0112341 | 55.319 | 47 | 21 | 0 | 491 | 537 | 563 | 609 | 2.64e-11 | 67.0 |
MsaG035066 | MtrunA17_Chr1g0167381 | 38.144 | 97 | 57 | 2 | 442 | 537 | 459 | 553 | 6.36e-11 | 65.5 |
MsaG035066 | MtrunA17_Chr4g0046401 | 46.429 | 84 | 42 | 2 | 430 | 513 | 394 | 474 | 9.75e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035066 | AT1G26850.2 | 77.083 | 48 | 11 | 0 | 490 | 537 | 502 | 549 | 3.50e-19 | 92.4 |
MsaG035066 | AT1G26850.1 | 77.083 | 48 | 11 | 0 | 490 | 537 | 502 | 549 | 3.50e-19 | 92.4 |
MsaG035066 | AT4G18030.1 | 76.596 | 47 | 11 | 0 | 491 | 537 | 498 | 544 | 1.17e-18 | 90.5 |
MsaG035066 | AT1G33170.1 | 68.750 | 48 | 15 | 0 | 490 | 537 | 528 | 575 | 8.58e-17 | 84.7 |
MsaG035066 | AT4G10440.1 | 70.833 | 48 | 14 | 0 | 490 | 537 | 510 | 557 | 1.02e-16 | 84.3 |
MsaG035066 | AT2G43200.2 | 66.667 | 48 | 16 | 0 | 490 | 537 | 505 | 552 | 1.01e-15 | 81.3 |
MsaG035066 | AT2G43200.1 | 66.667 | 48 | 16 | 0 | 490 | 537 | 505 | 552 | 1.01e-15 | 81.3 |
MsaG035066 | AT4G00750.1 | 64.583 | 48 | 17 | 0 | 490 | 537 | 516 | 563 | 1.25e-15 | 80.9 |
MsaG035066 | AT1G29470.1 | 63.830 | 47 | 17 | 0 | 491 | 537 | 656 | 702 | 2.17e-14 | 77.4 |
MsaG035066 | AT1G29470.2 | 63.830 | 47 | 17 | 0 | 491 | 537 | 656 | 702 | 2.17e-14 | 77.4 |
MsaG035066 | AT2G34300.2 | 61.702 | 47 | 18 | 0 | 491 | 537 | 656 | 702 | 3.64e-14 | 76.6 |
MsaG035066 | AT2G34300.3 | 61.702 | 47 | 18 | 0 | 491 | 537 | 656 | 702 | 3.64e-14 | 76.6 |
MsaG035066 | AT2G34300.1 | 61.702 | 47 | 18 | 0 | 491 | 537 | 656 | 702 | 3.64e-14 | 76.6 |
MsaG035066 | AT3G51070.1 | 61.702 | 47 | 18 | 0 | 491 | 537 | 788 | 834 | 5.90e-14 | 75.9 |
MsaG035066 | AT5G64030.1 | 59.574 | 47 | 19 | 0 | 491 | 537 | 715 | 761 | 1.36e-13 | 74.7 |
MsaG035066 | AT2G45750.1 | 60.417 | 48 | 19 | 0 | 490 | 537 | 509 | 556 | 1.59e-13 | 74.3 |
MsaG035066 | AT4G19120.1 | 55.319 | 47 | 21 | 0 | 491 | 537 | 486 | 532 | 6.64e-13 | 72.4 |
MsaG035066 | AT4G19120.2 | 55.319 | 47 | 21 | 0 | 491 | 537 | 486 | 532 | 6.64e-13 | 72.4 |
MsaG035066 | AT5G06050.1 | 57.447 | 47 | 20 | 0 | 491 | 537 | 559 | 605 | 1.20e-12 | 71.6 |
MsaG035066 | AT4G00740.1 | 56.604 | 53 | 17 | 1 | 491 | 537 | 482 | 534 | 2.34e-12 | 70.5 |
MsaG035066 | AT4G00740.2 | 56.604 | 53 | 17 | 1 | 491 | 537 | 482 | 534 | 2.34e-12 | 70.5 |
MsaG035066 | AT3G23790.1 | 46.535 | 101 | 44 | 4 | 387 | 487 | 594 | 684 | 2.50e-12 | 70.5 |
MsaG035066 | AT1G77260.1 | 52.308 | 65 | 28 | 2 | 491 | 555 | 551 | 612 | 3.93e-12 | 70.1 |
MsaG035066 | AT5G04060.1 | 61.224 | 49 | 16 | 1 | 492 | 537 | 490 | 538 | 4.03e-12 | 69.7 |
MsaG035066 | AT1G31850.1 | 55.319 | 47 | 21 | 0 | 491 | 537 | 492 | 538 | 4.12e-12 | 69.7 |
MsaG035066 | AT1G31850.2 | 55.319 | 47 | 21 | 0 | 491 | 537 | 492 | 538 | 4.12e-12 | 69.7 |
MsaG035066 | AT1G31850.4 | 55.319 | 47 | 21 | 0 | 491 | 537 | 492 | 538 | 4.12e-12 | 69.7 |
MsaG035066 | AT1G31850.3 | 55.319 | 47 | 21 | 0 | 491 | 537 | 492 | 538 | 4.12e-12 | 69.7 |
MsaG035066 | AT4G14070.1 | 60.656 | 61 | 19 | 1 | 387 | 442 | 610 | 670 | 4.56e-12 | 69.7 |
MsaG035066 | AT2G39750.1 | 53.191 | 47 | 22 | 0 | 491 | 537 | 587 | 633 | 6.47e-12 | 69.3 |
MsaG035066 | AT3G10200.1 | 60.000 | 50 | 16 | 1 | 492 | 537 | 479 | 528 | 8.04e-12 | 68.9 |
MsaG035066 | AT3G10200.2 | 60.000 | 50 | 16 | 1 | 492 | 537 | 479 | 528 | 9.02e-12 | 68.6 |
MsaG035066 | AT1G19430.1 | 62.500 | 40 | 15 | 0 | 492 | 531 | 621 | 660 | 2.13e-11 | 67.8 |
MsaG035066 | AT1G19430.3 | 62.500 | 40 | 15 | 0 | 492 | 531 | 621 | 660 | 2.13e-11 | 67.8 |
MsaG035066 | AT3G51070.2 | 71.429 | 35 | 10 | 0 | 491 | 525 | 788 | 822 | 2.54e-11 | 67.4 |
MsaG035066 | AT3G56080.1 | 52.174 | 46 | 22 | 0 | 492 | 537 | 512 | 557 | 3.41e-11 | 67.0 |
Find 127 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCATCAGTGACTATATT+TGG | 0.140336 | 7:+6798500 | None:intergenic |
TGGACTACAATTCGGCTTTA+AGG | 0.146494 | 7:+6798520 | None:intergenic |
AACCTCAAGGTCCAATATTT+TGG | 0.150909 | 7:+6799985 | None:intergenic |
GCTTCTAGTAATTATGAAAT+TGG | 0.163098 | 7:-6798446 | MsaT035066.1:CDS |
TAGTCACAAAGTTCTTATTT+AGG | 0.164503 | 7:-6798850 | MsaT035066.1:CDS |
AATCAGCCGGTAATTAAATT+TGG | 0.201240 | 7:+6798148 | None:intergenic |
TTTATCACATGACATCTATT+TGG | 0.212665 | 7:+6797379 | None:intergenic |
ATTATGAAATTGGAACTAAA+TGG | 0.234648 | 7:-6798436 | MsaT035066.1:CDS |
AGTCACAAAGTTCTTATTTA+GGG | 0.258379 | 7:-6798849 | MsaT035066.1:CDS |
TATTCCGTCATCATCTGATA+TGG | 0.266924 | 7:+6799832 | None:intergenic |
TTACCAATATCAGGTGGTTT+TGG | 0.291858 | 7:+6798116 | None:intergenic |
GATTGTTGAAGCCAAAATAT+TGG | 0.313259 | 7:-6799996 | MsaT035066.1:CDS |
AAAAGGAACATAAAGAATTA+AGG | 0.324233 | 7:-6799313 | MsaT035066.1:CDS |
TACACGCCAAATTTAATTAC+CGG | 0.335512 | 7:-6798154 | MsaT035066.1:CDS |
TATGATCTTATTCATACTAA+TGG | 0.336334 | 7:-6798299 | MsaT035066.1:CDS |
TTATGAAATTGGAACTAAAT+GGG | 0.336985 | 7:-6798435 | MsaT035066.1:CDS |
AATCAACAAATTGTAGTTGT+TGG | 0.340348 | 7:-6798620 | MsaT035066.1:CDS |
AAATAAGAACTTTGTGACTA+TGG | 0.341957 | 7:+6798853 | None:intergenic |
CATAAAAGAAACTTTGCTTT+TGG | 0.348683 | 7:-6798468 | MsaT035066.1:CDS |
AGCTGAAGTCCTGGGCTTCC+CGG | 0.354506 | 7:+6799709 | None:intergenic |
ACTCGTGGTTCTGACAATAA+TGG | 0.362283 | 7:+6799674 | None:intergenic |
GAAAACGTATTCTTCAGATT+TGG | 0.367532 | 7:+6800058 | None:intergenic |
CCGCCAAAACCACCTGATAT+TGG | 0.368412 | 7:-6798119 | MsaT035066.1:CDS |
TCAACTGAGGATCTGACTTC+CGG | 0.372038 | 7:-6799728 | MsaT035066.1:CDS |
TAAGGACTTGATGAATTCAT+TGG | 0.375949 | 7:+6798538 | None:intergenic |
GTAATTAAATTTGGCGTGTA+AGG | 0.377100 | 7:+6798157 | None:intergenic |
GCTATATGTTCATGTGCATT+TGG | 0.381113 | 7:+6798197 | None:intergenic |
ACTATATTTGGACTACAATT+CGG | 0.381509 | 7:+6798512 | None:intergenic |
GATTATCCATGATGTCTTCC+AGG | 0.387409 | 7:+6798246 | None:intergenic |
TGGAATTCTTGTGTCTTCCT+TGG | 0.393805 | 7:+6799781 | None:intergenic |
CGTCGATCCGGTGGTTTCTT+CGG | 0.394996 | 7:+6798707 | None:intergenic |
AACAAATTGTAGTTGTTGGT+TGG | 0.396289 | 7:-6798616 | MsaT035066.1:CDS |
GTGCCAACATATTCACTGTT+TGG | 0.396462 | 7:+6798563 | None:intergenic |
GTTTGAAGTGATTGAGGAAC+AGG | 0.397248 | 7:-6799366 | MsaT035066.1:CDS |
CAACTGAGGATCTGACTTCC+GGG | 0.397907 | 7:-6799727 | MsaT035066.1:CDS |
GGAACATCATTGAAGAAAAC+AGG | 0.409067 | 7:+6799524 | None:intergenic |
CTCGTGGTTCTGACAATAAT+GGG | 0.415353 | 7:+6799675 | None:intergenic |
ATATATGAAAGAGGTTTCAT+TGG | 0.416524 | 7:-6798368 | MsaT035066.1:CDS |
ACAAATTGTAGTTGTTGGTT+GGG | 0.419664 | 7:-6798615 | MsaT035066.1:CDS |
GCAACAATGAAAAGTGGAAA+TGG | 0.431927 | 7:-6799608 | MsaT035066.1:CDS |
CTTCCAGGTTGCATTTGTCC+TGG | 0.432650 | 7:+6798261 | None:intergenic |
CAAAATCCAACACCGTCGTT+TGG | 0.436592 | 7:-6799227 | MsaT035066.1:CDS |
AAAGAGGTTGGATTTATGTA+TGG | 0.437023 | 7:-6798410 | MsaT035066.1:CDS |
TCATTGGTATTTATCATGAC+TGG | 0.440851 | 7:-6798352 | MsaT035066.1:CDS |
TTGAAGAAAACAGGCTCCCT+TGG | 0.446375 | 7:+6799533 | None:intergenic |
TGAAGAAAACAGGCTCCCTT+GGG | 0.446472 | 7:+6799534 | None:intergenic |
ATCTGACTTCCGGGAAGCCC+AGG | 0.447323 | 7:-6799718 | MsaT035066.1:CDS |
GGAGGAAGAATGTGTTGAAA+AGG | 0.449896 | 7:-6799330 | MsaT035066.1:CDS |
GGTGACGATGAATGCGATAT+TGG | 0.454304 | 7:-6799281 | MsaT035066.1:CDS |
ACCAAGGGCGTTGGCTTTGT+AGG | 0.456437 | 7:+6797924 | None:intergenic |
TTGATTTATGCTACTCCTCA+TGG | 0.461069 | 7:+6798637 | None:intergenic |
AAGTCGTGTCTGAATTCAGC+TGG | 0.468104 | 7:-6799883 | MsaT035066.1:CDS |
TCTGTTATATTTGATAATGT+AGG | 0.469008 | 7:+6799503 | None:intergenic |
TGAAGAGTTTGAAGTGATTG+AGG | 0.469664 | 7:-6799372 | MsaT035066.1:CDS |
TCTTGTGAAATGTCCTGAAA+AGG | 0.473367 | 7:+6798822 | None:intergenic |
ACTAAATGGGGTAAAGAGGT+TGG | 0.476567 | 7:-6798422 | MsaT035066.1:CDS |
CACAGATGTCGGAAACGCTT+CGG | 0.477915 | 7:+6800087 | None:intergenic |
ATCTCCTCAATACTAACAAC+AGG | 0.480254 | 7:+6799476 | None:intergenic |
AATTCTTGCGCTATTGAAAG+AGG | 0.482749 | 7:-6800131 | MsaT035066.1:CDS |
GGTTGGGATAAGCGACGTCT+TGG | 0.484434 | 7:-6798599 | MsaT035066.1:CDS |
TTCTTCGGCAGCAGCAGTGA+TGG | 0.484612 | 7:+6798722 | None:intergenic |
TCTTCTGGTTCTTCATTCAG+TGG | 0.490937 | 7:+6799404 | None:intergenic |
AGAACCTGTTGTTAGTATTG+AGG | 0.492750 | 7:-6799480 | MsaT035066.1:CDS |
ACCTACAAAGCCAACGCCCT+TGG | 0.496612 | 7:-6797925 | MsaT035066.1:intron |
TGGAACTAAATGGGGTAAAG+AGG | 0.503441 | 7:-6798426 | MsaT035066.1:CDS |
GTCTCAACCTTGTTATTCAG+TGG | 0.506391 | 7:+6800022 | None:intergenic |
ATGGTTTGACAGAACTTGAC+TGG | 0.512573 | 7:-6799589 | MsaT035066.1:CDS |
TTATTCAGTGGTTCTCGTTG+TGG | 0.513186 | 7:+6800034 | None:intergenic |
ATTCCGTCATCATCTGATAT+GGG | 0.517619 | 7:+6799833 | None:intergenic |
CCTGTAGCAACACGTCGATC+CGG | 0.519072 | 7:+6798695 | None:intergenic |
TGAGGTAGCGATGTCGTTGA+CGG | 0.519862 | 7:-6799948 | MsaT035066.1:CDS |
CCGGATCGACGTGTTGCTAC+AGG | 0.519890 | 7:-6798695 | MsaT035066.1:CDS |
TTGGCGGAGGTTTAATCAGC+CGG | 0.524059 | 7:+6798135 | None:intergenic |
GAAGGTGTTATATATGAAAG+AGG | 0.524341 | 7:-6798377 | MsaT035066.1:CDS |
CATCATGGATAATCATGTCA+TGG | 0.530143 | 7:-6798237 | MsaT035066.1:CDS |
GCAGAAGCAACAATGAAAAG+TGG | 0.534764 | 7:-6799614 | MsaT035066.1:CDS |
GCAGCTTCTTCAAGTTCAGA+TGG | 0.535868 | 7:+6798659 | None:intergenic |
GACATCGCTACCTCATCGTC+CGG | 0.538728 | 7:+6799956 | None:intergenic |
AAACTGCATTGATGCACGCT+TGG | 0.540828 | 7:+6798058 | None:intergenic |
CCAGAAATTACCAAGGGCGT+TGG | 0.541033 | 7:+6797915 | None:intergenic |
CCACAAAACAAGCTATCAAA+CGG | 0.543672 | 7:-6797992 | MsaT035066.1:CDS |
TGGTTTATTTAGTTTGTACC+AGG | 0.546436 | 7:-6798279 | MsaT035066.1:CDS |
CTGCATTGATGCACGCTTGG+TGG | 0.547808 | 7:+6798061 | None:intergenic |
AAGAGGAGATCGACTTTGCT+CGG | 0.548578 | 7:-6800114 | MsaT035066.1:CDS |
TCAGCTGGGATAACAATTCA+CGG | 0.550423 | 7:-6799868 | MsaT035066.1:CDS |
TATGAAATTGGAACTAAATG+GGG | 0.551329 | 7:-6798434 | MsaT035066.1:CDS |
ATGCAACCTGGAAGACATCA+TGG | 0.553014 | 7:-6798252 | MsaT035066.1:CDS |
TTTGGCTGTTCCACAGATGT+CGG | 0.553476 | 7:+6800076 | None:intergenic |
GTGATGTTTGTCTGTCCCCA+AGG | 0.554875 | 7:-6799550 | MsaT035066.1:CDS |
ATTACTCCAAACGACGGTGT+TGG | 0.561985 | 7:+6799221 | None:intergenic |
AGCCAAAATATTGGACCTTG+AGG | 0.564494 | 7:-6799987 | MsaT035066.1:CDS |
GGAACAGGCTGAAGAAATCA+AGG | 0.564973 | 7:-6799351 | MsaT035066.1:CDS |
GGAATAAGTATACCAATTCA+CGG | 0.565875 | 7:-6799815 | MsaT035066.1:CDS |
AAGAATTCCATGTGAATACA+TGG | 0.567936 | 7:-6799768 | MsaT035066.1:CDS |
AGTCCAAATATAGTCACTGA+TGG | 0.569444 | 7:-6798503 | MsaT035066.1:CDS |
AAGTACATAAGCTGAAGTCC+TGG | 0.577144 | 7:+6799700 | None:intergenic |
CAAAGCTCCATGTATTCACA+TGG | 0.577507 | 7:+6799761 | None:intergenic |
TTGCTTTCTACTTGTACTCG+TGG | 0.581902 | 7:+6799659 | None:intergenic |
AAAGAATTAAGGACTAAACT+TGG | 0.584573 | 7:-6799302 | MsaT035066.1:CDS |
AGTACATAAGCTGAAGTCCT+GGG | 0.590382 | 7:+6799701 | None:intergenic |
CGTCCGGTGTCTCAACCTCA+AGG | 0.591559 | 7:+6799972 | None:intergenic |
GTCACAAAGTTCTTATTTAG+GGG | 0.592788 | 7:-6798848 | MsaT035066.1:CDS |
ATTTATCATGACTGGTGTGA+AGG | 0.595603 | 7:-6798344 | MsaT035066.1:CDS |
ATCATGGATAATCATGTCAT+GGG | 0.596657 | 7:-6798236 | MsaT035066.1:CDS |
ATGGTTCTTGATGTTGCTAG+AGG | 0.599266 | 7:-6798764 | MsaT035066.1:CDS |
GGACCTTGAGGTTGAGACAC+CGG | 0.603940 | 7:-6799975 | MsaT035066.1:CDS |
TGAGGAGATTGATGAGCACA+TGG | 0.608132 | 7:-6799462 | MsaT035066.1:CDS |
GCTGCTGCCGAAGAAACCAC+CGG | 0.632317 | 7:-6798714 | MsaT035066.1:CDS |
GTTCCAAACAGTGAATATGT+TGG | 0.638555 | 7:-6798566 | MsaT035066.1:CDS |
TGATGTTTGTCTGTCCCCAA+GGG | 0.640021 | 7:-6799549 | MsaT035066.1:CDS |
AGTCGTGTCTGAATTCAGCT+GGG | 0.650130 | 7:-6799882 | MsaT035066.1:CDS |
GTTCCCATATCAGATGATGA+CGG | 0.650347 | 7:-6799836 | MsaT035066.1:CDS |
TTGCAGTGTTGATTCAACTG+AGG | 0.652343 | 7:-6799741 | MsaT035066.1:CDS |
GGTTGAGACACCGGACGATG+AGG | 0.652720 | 7:-6799966 | MsaT035066.1:CDS |
GTACCAGGACAAATGCAACC+TGG | 0.653643 | 7:-6798264 | MsaT035066.1:CDS |
CGAAGCGTTTCCGACATCTG+TGG | 0.656101 | 7:-6800086 | MsaT035066.1:CDS |
TCACGGAAAAGATGATACCA+AGG | 0.660959 | 7:-6799798 | MsaT035066.1:CDS |
GCGTGTAAGGTCTCATGTGG+TGG | 0.667853 | 7:+6798170 | None:intergenic |
GAAGAAAACAGGCTCCCTTG+GGG | 0.672057 | 7:+6799535 | None:intergenic |
TGACTGAAAATCAACAGATG+CGG | 0.676499 | 7:+6797956 | None:intergenic |
AACTTGAAGAAGCTGCCATG+AGG | 0.680892 | 7:-6798652 | MsaT035066.1:CDS |
GTAGCAACACGTCGATCCGG+TGG | 0.683075 | 7:+6798698 | None:intergenic |
ACGAGAACCACTGAATAACA+AGG | 0.693448 | 7:-6800029 | MsaT035066.1:CDS |
ATGTATGGTACTGTATGTGA+AGG | 0.700288 | 7:-6798395 | MsaT035066.1:CDS |
TTGGCGTGTAAGGTCTCATG+TGG | 0.709886 | 7:+6798167 | None:intergenic |
GAGTCAATTACTCCAAACGA+CGG | 0.734363 | 7:+6799215 | None:intergenic |
ACAGGCTGAAGAAATCAAGG+AGG | 0.749004 | 7:-6799348 | MsaT035066.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 6797383 | 6800203 | 6797383 | ID=MsaG035066 |
Chr7 | mRNA | 6797383 | 6800203 | 6797383 | ID=MsaT035066.1;Parent=MsaG035066 |
Chr7 | exon | 6797383 | 6797412 | 6797383 | ID=MsaT035066.1.exon3;Parent=MsaT035066.1 |
Chr7 | CDS | 6797383 | 6797412 | 6797383 | ID=cds.MsaT035066.1;Parent=MsaT035066.1 |
Chr7 | exon | 6797926 | 6798885 | 6797926 | ID=MsaT035066.1.exon2;Parent=MsaT035066.1 |
Chr7 | CDS | 6797926 | 6798885 | 6797926 | ID=cds.MsaT035066.1;Parent=MsaT035066.1 |
Chr7 | exon | 6799226 | 6800203 | 6799226 | ID=MsaT035066.1.exon1;Parent=MsaT035066.1 |
Chr7 | CDS | 6799226 | 6800203 | 6799226 | ID=cds.MsaT035066.1;Parent=MsaT035066.1 |
Gene Sequence |
Protein sequence |