AlfalfaGEDB | MsaG035213

M. sativa ssp. caerulea / MsaG035213

KEGG: K02218
GO: -
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035213	XP_003621013.1	100.000	599	0	0	1	599	1	599	0.0	1258

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035213	sp\|Q852L0\|HD16N_ORYSJ	78.583	593	125	2	7	599	117	707	0.0	1004

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035213	tr\|G7KWQ1\|G7KWQ1_MEDTR	100.000	599	0	0	1	599	1	599	0.0	1258

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004010	MsaG035213	0.817253	6.311843e-52	1.292366e-49
MsaG006096	MsaG035213	0.801327	1.589536e-48	2.214553e-46
MsaG007717	MsaG035213	0.815310	1.708897e-51	3.329472e-49
MsaG009180	MsaG035213	0.843807	2.085363e-58	9.189056e-56
MsaG011565	MsaG035213	0.810784	1.662044e-50	2.893070e-48
MsaG012675	MsaG035213	0.846463	4.025954e-59	1.936193e-56
MsaG020174	MsaG035213	0.868130	1.657120e-65	1.777211e-62
MsaG022880	MsaG035213	0.815642	1.442853e-51	2.834919e-49
MsaG023078	MsaG035213	0.812210	8.167749e-51	1.472347e-48
MsaG028928	MsaG035213	0.829867	7.270910e-55	2.096354e-52
MsaG029986	MsaG035213	0.800202	2.691158e-48	3.655084e-46
MsaG030197	MsaG035213	0.809206	3.619923e-50	6.064238e-48
MsaG030455	MsaG035213	0.801783	1.282970e-48	1.806007e-46
MsaG031934	MsaG035213	0.819647	1.821101e-52	3.967748e-50
MsaG031939	MsaG035213	0.831776	2.488659e-55	7.581616e-53
MsaG035211	MsaG035213	0.800330	2.535129e-48	3.453214e-46
MsaG035212	MsaG035213	0.898242	1.465672e-76	6.770850e-73
MsaG035213	MsaG035214	0.828084	1.956981e-54	5.364066e-52
MsaG035213	MsaG035216	0.835912	2.325007e-56	8.003414e-54
MsaG035213	MsaG036482	0.845866	5.842740e-59	2.754830e-56
MsaG035213	MsaG041854	0.803712	5.152844e-49	7.582222e-47
MsaG035213	MsaG045646	0.839675	2.537675e-57	9.805875e-55
MsaG035213	MsaG006478	0.807321	9.092522e-50	1.455754e-47
MsaG035213	MsaG008054	0.817043	7.036072e-52	1.432866e-49
MsaG035213	MsaG014169	0.806902	1.114218e-49	1.766314e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035213	MtrunA17_Chr7g0214531	100.000	599	0	0	1	599	1	599	0.0	1258
MsaG035213	MtrunA17_Chr1g0213321	85.572	603	78	2	1	599	79	676	0.0	1105
MsaG035213	MtrunA17_Chr1g0146301	78.869	601	116	3	3	598	89	683	0.0	1019
MsaG035213	MtrunA17_Chr7g0253211	79.595	593	120	1	7	599	294	885	0.0	1018
MsaG035213	MtrunA17_Chr3g0140431	77.796	599	123	2	4	598	5	597	0.0	1010
MsaG035213	MtrunA17_Chr8g0340491	72.987	596	158	3	6	599	97	691	0.0	921
MsaG035213	MtrunA17_Chr1g0166821	39.100	289	157	6	31	316	6	278	4.64e-60	207
MsaG035213	MtrunA17_Chr2g0329981	38.710	279	154	5	37	312	9	273	6.96e-60	207
MsaG035213	MtrunA17_Chr4g0071031	38.351	279	155	5	37	312	9	273	8.02e-60	206
MsaG035213	MtrunA17_Chr2g0299661	37.993	279	156	5	37	312	9	273	2.24e-59	205
MsaG035213	MtrunA17_Chr7g0261501	38.516	283	157	5	37	316	9	277	5.50e-59	204
MsaG035213	MtrunA17_Chr1g0187571	38.754	289	158	6	31	316	6	278	3.83e-58	202
MsaG035213	MtrunA17_Chr1g0183631	37.716	289	161	6	31	316	5	277	1.53e-57	200
MsaG035213	MtrunA17_Chr8g0342821	37.276	279	157	6	37	312	9	272	6.67e-57	199
MsaG035213	MtrunA17_Chr6g0486611	36.268	284	164	5	37	317	9	278	1.62e-55	193
MsaG035213	MtrunA17_Chr8g0390211	36.735	294	166	7	27	317	2	278	5.46e-55	192
MsaG035213	MtrunA17_Chr1g0167261	36.860	293	164	6	29	316	4	280	2.68e-54	188
MsaG035213	MtrunA17_Chr1g0146151	35.439	285	165	6	31	312	5	273	6.24e-53	186
MsaG035213	MtrunA17_Chr3g0140071	35.088	285	166	6	31	312	5	273	8.81e-53	186

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035213	AT3G13670.1	85.050	602	84	2	1	598	103	702	0.0	1098
MsaG035213	AT2G25760.1	77.537	601	126	4	3	598	76	672	0.0	1011
MsaG035213	AT2G25760.2	77.318	604	125	6	3	598	76	675	0.0	1004
MsaG035213	AT5G18190.2	76.897	593	136	1	7	599	100	691	0.0	994
MsaG035213	AT5G18190.1	76.897	593	136	1	7	599	100	691	0.0	994
MsaG035213	AT3G03940.1	76.728	593	137	1	7	599	110	701	0.0	994
MsaG035213	AT3G03930.1	65.660	265	82	2	343	598	23	287	4.89e-124	367
MsaG035213	AT5G44100.1	38.408	289	159	6	31	316	5	277	1.46e-59	206
MsaG035213	AT5G44100.2	38.408	289	159	6	31	316	5	277	1.46e-59	206
MsaG035213	AT2G19470.1	38.516	283	157	5	37	316	9	277	1.63e-59	205
MsaG035213	AT1G03930.1	38.596	285	156	6	31	312	5	273	1.75e-59	206
MsaG035213	AT3G23340.1	38.754	289	158	6	31	316	5	277	4.58e-59	204
MsaG035213	AT4G14340.2	38.408	289	159	6	31	316	11	283	1.23e-58	201
MsaG035213	AT4G28540.1	38.062	289	160	6	31	316	9	281	1.53e-58	203
MsaG035213	AT4G26100.1	36.749	283	162	5	37	316	9	277	3.67e-58	202
MsaG035213	AT4G14340.1	38.408	289	159	6	31	316	11	283	3.77e-58	202
MsaG035213	AT4G28860.2	37.543	293	163	7	27	316	2	277	3.70e-57	197
MsaG035213	AT4G28860.1	37.543	293	163	7	27	316	2	277	1.47e-56	196
MsaG035213	AT1G04440.1	38.062	289	160	6	31	316	5	277	1.55e-56	198
MsaG035213	AT5G43320.1	38.062	289	160	6	31	316	5	277	1.81e-56	198
MsaG035213	AT4G28880.3	37.884	293	162	7	27	316	2	277	1.85e-56	196
MsaG035213	AT4G28880.2	37.884	293	162	7	27	316	2	277	1.85e-56	196
MsaG035213	AT4G28880.1	37.884	293	162	7	27	316	2	277	1.85e-56	196
MsaG035213	AT4G28880.4	37.884	293	162	7	27	316	2	277	1.85e-56	196
MsaG035213	AT1G72710.1	37.276	279	157	6	37	312	9	272	2.02e-56	197
MsaG035213	AT5G57015.1	36.042	283	164	5	37	316	9	277	2.86e-56	196
MsaG035213	AT5G43320.2	38.062	289	160	6	31	316	5	277	2.96e-56	194
MsaG035213	AT5G43320.3	38.062	289	160	6	31	316	5	277	2.96e-56	194
MsaG035213	AT3G23340.2	39.245	265	151	5	57	316	4	263	1.39e-53	189
MsaG035213	AT4G08800.1	32.509	283	142	6	37	316	9	245	2.56e-42	154

Find 162 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATCTCTGGGCACTTATTA+TGG	0.176547	7:-9066587	MsaT035213.1:CDS
CTTCCTTTATAATGTACTTT+AGG	0.233162	7:+9069633	None:intergenic
CATCTCTACCTTTGCTTCAT+TGG	0.235235	7:+9067611	None:intergenic
TGGCTTCTTGTTCCAATCTC+TGG	0.237696	7:-9066600	MsaT035213.1:CDS
AAAAGAAACCTGAACATATC+AGG	0.258582	7:+9068373	None:intergenic
TGAGCACCTTCAGTATTAAT+TGG	0.274374	7:+9067871	None:intergenic
GGTGGTAATGACCGTCTTAA+TGG	0.277319	7:-9069995	MsaT035213.1:CDS
AAACTTGGCAAAGGTGGATT+TGG	0.289497	7:-9070046	MsaT035213.1:CDS
TGCAAGTGTTCATGCTCATT+TGG	0.304706	7:-9068272	MsaT035213.1:CDS
AACAGTAAAGGTTGCAACTA+TGG	0.325296	7:-9069845	MsaT035213.1:CDS
GTTACCATGGCAAGGTTATC+AGG	0.332076	7:-9068179	MsaT035213.1:intron
AACCATTATCCCATCGTCTA+TGG	0.333296	7:+9064605	None:intergenic
TTTCTTGTTGATCTCGGATT+AGG	0.333361	7:-9068530	MsaT035213.1:intron
GTCCAAGCTTGTGGGATGTT+TGG	0.336979	7:-9069481	MsaT035213.1:CDS
TCTATAGCTGGGGTTACTAA+TGG	0.339143	7:-9066368	MsaT035213.1:CDS
CTTATTATGGATGCTGGAAC+TGG	0.352603	7:-9066574	MsaT035213.1:CDS
GGCTTCTTGTTCCAATCTCT+GGG	0.354817	7:-9066599	MsaT035213.1:CDS
TTTGTTGGTCGTCGAGTAAC+CGG	0.359465	7:-9070016	MsaT035213.1:CDS
TTCTTCTCTTGTGCTGTACC+TGG	0.364237	7:+9068557	None:intergenic
ATTGGCCGCAGTGCAGGATT+TGG	0.366177	7:+9067889	None:intergenic
TACCTTGCTTGCTTGTGCTA+TGG	0.369695	7:-9064350	MsaT035213.1:CDS
CATAATAAGTGCCCAGAGAT+TGG	0.371273	7:+9066588	None:intergenic
GACGATGGGATAATGGTTAC+AGG	0.373311	7:-9064600	MsaT035213.1:CDS
AGCAATGCATGCCACCATTT+CGG	0.376237	7:+9068768	None:intergenic
ATTTCCAAGCACACATGTTA+AGG	0.378927	7:-9064476	MsaT035213.1:intron
GGCCACTGCTGGAAGTCGTT+GGG	0.383031	7:-9065526	MsaT035213.1:CDS
ACCTTGCTTGCTTGTGCTAT+GGG	0.388384	7:-9064349	MsaT035213.1:CDS
GCAAGTGTTCATGCTCATTT+GGG	0.388698	7:-9068271	MsaT035213.1:CDS
CAGAAGCAGCATAGCATCTC+AGG	0.394079	7:+9068015	None:intergenic
CTTCTTGTTTATCCATTTGA+AGG	0.400317	7:+9065578	None:intergenic
TATTACATTACTTCTATAGC+TGG	0.401862	7:-9066380	MsaT035213.1:CDS
ATCCATAGACGATGGGATAA+TGG	0.409318	7:-9064607	MsaT035213.1:CDS
ATACCTAAAGTACATTATAA+AGG	0.411632	7:-9069636	MsaT035213.1:CDS
GATATTAGCTTGGAATAGTT+AGG	0.422192	7:+9067934	None:intergenic
ATTGATATCCATTGTGTAGC+AGG	0.425137	7:+9067650	None:intergenic
ACACATACCCTCTCAGGAAA+AGG	0.427758	7:+9071022	None:intergenic
GATAACCTTGCCATGGTAAC+CGG	0.435532	7:+9068182	None:intergenic
CTATAGCTGGGGTTACTAAT+GGG	0.437207	7:-9066367	MsaT035213.1:CDS
ACCAGCGCCCTGATATGTTC+AGG	0.437919	7:-9068381	MsaT035213.1:intron
TTCAAAGTGGAGAGGAAACT+TGG	0.443586	7:-9070061	MsaT035213.1:CDS
GCGAGTCTTTCCCCTTCAAA+TGG	0.445977	7:-9065590	MsaT035213.1:CDS
CACATACCCTCTCAGGAAAA+GGG	0.446418	7:+9071023	None:intergenic
GTATTAATTGGCCGCAGTGC+AGG	0.451258	7:+9067883	None:intergenic
TCTCTTGTGGTGATGTCAAA+AGG	0.451724	7:-9066341	MsaT035213.1:intron
GTTTCCTGAGTTTCGTCAGC+AGG	0.453762	7:+9064514	None:intergenic
CAGCATACCTCAGTGGCACC+GGG	0.458135	7:+9069971	None:intergenic
TAATACTGAAGGTGCTCAAA+AGG	0.460450	7:-9067866	MsaT035213.1:intron
TCAGCATACCTCAGTGGCAC+CGG	0.460949	7:+9069970	None:intergenic
TCCTTGTTTGATAGTGTGCT+TGG	0.461993	7:-9067913	MsaT035213.1:CDS
TGTGGAGTCATTGTCGATCT+TGG	0.469974	7:-9068746	MsaT035213.1:CDS
AAATTGTTTCTTGTTGATCT+CGG	0.470903	7:-9068536	MsaT035213.1:CDS
TTCATTATAGATATGTGCAT+GGG	0.475655	7:-9068613	MsaT035213.1:intron
GTGACTTCAATGGCCACTGC+TGG	0.476110	7:-9065537	MsaT035213.1:CDS
ATGTAGGATGTCTGCCGAAA+TGG	0.477227	7:-9068782	MsaT035213.1:intron
ATTACATTACTTCTATAGCT+GGG	0.477779	7:-9066379	MsaT035213.1:CDS
GGAATGGATCATGGAGCAAT+GGG	0.480666	7:-9066411	MsaT035213.1:CDS
GTTGTTATGTCACGGAATGC+TGG	0.481715	7:-9065501	MsaT035213.1:CDS
GAGAGGTAGATTGAATATTG+AGG	0.484728	7:-9067717	MsaT035213.1:CDS
TGGCAAAGGTGGATTTGGAC+AGG	0.492641	7:-9070041	MsaT035213.1:CDS
TTCCAAACATCCCACAAGCT+TGG	0.493712	7:+9069479	None:intergenic
CGTCTATGGATTCCCTCACT+AGG	0.494306	7:+9064619	None:intergenic
CATAGGACACATACCCTCTC+AGG	0.494559	7:+9071016	None:intergenic
TCGTCAGCAGGTCTTCGCCT+TGG	0.501723	7:+9064526	None:intergenic
ATCAAACAAGGATATTAGCT+TGG	0.504809	7:+9067924	None:intergenic
TGGCCACTGCTGGAAGTCGT+TGG	0.506701	7:-9065527	MsaT035213.1:CDS
AGGAAATGTCTGAAAGGAGT+AGG	0.507896	7:+9067991	None:intergenic
GAATGCTGGATTCAGTGATC+AGG	0.508380	7:-9065487	MsaT035213.1:intron
CATGCTTGGTCCAAGCTTGT+GGG	0.512086	7:-9069489	MsaT035213.1:CDS
TTCTTGTTTATCCATTTGAA+GGG	0.516197	7:+9065579	None:intergenic
TTCCTCTCCACTTTGAACAT+AGG	0.519828	7:+9070067	None:intergenic
AGCACCCTTGGTGGAAGTCA+TGG	0.521686	7:-9069660	MsaT035213.1:CDS
TGGGCACTTATTATGGATGC+TGG	0.523125	7:-9066580	MsaT035213.1:CDS
TCACAGCAACTGCAGCTACA+TGG	0.524987	7:-9064576	MsaT035213.1:CDS
CTAACCTTAACATGTGTGCT+TGG	0.525324	7:+9064472	None:intergenic
AGGTGTTGCTCAAGAGGATG+AGG	0.525431	7:-9071056	MsaT035213.1:CDS
AGCACAAGCAAGCAAGGTAA+AGG	0.526556	7:+9064354	None:intergenic
TCAAATGGATAAACAAGAAG+TGG	0.528244	7:-9065575	MsaT035213.1:CDS
ACGAAACTCAGGAAACTCTT+CGG	0.529891	7:-9064507	MsaT035213.1:CDS
TTCTTTATAGGAATGGATCA+TGG	0.534028	7:-9066420	MsaT035213.1:intron
CGGCCTTCTTATTAGTTGTG+TGG	0.534547	7:-9066620	MsaT035213.1:CDS
ACCTGAACATATCAGGGCGC+TGG	0.539965	7:+9068380	None:intergenic
GGTGGTTTGAGTGCTAATAA+AGG	0.540456	7:-9071076	MsaT035213.1:CDS
AGGAATGGATCATGGAGCAA+TGG	0.542705	7:-9066412	MsaT035213.1:CDS
TAATAAAGGTGTTGCTCAAG+AGG	0.543294	7:-9071062	MsaT035213.1:CDS
TACTAATGGGAGCTCTCTTG+TGG	0.544290	7:-9066354	MsaT035213.1:CDS
TTCATAAAGGCCGGTTACCA+TGG	0.544662	7:-9068192	MsaT035213.1:CDS
ATGCAGGTTATGGACATGCT+TGG	0.546212	7:-9069503	MsaT035213.1:intron
GACCCAAAGGTTCAAGTAGG+AGG	0.548405	7:-9070094	MsaT035213.1:intron
TTTGAACATAGAAACAGTAA+AGG	0.551586	7:-9069857	MsaT035213.1:CDS
TGGGATGTTTGGAATACCAC+AGG	0.555511	7:-9069470	MsaT035213.1:CDS
AAGCCACACAACTAATAAGA+AGG	0.555747	7:+9066617	None:intergenic
AAGACCTGCTGACGAAACTC+AGG	0.556055	7:-9064518	MsaT035213.1:CDS
TCTTGGAGAAGATGCACTCA+AGG	0.557515	7:-9068729	MsaT035213.1:CDS
CACAGCAACTGCAGCTACAT+GGG	0.559415	7:-9064575	MsaT035213.1:CDS
GAGAGGAAACTTGGCAAAGG+TGG	0.562906	7:-9070052	MsaT035213.1:CDS
GTTCATTATAGATATGTGCA+TGG	0.563871	7:-9068614	MsaT035213.1:intron
ACATGCTTGGTCCAAGCTTG+TGG	0.566277	7:-9069490	MsaT035213.1:CDS
ATTAAGACGGTCATTACCAC+CGG	0.568388	7:+9069997	None:intergenic
TTGTACACTTGCCACTCGTA+AGG	0.569716	7:+9069818	None:intergenic
GGATTCCCTCACTAGGGTAG+AGG	0.571629	7:+9064626	None:intergenic
AATGACCGTCTTAATGGCCC+CGG	0.574417	7:-9069989	MsaT035213.1:CDS
TACACTTGCCACTCGTAAGG+AGG	0.576490	7:+9069821	None:intergenic
ATAAACAAGAAGTGGAGAGA+AGG	0.576509	7:-9065567	MsaT035213.1:CDS
TTTGACCCAAAGGTTCAAGT+AGG	0.576801	7:-9070097	MsaT035213.1:intron
TGTTTGGAATACCACAGGCC+AGG	0.580670	7:-9069465	MsaT035213.1:CDS
AACTCAAGGAAATGTCTGAA+AGG	0.580963	7:+9067985	None:intergenic
GTTGGGGTGTTGTTATGTCA+CGG	0.581602	7:-9065509	MsaT035213.1:CDS
TCATGTTCACTACAAACTCA+AGG	0.582669	7:+9067971	None:intergenic
GTGTTCATGCTCATTTGGGA+AGG	0.584104	7:-9068267	MsaT035213.1:CDS
GCCCATAGCACAAGCAAGCA+AGG	0.584968	7:+9064348	None:intergenic
GGGGTGATGGGTGATGAAAG+TGG	0.587284	7:-9071097	None:intergenic
TAATGGCCCCGGTGCCACTG+AGG	0.587700	7:-9069978	MsaT035213.1:intron
TATCATTACAATGTAGCGGA+TGG	0.588065	7:-9066679	MsaT035213.1:CDS
TGGCACCGGGGCCATTAAGA+CGG	0.592504	7:+9069984	None:intergenic
CAAGAATGCCAATGAAGCAA+AGG	0.595613	7:-9067619	MsaT035213.1:intron
GGAAATGTCTGAAAGGAGTA+GGG	0.595669	7:+9067992	None:intergenic
TGATTTCCTCTACCCTAGTG+AGG	0.596385	7:-9064632	MsaT035213.1:CDS
CTTGGAGAAGATGCACTCAA+GGG	0.598220	7:-9068728	MsaT035213.1:CDS
GATTTCCTCTACCCTAGTGA+GGG	0.598868	7:-9064631	MsaT035213.1:CDS
CTGCGGCCAATTAATACTGA+AGG	0.599700	7:-9067877	MsaT035213.1:CDS
AAGTGGAGAGACACCTCCAC+TGG	0.602028	7:-9068421	MsaT035213.1:CDS
AAAGAAACCTGAACATATCA+GGG	0.602522	7:+9068374	None:intergenic
GTCTATGGATTCCCTCACTA+GGG	0.605702	7:+9064620	None:intergenic
TACCAGGTCGGGCAAAAGAG+AGG	0.609022	7:-9067734	MsaT035213.1:intron
TGAGGGAATCCATAGACGAT+GGG	0.610527	7:-9064614	MsaT035213.1:CDS
TCTTGTTTATCCATTTGAAG+GGG	0.615159	7:+9065580	None:intergenic
CGCCTATGTTCAAAGTGGAG+AGG	0.617102	7:-9070069	MsaT035213.1:CDS
TATTCCATGACTTCCACCAA+GGG	0.620145	7:+9069656	None:intergenic
GTGAGGGAATCCATAGACGA+TGG	0.620456	7:-9064615	MsaT035213.1:CDS
ACCCCAACGACTTCCAGCAG+TGG	0.622356	7:+9065524	None:intergenic
TTATACTCACGCCTGGCCTG+TGG	0.625190	7:+9069454	None:intergenic
TTCAACATGCTGACCAGTGG+AGG	0.626398	7:+9068408	None:intergenic
TTACATTACTTCTATAGCTG+GGG	0.629898	7:-9066378	MsaT035213.1:CDS
ATATTCAACATGCTGACCAG+TGG	0.633992	7:+9068405	None:intergenic
ACATACCCTCTCAGGAAAAG+GGG	0.634258	7:+9071024	None:intergenic
AGCACCTGATAACCTTGCCA+TGG	0.635229	7:+9068175	None:intergenic
TTGGAGAAGATGCACTCAAG+GGG	0.638893	7:-9068727	MsaT035213.1:CDS
AAAGGCCGGTTACCATGGCA+AGG	0.640441	7:-9068187	MsaT035213.1:CDS
ACAAGGAGAATATTACGTGA+TGG	0.641400	7:-9069610	MsaT035213.1:intron
ACACTTGCCACTCGTAAGGA+GGG	0.643172	7:+9069822	None:intergenic
GTAGAGCGAGGGATTGCAGA+CGG	0.643300	7:-9066640	MsaT035213.1:CDS
CTCTTATATTAAGCAAACCA+AGG	0.643646	7:-9064543	MsaT035213.1:CDS
GCCACTGCTGGAAGTCGTTG+GGG	0.646395	7:-9065525	MsaT035213.1:CDS
TTAGCGCAGCATGTAGAGCG+AGG	0.648996	7:-9066652	MsaT035213.1:CDS
TCCAAGCACACTATCAAACA+AGG	0.651722	7:+9067912	None:intergenic
GTGGAGAGGAAACTTGGCAA+AGG	0.654106	7:-9070055	MsaT035213.1:CDS
TAGCGCAGCATGTAGAGCGA+GGG	0.654538	7:-9066651	MsaT035213.1:CDS
TAGGATGTCTGCCGAAATGG+TGG	0.657696	7:-9068779	MsaT035213.1:CDS
GTACATTATAAAGGAAGACA+AGG	0.658821	7:-9069627	MsaT035213.1:CDS
GTTGGTCGTCGAGTAACCGG+TGG	0.658919	7:-9070013	MsaT035213.1:CDS
GGTGTTGCTCAAGAGGATGA+GGG	0.659331	7:-9071055	MsaT035213.1:CDS
TAGGTATCATTACAATGTAG+CGG	0.659418	7:-9066683	MsaT035213.1:CDS
AATGGTGGCATGCATTGCTG+TGG	0.668208	7:-9068764	MsaT035213.1:CDS
GTATTCCATGACTTCCACCA+AGG	0.671722	7:+9069655	None:intergenic
AGGTTCGCCTATGTTCAAAG+TGG	0.676871	7:-9070074	MsaT035213.1:CDS
ACTATGGCCCTCCTTACGAG+TGG	0.689741	7:-9069829	MsaT035213.1:CDS
AGCATACCTCAGTGGCACCG+GGG	0.709149	7:+9069972	None:intergenic
TGGAGAAGATGCACTCAAGG+GGG	0.711646	7:-9068726	MsaT035213.1:intron
TCATTATAGATATGTGCATG+GGG	0.716228	7:-9068612	MsaT035213.1:intron
CAACCCTCAGCATACCTCAG+TGG	0.734914	7:+9069964	None:intergenic
GTGATGGGTGATGAAAGTGG+TGG	0.743174	7:-9071094	MsaT035213.1:CDS
TTGGACCAAATCCTGCACTG+CGG	0.818000	7:-9067894	MsaT035213.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	9064334	9071113	9064334	ID=MsaG035213
Chr7	mRNA	9064334	9071113	9064334	ID=MsaT035213.1;Parent=MsaG035213
Chr7	exon	9064334	9064393	9064334	ID=MsaT035213.1.exon16;Parent=MsaT035213.1
Chr7	CDS	9064334	9064393	9064334	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9064477	9064665	9064477	ID=MsaT035213.1.exon15;Parent=MsaT035213.1
Chr7	CDS	9064477	9064665	9064477	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9065488	9065645	9065488	ID=MsaT035213.1.exon14;Parent=MsaT035213.1
Chr7	CDS	9065488	9065645	9065488	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9066342	9066432	9066342	ID=MsaT035213.1.exon13;Parent=MsaT035213.1
Chr7	CDS	9066342	9066432	9066342	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9066528	9066702	9066528	ID=MsaT035213.1.exon12;Parent=MsaT035213.1
Chr7	CDS	9066528	9066702	9066528	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9067620	9067750	9067620	ID=MsaT035213.1.exon11;Parent=MsaT035213.1
Chr7	CDS	9067620	9067750	9067620	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9067867	9068085	9067867	ID=MsaT035213.1.exon10;Parent=MsaT035213.1
Chr7	CDS	9067867	9068085	9067867	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9068180	9068309	9068180	ID=MsaT035213.1.exon9;Parent=MsaT035213.1
Chr7	CDS	9068180	9068309	9068180	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9068382	9068448	9068382	ID=MsaT035213.1.exon8;Parent=MsaT035213.1
Chr7	CDS	9068382	9068448	9068382	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9068531	9068625	9068531	ID=MsaT035213.1.exon7;Parent=MsaT035213.1
Chr7	CDS	9068531	9068625	9068531	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9068727	9068798	9068727	ID=MsaT035213.1.exon6;Parent=MsaT035213.1
Chr7	CDS	9068727	9068798	9068727	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9069464	9069519	9069464	ID=MsaT035213.1.exon5;Parent=MsaT035213.1
Chr7	CDS	9069464	9069519	9069464	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9069611	9069680	9069611	ID=MsaT035213.1.exon4;Parent=MsaT035213.1
Chr7	CDS	9069611	9069680	9069611	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9069818	9069891	9069818	ID=MsaT035213.1.exon3;Parent=MsaT035213.1
Chr7	CDS	9069818	9069891	9069818	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9069979	9070107	9069979	ID=MsaT035213.1.exon2;Parent=MsaT035213.1
Chr7	CDS	9069979	9070107	9069979	ID=cds.MsaT035213.1;Parent=MsaT035213.1
Chr7	exon	9071030	9071113	9071030	ID=MsaT035213.1.exon1;Parent=MsaT035213.1
Chr7	CDS	9071030	9071113	9071030	ID=cds.MsaT035213.1;Parent=MsaT035213.1

Gene Sequence

>MsaT035213.1

ATGGGTGATGAAAGTGGTGGTTTGAGTGCTAATAAAGGTGTTGCTCAAGAGGATGAGGGCAATACTACCCCTTTTCCTGAGAGGGTTCAAGTAGGAGGTTCGCCTATGTTCAAAGTGGAGAGGAAACTTGGCAAAGGTGGATTTGGACAGGTTTTTGTTGGTCGTCGAGTAACCGGTGGTAATGACCGTCTTAATGGCCCCGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGTTGCAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAACACCCTTGGTGGAAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAAGGAGAATATTACGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATACCACAGGCCAGGCGATGTCTGCCGAAATGGTGGCATGCATTGCTGTGGAGTCATTGTCGATCTTGGAGAAGATGCACTCAAGGGGATATGTGCATGGGGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCAGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGATCTCGGATTAGCAACAAAGTGGAGAGACACCTCCACTGGTCAGCATGTTGAATATGACCAGCGCCCTGATATGTTCAGAGGAACTGTTCGATATGCAAGTGTTCATGCTCATTTGGGAAGGACTGCTAGCAGAAGAGATGATCTTGAATCTCTTGCATATACTCTCATTTTTCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGAGATAATAAGTCGTATCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTACTCCTTTCAGACATTTCCTTGAGTTTGTAGTGAACATGAAATTCGATGAAGAGCCTAACTATTCCAAGCTAATATCCTTGTTTGATAGTGTGCTTGGACCAAATCCTGCACTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTCGGGCAAAAGAGAGGTAGATTGAATATTGAGGAAGAAGATGATTCGCAGCCTAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGGACGATTAGCGCAGCATGTAGAGCGAGGGATTGCAGACGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAATGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGTTACTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGCGAGTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGGAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTCCTCTACCCTAGTGAGGGAATCCATAGACGATGGGATAATGGTTACAGGATCACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCAAGGCGAAGACCTGCTGACGAAACTCAGGAAACTCTTCGGACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGCTTGTGCTATGGGCGTACAGTATGTTGA

Protein sequence

>MsaT035213.1

MGDESGGLSANKGVAQEDEGNTTPFPERVQVGGSPMFKVERKLGKGGFGQVFVGRRVTGGNDRLNGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNTTGQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSTGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPTPFRHFLEFVVNMKFDEEPNYSKLISLFDSVLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADGRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC*