Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035151 | XP_039687805.1 | 47.015 | 268 | 105 | 5 | 1 | 255 | 37 | 280 | 9.18e-65 | 239 |
MsaG035151 | XP_039687805.1 | 62.162 | 370 | 139 | 1 | 223 | 592 | 461 | 829 | 1.90e-156 | 481 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035151 | sp|Q9SZL8|FRS5_ARATH | 27.881 | 269 | 188 | 3 | 183 | 451 | 387 | 649 | 2.26e-28 | 124 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035151 | tr|A0A2K3LMT7|A0A2K3LMT7_TRIPR | 59.932 | 292 | 116 | 1 | 302 | 592 | 1 | 292 | 1.97e-120 | 368 |
Gene ID | Type | Classification |
---|---|---|
MsaG035151 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG005886 | MsaG035151 | 0.835730 | 2.583284e-56 | 8.844232e-54 |
MsaG007241 | MsaG035151 | 0.803825 | 4.883136e-49 | 7.204008e-47 |
MsaG007315 | MsaG035151 | 0.805600 | 2.088080e-49 | 3.210103e-47 |
MsaG009389 | MsaG035151 | 0.804686 | 3.237956e-49 | 4.873140e-47 |
MsaG017412 | MsaG035151 | 0.812543 | 6.913424e-51 | 1.256658e-48 |
MsaG017842 | MsaG035151 | 0.823650 | 2.183462e-53 | 5.294604e-51 |
MsaG017873 | MsaG035151 | 0.806554 | 1.318474e-49 | 2.073142e-47 |
MsaG019275 | MsaG035151 | 0.802020 | 1.147743e-48 | 1.624360e-46 |
MsaG019308 | MsaG035151 | 0.808311 | 5.611658e-50 | 9.200655e-48 |
MsaG026022 | MsaG035151 | 0.801354 | 1.569657e-48 | 2.188147e-46 |
MsaG035151 | MsaG043788 | 0.811510 | 1.158474e-50 | 2.052689e-48 |
MsaG035151 | MsaG045548 | 0.808372 | 5.447907e-50 | 8.945258e-48 |
MsaG035151 | MsaG045549 | 0.825140 | 9.782847e-54 | 2.470313e-51 |
MsaG035151 | MsaG045743 | 0.814813 | 2.199754e-51 | 4.232382e-49 |
MsaG035151 | MsaG047011 | 0.812063 | 8.791669e-51 | 1.579034e-48 |
MsaG035151 | MsaG000635 | 0.818698 | 2.986829e-52 | 6.347785e-50 |
MsaG035151 | MsaG014827 | 0.870442 | 2.962354e-66 | 3.496763e-63 |
MsaG035151 | MsaG030607 | 0.845438 | 7.621329e-59 | 3.542980e-56 |
MsaG035151 | MsaG030007 | 0.811634 | 1.089130e-50 | 1.935671e-48 |
MsaG035151 | MsaG033460 | 0.810575 | 1.843063e-50 | 3.191835e-48 |
MsaG035151 | MsaG039788 | 0.806912 | 1.108389e-49 | 1.757499e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035151 | MtrunA17_Chr1g0203051 | 69.091 | 220 | 59 | 1 | 221 | 431 | 419 | 638 | 3.28e-102 | 323 |
MsaG035151 | MtrunA17_Chr1g0203051 | 64.414 | 222 | 55 | 1 | 1 | 222 | 1 | 198 | 5.42e-90 | 291 |
MsaG035151 | MtrunA17_Chr2g0308841 | 43.721 | 215 | 121 | 0 | 221 | 435 | 12 | 226 | 1.64e-62 | 207 |
MsaG035151 | MtrunA17_Chr8g0389811 | 44.970 | 169 | 92 | 1 | 47 | 214 | 27 | 195 | 3.58e-46 | 162 |
MsaG035151 | MtrunA17_Chr2g0287651 | 33.735 | 249 | 158 | 2 | 226 | 467 | 422 | 670 | 1.45e-37 | 149 |
MsaG035151 | MtrunA17_Chr2g0287651 | 30.270 | 185 | 125 | 2 | 39 | 222 | 13 | 194 | 5.21e-20 | 94.7 |
MsaG035151 | MtrunA17_Chr2g0331371 | 43.846 | 130 | 73 | 0 | 82 | 211 | 34 | 163 | 9.93e-32 | 122 |
MsaG035151 | MtrunA17_Chr5g0448511 | 28.700 | 223 | 158 | 1 | 217 | 439 | 179 | 400 | 1.29e-27 | 117 |
MsaG035151 | MtrunA17_Chr1g0171741 | 34.848 | 198 | 125 | 4 | 22 | 218 | 53 | 247 | 1.94e-27 | 111 |
MsaG035151 | MtrunA17_Chr6g0473421 | 40.336 | 119 | 69 | 2 | 82 | 198 | 34 | 152 | 1.69e-26 | 105 |
MsaG035151 | MtrunA17_Chr1g0202341 | 25.271 | 277 | 192 | 4 | 202 | 467 | 378 | 650 | 3.26e-25 | 110 |
MsaG035151 | MtrunA17_Chr1g0172931 | 43.243 | 111 | 63 | 0 | 75 | 185 | 48 | 158 | 3.65e-25 | 102 |
MsaG035151 | MtrunA17_Chr5g0448761 | 27.111 | 225 | 163 | 1 | 222 | 446 | 412 | 635 | 4.39e-25 | 110 |
MsaG035151 | MtrunA17_Chr2g0287061 | 30.804 | 224 | 150 | 3 | 217 | 439 | 485 | 704 | 5.97e-24 | 107 |
MsaG035151 | MtrunA17_Chr1g0207551 | 28.333 | 240 | 163 | 5 | 203 | 436 | 353 | 589 | 2.58e-23 | 105 |
MsaG035151 | MtrunA17_Chr3g0118611 | 29.464 | 224 | 145 | 5 | 223 | 441 | 291 | 506 | 6.21e-23 | 103 |
MsaG035151 | MtrunA17_Chr5g0440451 | 28.571 | 217 | 150 | 3 | 223 | 438 | 394 | 606 | 5.75e-22 | 100 |
MsaG035151 | MtrunA17_Chr5g0441581 | 29.167 | 216 | 147 | 2 | 226 | 436 | 369 | 583 | 1.42e-21 | 99.4 |
MsaG035151 | MtrunA17_Chr6g0477261 | 30.594 | 219 | 141 | 6 | 226 | 436 | 230 | 445 | 5.19e-21 | 97.4 |
MsaG035151 | MtrunA17_Chr8g0363841 | 26.047 | 215 | 158 | 1 | 226 | 439 | 366 | 580 | 5.27e-21 | 97.4 |
MsaG035151 | MtrunA17_Chr3g0080351 | 28.821 | 229 | 155 | 5 | 210 | 436 | 401 | 623 | 3.28e-20 | 95.1 |
MsaG035151 | MtrunA17_Chr2g0324011 | 24.766 | 214 | 160 | 1 | 226 | 439 | 359 | 571 | 5.73e-20 | 94.0 |
MsaG035151 | MtrunA17_Chr2g0296781 | 30.137 | 219 | 142 | 5 | 226 | 436 | 341 | 556 | 8.16e-20 | 94.0 |
MsaG035151 | MtrunA17_Chr2g0329031 | 27.966 | 236 | 157 | 4 | 204 | 435 | 334 | 560 | 3.27e-19 | 92.0 |
MsaG035151 | MtrunA17_Chr3g0082121 | 28.372 | 215 | 149 | 3 | 226 | 440 | 385 | 594 | 1.54e-18 | 89.7 |
MsaG035151 | MtrunA17_Chr6g0458391 | 27.962 | 211 | 150 | 2 | 226 | 436 | 557 | 765 | 2.40e-18 | 89.4 |
MsaG035151 | MtrunA17_Chr6g0458391 | 29.310 | 232 | 137 | 10 | 25 | 240 | 2 | 222 | 2.21e-13 | 73.6 |
MsaG035151 | MtrunA17_Chr1g0198761 | 22.096 | 353 | 260 | 7 | 224 | 572 | 405 | 746 | 2.74e-18 | 89.0 |
MsaG035151 | MtrunA17_Chr1g0196541 | 29.224 | 219 | 144 | 5 | 226 | 436 | 341 | 556 | 3.76e-18 | 88.6 |
MsaG035151 | MtrunA17_Chr1g0203721 | 25.806 | 217 | 147 | 3 | 226 | 436 | 415 | 623 | 4.24e-18 | 88.6 |
MsaG035151 | MtrunA17_Chr2g0291581 | 26.749 | 243 | 166 | 7 | 202 | 436 | 383 | 621 | 7.00e-18 | 87.8 |
MsaG035151 | MtrunA17_Chr2g0276841 | 25.943 | 212 | 151 | 3 | 222 | 433 | 421 | 626 | 1.33e-14 | 77.0 |
MsaG035151 | MtrunA17_Chr2g0290391 | 23.144 | 229 | 165 | 3 | 226 | 454 | 414 | 631 | 1.70e-13 | 73.6 |
MsaG035151 | MtrunA17_Chr8g0366311 | 48.333 | 60 | 31 | 0 | 75 | 134 | 51 | 110 | 2.17e-13 | 67.0 |
MsaG035151 | MtrunA17_Chr7g0228061 | 43.299 | 97 | 48 | 2 | 509 | 601 | 1 | 94 | 4.73e-13 | 65.5 |
MsaG035151 | MtrunA17_Chr2g0294841 | 21.220 | 377 | 251 | 9 | 218 | 566 | 392 | 750 | 2.35e-12 | 70.1 |
MsaG035151 | MtrunA17_Chr2g0329361 | 32.121 | 165 | 101 | 5 | 46 | 207 | 9 | 165 | 1.87e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035151 | AT4G38180.1 | 27.881 | 269 | 188 | 3 | 183 | 451 | 387 | 649 | 2.29e-29 | 124 |
MsaG035151 | AT3G06250.2 | 26.712 | 292 | 202 | 5 | 146 | 436 | 424 | 704 | 8.06e-26 | 113 |
MsaG035151 | AT3G06250.1 | 26.712 | 292 | 202 | 5 | 146 | 436 | 424 | 704 | 8.06e-26 | 113 |
MsaG035151 | AT3G06250.3 | 26.712 | 292 | 202 | 5 | 146 | 436 | 424 | 704 | 8.06e-26 | 113 |
MsaG035151 | AT5G18960.2 | 25.685 | 292 | 205 | 5 | 146 | 436 | 448 | 728 | 1.95e-24 | 108 |
MsaG035151 | AT5G18960.1 | 25.685 | 292 | 205 | 5 | 146 | 436 | 448 | 728 | 1.95e-24 | 108 |
MsaG035151 | AT4G38170.1 | 27.488 | 211 | 152 | 1 | 226 | 436 | 190 | 399 | 3.21e-23 | 104 |
MsaG035151 | AT2G27110.2 | 27.189 | 217 | 155 | 2 | 223 | 439 | 369 | 582 | 6.78e-23 | 104 |
MsaG035151 | AT2G27110.1 | 27.189 | 217 | 155 | 2 | 223 | 439 | 369 | 582 | 6.78e-23 | 104 |
MsaG035151 | AT2G27110.3 | 27.189 | 217 | 155 | 2 | 223 | 439 | 224 | 437 | 9.26e-23 | 103 |
MsaG035151 | AT1G76320.2 | 26.974 | 304 | 192 | 9 | 172 | 469 | 292 | 571 | 2.80e-22 | 102 |
MsaG035151 | AT1G76320.1 | 26.974 | 304 | 192 | 9 | 172 | 469 | 292 | 571 | 2.81e-22 | 102 |
MsaG035151 | AT1G76320.4 | 26.974 | 304 | 192 | 9 | 172 | 469 | 292 | 571 | 2.81e-22 | 102 |
MsaG035151 | AT1G76320.3 | 25.000 | 384 | 237 | 12 | 172 | 532 | 292 | 647 | 5.04e-22 | 101 |
MsaG035151 | AT4G15090.1 | 26.697 | 221 | 154 | 3 | 224 | 441 | 399 | 614 | 1.56e-20 | 96.7 |
MsaG035151 | AT4G15090.5 | 26.697 | 221 | 154 | 3 | 224 | 441 | 399 | 614 | 1.56e-20 | 96.7 |
MsaG035151 | AT4G15090.3 | 26.697 | 221 | 154 | 3 | 224 | 441 | 399 | 614 | 1.56e-20 | 96.7 |
MsaG035151 | AT4G15090.2 | 26.697 | 221 | 154 | 3 | 224 | 441 | 399 | 614 | 1.56e-20 | 96.7 |
MsaG035151 | AT4G15090.4 | 26.697 | 221 | 154 | 3 | 224 | 441 | 399 | 614 | 1.56e-20 | 96.7 |
MsaG035151 | AT2G32250.2 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 3.06e-19 | 92.4 |
MsaG035151 | AT2G32250.4 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 3.06e-19 | 92.4 |
MsaG035151 | AT2G32250.6 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 3.23e-19 | 92.4 |
MsaG035151 | AT2G32250.1 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 3.23e-19 | 92.4 |
MsaG035151 | AT2G32250.3 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 3.23e-19 | 92.4 |
MsaG035151 | AT2G32250.7 | 25.000 | 208 | 154 | 2 | 226 | 433 | 304 | 509 | 3.88e-19 | 92.0 |
MsaG035151 | AT2G32250.8 | 25.000 | 208 | 154 | 2 | 226 | 433 | 304 | 509 | 3.90e-19 | 92.0 |
MsaG035151 | AT2G32250.5 | 25.000 | 208 | 154 | 2 | 226 | 433 | 345 | 550 | 4.51e-19 | 92.0 |
MsaG035151 | AT3G22170.2 | 25.592 | 211 | 155 | 2 | 226 | 436 | 410 | 618 | 6.40e-19 | 91.7 |
MsaG035151 | AT3G22170.1 | 25.592 | 211 | 155 | 2 | 226 | 436 | 410 | 618 | 6.40e-19 | 91.7 |
MsaG035151 | AT1G52520.1 | 27.888 | 251 | 170 | 5 | 202 | 444 | 399 | 646 | 3.65e-18 | 89.0 |
MsaG035151 | AT4G19990.6 | 24.413 | 213 | 157 | 3 | 226 | 436 | 349 | 559 | 9.73e-16 | 81.3 |
MsaG035151 | AT4G19990.2 | 24.413 | 213 | 157 | 3 | 226 | 436 | 349 | 559 | 9.73e-16 | 81.3 |
MsaG035151 | AT4G19990.3 | 24.413 | 213 | 157 | 3 | 226 | 436 | 349 | 559 | 1.16e-15 | 81.3 |
MsaG035151 | AT4G19990.4 | 24.413 | 213 | 157 | 3 | 226 | 436 | 349 | 559 | 1.16e-15 | 81.3 |
MsaG035151 | AT4G19990.7 | 24.413 | 213 | 157 | 3 | 226 | 436 | 363 | 573 | 1.31e-15 | 80.9 |
MsaG035151 | AT4G19990.5 | 24.413 | 213 | 157 | 3 | 226 | 436 | 349 | 559 | 1.42e-15 | 80.9 |
MsaG035151 | AT4G19990.1 | 24.413 | 213 | 157 | 3 | 226 | 436 | 292 | 502 | 1.66e-15 | 80.5 |
MsaG035151 | AT1G80010.1 | 27.679 | 224 | 151 | 6 | 221 | 436 | 441 | 661 | 2.25e-14 | 77.0 |
MsaG035151 | AT1G10240.2 | 24.057 | 212 | 155 | 2 | 222 | 433 | 399 | 604 | 7.60e-14 | 75.1 |
MsaG035151 | AT1G10240.1 | 24.057 | 212 | 155 | 2 | 222 | 433 | 399 | 604 | 7.60e-14 | 75.1 |
Find 123 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATCACAAGAACTGTTTA+TGG | 0.130233 | 7:+8100185 | MsaT035151.1:CDS |
TTGTCACAACATACTTAAAA+AGG | 0.135810 | 7:-8099576 | None:intergenic |
TTGCGTGTATGTTCTATAAT+TGG | 0.249356 | 7:+8098153 | MsaT035151.1:CDS |
AACTGCATCCTTTGCTCCTT+TGG | 0.259232 | 7:-8099773 | None:intergenic |
ATTGAACTACGCAAATATTC+TGG | 0.273204 | 7:-8099910 | None:intergenic |
CTTCAACAAATGAATGATTA+TGG | 0.280715 | 7:-8098415 | None:intergenic |
GTACATACAAATGGAGAAAT+AGG | 0.308768 | 7:+8100009 | MsaT035151.1:CDS |
GTATGTCTAATAATTCTATA+CGG | 0.312147 | 7:+8097886 | MsaT035151.1:CDS |
TGTGAACTCGGTTGCTGATT+TGG | 0.316950 | 7:+8098064 | MsaT035151.1:CDS |
CGGATGCGGCGGAAGGGTGG+AGG | 0.331060 | 7:+8100042 | MsaT035151.1:CDS |
CATGAGATATAGAGAGATTC+AGG | 0.331476 | 7:+8099390 | MsaT035151.1:CDS |
GATGAACTAGTTACTGAGTT+TGG | 0.343394 | 7:+8099169 | MsaT035151.1:CDS |
ATGCGGCGGAAGGGTGGAGG+GGG | 0.389374 | 7:+8100045 | MsaT035151.1:CDS |
AGCTAAAATGAAAGTTCATC+TGG | 0.394103 | 7:+8098349 | MsaT035151.1:CDS |
GCATCCAATGCAAATAGTTC+AGG | 0.403942 | 7:+8099799 | MsaT035151.1:CDS |
GATGCGGCGGAAGGGTGGAG+GGG | 0.403985 | 7:+8100044 | MsaT035151.1:CDS |
GAGGGTTTGCATTCTGAGTT+TGG | 0.412582 | 7:+8099301 | MsaT035151.1:CDS |
ATACACGCAACTTCGCGATC+TGG | 0.417567 | 7:-8098140 | None:intergenic |
GTGGTATTGTTGGTCACAAC+CGG | 0.418133 | 7:+8100130 | MsaT035151.1:CDS |
CGTTTGTAGAAAGATGTAAA+AGG | 0.419458 | 7:+8099857 | MsaT035151.1:CDS |
TTTGCGTAGTTCAATTGAAA+TGG | 0.419574 | 7:+8099918 | MsaT035151.1:CDS |
TAAAACACAACACCGACAAC+TGG | 0.425854 | 7:+8099447 | MsaT035151.1:CDS |
TGTGGTTTATGTGGTATTGT+TGG | 0.427541 | 7:+8100120 | MsaT035151.1:CDS |
GTTTGTTGGAGGCAGTTGGC+AGG | 0.441120 | 7:+8099956 | MsaT035151.1:CDS |
ACCGGCAGTCGTGTAATATT+CGG | 0.445535 | 7:+8100148 | MsaT035151.1:CDS |
TATGTACACCAAGTCCAGAT+TGG | 0.455748 | 7:-8099993 | None:intergenic |
AGAGACACAGACAAGTTTGT+TGG | 0.456325 | 7:+8099942 | MsaT035151.1:CDS |
TGTATGTTCTATAATTGGTA+TGG | 0.456609 | 7:+8098158 | MsaT035151.1:CDS |
GGTGACGAAGTTTCCCAATC+TGG | 0.457928 | 7:+8099979 | MsaT035151.1:CDS |
ATTGTGTTGTGCTGCATAGA+TGG | 0.459706 | 7:+8099749 | MsaT035151.1:CDS |
GGACTTGGTGTACATACAAA+TGG | 0.461087 | 7:+8100000 | MsaT035151.1:CDS |
ACATAGGATGTTATAAATGC+AGG | 0.464894 | 7:-8099832 | None:intergenic |
GGATGCGGCGGAAGGGTGGA+GGG | 0.467562 | 7:+8100043 | MsaT035151.1:CDS |
CAATCCTGAACTATTTGCAT+TGG | 0.472693 | 7:-8099803 | None:intergenic |
CTATGCAGCACAACACAATC+AGG | 0.473374 | 7:-8099745 | None:intergenic |
TTTGTTGGAGGCAGTTGGCA+GGG | 0.474824 | 7:+8099957 | MsaT035151.1:CDS |
GTGGTTCTGCAATATCTTGA+TGG | 0.475275 | 7:+8100257 | MsaT035151.1:CDS |
GGTGCGCCGTTATCTGTTAG+AGG | 0.479154 | 7:+8100066 | MsaT035151.1:CDS |
CCGTTATCTGTTAGAGGAGA+TGG | 0.479574 | 7:+8100072 | MsaT035151.1:CDS |
ATCCTAGGAGAGATATTGAA+TGG | 0.480712 | 7:+8099602 | MsaT035151.1:CDS |
AATTGGTATGGGTGTCTACA+TGG | 0.490003 | 7:+8098170 | MsaT035151.1:CDS |
GCAAATAAGTGTGGTTTATG+TGG | 0.497308 | 7:+8100111 | MsaT035151.1:CDS |
CCATCTCCTCTAACAGATAA+CGG | 0.498320 | 7:-8100072 | None:intergenic |
ATGTACACCAAGTCCAGATT+GGG | 0.498519 | 7:-8099992 | None:intergenic |
CTTGAAAGAAATGAGTATTG+AGG | 0.500117 | 7:+8098097 | MsaT035151.1:CDS |
TCACTCATCTTTCTATGTGC+AGG | 0.502889 | 7:-8098458 | None:intergenic |
TGCTTCTAAGTTGTACACTA+AGG | 0.504112 | 7:+8099477 | MsaT035151.1:CDS |
CCACGGATGCGGCGGAAGGG+TGG | 0.505191 | 7:+8100039 | MsaT035151.1:CDS |
GAAGTTTCCCAATCTGGACT+TGG | 0.510070 | 7:+8099985 | MsaT035151.1:CDS |
ACTAGTTACTGAGTTTGGAT+TGG | 0.510567 | 7:+8099174 | MsaT035151.1:CDS |
TGACATCCACACCTAGTCAA+TGG | 0.514739 | 7:-8098326 | None:intergenic |
ACCTCAGATTCACTGCCATC+AGG | 0.516796 | 7:-8097414 | None:intergenic |
TCCACCACGGATGCGGCGGA+AGG | 0.517600 | 7:+8100035 | MsaT035151.1:CDS |
TTGTTGGAGGCAGTTGGCAG+GGG | 0.517881 | 7:+8099958 | MsaT035151.1:CDS |
TTCTGGTTTCCCACACTCAA+AGG | 0.519253 | 7:-8099893 | None:intergenic |
GATACTAACAATGAGGGTAC+TGG | 0.519647 | 7:+8098017 | MsaT035151.1:CDS |
TTGACGTGTTTGAGCGTAAG+TGG | 0.523674 | 7:+8099146 | MsaT035151.1:CDS |
AGAGTTGTTAGAAATAGAGA+TGG | 0.531458 | 7:+8098212 | MsaT035151.1:CDS |
ATTCTATACGGGACAGTGGT+GGG | 0.534564 | 7:+8097898 | MsaT035151.1:CDS |
TAGGAAATCCACCACGGATG+CGG | 0.536770 | 7:+8100028 | MsaT035151.1:CDS |
CCACCCTTCCGCCGCATCCG+TGG | 0.537115 | 7:-8100039 | None:intergenic |
GACACAGACAAGTTTGTTGG+AGG | 0.537180 | 7:+8099945 | MsaT035151.1:CDS |
TGAGTTTGGTAAATATGTCT+CGG | 0.537976 | 7:+8099315 | MsaT035151.1:CDS |
TATGTCTAATAATTCTATAC+GGG | 0.546526 | 7:+8097887 | MsaT035151.1:CDS |
ATGCTCACAGGCAATGCCTA+AGG | 0.547910 | 7:-8099683 | None:intergenic |
TCCTAGGAGAGATATTGAAT+GGG | 0.551491 | 7:+8099603 | MsaT035151.1:CDS |
AGAACAACTTCTAGATGTGA+GGG | 0.552168 | 7:+8099283 | MsaT035151.1:CDS |
AAGCAGAAGTCTCCAGTTGT+CGG | 0.553450 | 7:-8099459 | None:intergenic |
ACCCATTCAATATCTCTCCT+AGG | 0.553591 | 7:-8099604 | None:intergenic |
TAAGGTTTCAAGTCTCTGAC+AGG | 0.554391 | 7:-8099665 | None:intergenic |
TTGGATTGGAAGAAAACTTG+TGG | 0.554615 | 7:+8099188 | MsaT035151.1:CDS |
ATGTTGTGACAAAATATCCT+AGG | 0.556091 | 7:+8099587 | MsaT035151.1:CDS |
TGTCAGAGACTTGAAACCTT+AGG | 0.557387 | 7:+8099667 | MsaT035151.1:CDS |
CACAAACCATTGACTAGGTG+TGG | 0.559197 | 7:+8098320 | MsaT035151.1:CDS |
CATAGGATGTTATAAATGCA+GGG | 0.562412 | 7:-8099831 | None:intergenic |
TGTAGAAAGATGTAAAAGGA+TGG | 0.562473 | 7:+8099861 | MsaT035151.1:CDS |
TAGAACAACTTCTAGATGTG+AGG | 0.562728 | 7:+8099282 | MsaT035151.1:CDS |
TCCGAATATTACACGACTGC+CGG | 0.564876 | 7:-8100149 | None:intergenic |
CCCTTCCGCCGCATCCGTGG+TGG | 0.565538 | 7:-8100036 | None:intergenic |
TCTTTCTACAAACGTAACAT+AGG | 0.565768 | 7:-8099848 | None:intergenic |
ACATTTCTTTGTCATAGAGA+AGG | 0.568976 | 7:+8098251 | MsaT035151.1:CDS |
AAATGAAAGTTCATCTGGAT+AGG | 0.570700 | 7:+8098354 | MsaT035151.1:CDS |
ACAAGTTTGTTGGAGGCAGT+TGG | 0.571325 | 7:+8099952 | MsaT035151.1:CDS |
GTATGTTCTATAATTGGTAT+GGG | 0.575412 | 7:+8098159 | MsaT035151.1:CDS |
TGTATACGAAGCGGAAGATG+TGG | 0.576774 | 7:+8099221 | MsaT035151.1:CDS |
CCACCACGGATGCGGCGGAA+GGG | 0.579404 | 7:+8100036 | MsaT035151.1:CDS |
GAGGAGATGGCAAGTTTAAG+CGG | 0.581195 | 7:+8100085 | MsaT035151.1:CDS |
ATCTCATGTAGTTCAACCAA+CGG | 0.584851 | 7:-8099375 | None:intergenic |
TGGGTGTCTACATGGATTTG+CGG | 0.586574 | 7:+8098178 | MsaT035151.1:CDS |
AATTCTATACGGGACAGTGG+TGG | 0.588444 | 7:+8097897 | MsaT035151.1:CDS |
AAAGTTTAATGTACCAACGT+TGG | 0.588632 | 7:-8098382 | None:intergenic |
GTGACTGCAGCCTTTGAGTG+TGG | 0.590606 | 7:+8099883 | MsaT035151.1:CDS |
TGCTGAAGATACTAACAATG+AGG | 0.600458 | 7:+8098010 | MsaT035151.1:CDS |
TTGTTGAAGAAAAGTTTGAG+AGG | 0.607212 | 7:+8098429 | MsaT035151.1:CDS |
AACACAAATGAGATGCTCAC+AGG | 0.607482 | 7:-8099695 | None:intergenic |
TAGATGGTCCAAAGGAGCAA+AGG | 0.608745 | 7:+8099765 | MsaT035151.1:CDS |
TTGTCATAGAGAAGGCAAGA+GGG | 0.611482 | 7:+8098259 | MsaT035151.1:CDS |
AAGCGGAGAGCAAATAAGTG+TGG | 0.612694 | 7:+8100102 | MsaT035151.1:CDS |
GAAATCCACCACGGATGCGG+CGG | 0.615822 | 7:+8100031 | MsaT035151.1:CDS |
AAGAGCACAAACCATTGACT+AGG | 0.618322 | 7:+8098315 | MsaT035151.1:CDS |
TGAGTATTGAGGAGATAACA+AGG | 0.633107 | 7:+8098108 | MsaT035151.1:CDS |
AGATGGAACCAGTGTGAACT+CGG | 0.633966 | 7:+8098052 | MsaT035151.1:CDS |
TCTGAAGAAGAGTATGAAGA+CGG | 0.639584 | 7:+8097927 | MsaT035151.1:CDS |
ATGCAAATAGTTCAGGATTG+CGG | 0.640431 | 7:+8099806 | MsaT035151.1:CDS |
ACGACAAGCTCTTTCAAGCA+CGG | 0.644225 | 7:-8099521 | None:intergenic |
TGACTGCAGCCTTTGAGTGT+GGG | 0.650037 | 7:+8099884 | MsaT035151.1:CDS |
ATCAGCAACCGAGTTCACAC+TGG | 0.654881 | 7:-8098060 | None:intergenic |
GTATACGAAGCGGAAGATGT+GGG | 0.654976 | 7:+8099222 | MsaT035151.1:CDS |
ACCTGATGGCAGTGAATCTG+AGG | 0.655306 | 7:+8097413 | MsaT035151.1:CDS |
TGGATAGGAGTTGCCAACGT+TGG | 0.656025 | 7:+8098369 | MsaT035151.1:CDS |
TGGGCTACTGCCCATATCCG+AGG | 0.656972 | 7:+8099241 | MsaT035151.1:CDS |
TGACGTGTTTGAGCGTAAGT+GGG | 0.661878 | 7:+8099147 | MsaT035151.1:CDS |
GCTGAAGATACTAACAATGA+GGG | 0.662663 | 7:+8098011 | MsaT035151.1:CDS |
CTGAAGATGAAGATGAAGAG+TGG | 0.668315 | 7:+8100238 | MsaT035151.1:CDS |
CCACGCATGAATGAACCTGA+TGG | 0.674867 | 7:+8097399 | MsaT035151.1:CDS |
CCATCAGGTTCATTCATGCG+TGG | 0.675591 | 7:-8097399 | None:intergenic |
AATAATTCTATACGGGACAG+TGG | 0.681514 | 7:+8097894 | MsaT035151.1:CDS |
GTGCTGCATAGATGGTCCAA+AGG | 0.681647 | 7:+8099757 | MsaT035151.1:CDS |
TTTGTCATAGAGAAGGCAAG+AGG | 0.683748 | 7:+8098258 | MsaT035151.1:CDS |
TGTCAGAGATGTATACGAAG+CGG | 0.691245 | 7:+8099212 | MsaT035151.1:CDS |
GAAGATGCAGAAGACACTAA+CGG | 0.703149 | 7:+8097957 | MsaT035151.1:CDS |
GAGAAATAGGAAATCCACCA+CGG | 0.710187 | 7:+8100022 | MsaT035151.1:CDS |
ATCGAGAGAAAATCACAACG+AGG | 0.791638 | 7:+8099550 | MsaT035151.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 8097363 | 8100388 | 8097363 | ID=MsaG035151 |
Chr7 | mRNA | 8097363 | 8100388 | 8097363 | ID=MsaT035151.1;Parent=MsaG035151 |
Chr7 | exon | 8097363 | 8097434 | 8097363 | ID=MsaT035151.1.exon1;Parent=MsaT035151.1 |
Chr7 | CDS | 8097363 | 8097434 | 8097363 | ID=cds.MsaT035151.1;Parent=MsaT035151.1 |
Chr7 | exon | 8097885 | 8098476 | 8097885 | ID=MsaT035151.1.exon2;Parent=MsaT035151.1 |
Chr7 | CDS | 8097885 | 8098476 | 8097885 | ID=cds.MsaT035151.1;Parent=MsaT035151.1 |
Chr7 | exon | 8099143 | 8100278 | 8099143 | ID=MsaT035151.1.exon3;Parent=MsaT035151.1 |
Chr7 | CDS | 8099143 | 8100278 | 8099143 | ID=cds.MsaT035151.1;Parent=MsaT035151.1 |
Chr7 | exon | 8100377 | 8100388 | 8100377 | ID=MsaT035151.1.exon4;Parent=MsaT035151.1 |
Chr7 | CDS | 8100377 | 8100388 | 8100377 | ID=cds.MsaT035151.1;Parent=MsaT035151.1 |
Gene Sequence |
Protein sequence |