AlfalfaGEDB | MsaG035269

M. sativa ssp. caerulea / MsaG035269

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035269	RHN44270.1	89.733	487	48	2	1	486	98	583	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035269	sp\|Q93ZL5\|CDF2_ARATH	41.973	517	202	21	6	486	3	457	1.04e-92	292

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035269	tr\|A0A396GT85\|A0A396GT85_MEDTR	89.733	487	48	2	1	486	98	583	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
MsaG035269	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000081	MsaG035269	0.836136	2.041084e-56	7.073827e-54
MsaG000234	MsaG035269	0.939232	5.241630e-99	4.605411e-94
MsaG000364	MsaG035269	0.873141	3.804618e-67	5.043913e-64
MsaG000379	MsaG035269	0.900491	1.601515e-77	8.433937e-74
MsaG000413	MsaG035269	0.833324	1.032466e-55	3.290351e-53
MsaG000520	MsaG035269	0.898890	7.788996e-77	3.734243e-73
MsaG000694	MsaG035269	0.851555	1.572155e-60	8.989982e-58
MsaG000801	MsaG035269	0.815439	1.599677e-51	3.126903e-49
MsaG000999	MsaG035269	0.854999	1.635803e-61	1.056736e-58
MsaG001281	MsaG035269	0.883857	6.742086e-71	1.461070e-67

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035269	MtrunA17_Chr7g0217581	89.733	487	48	2	1	486	98	583	0.0	885
MsaG035269	MtrunA17_Chr6g0453321	57.114	499	197	9	1	486	1	495	6.96e-178	508
MsaG035269	MtrunA17_Chr4g0042481	44.177	498	229	14	1	484	1	463	1.97e-116	350
MsaG035269	MtrunA17_Chr3g0092111	41.683	523	210	20	1	486	1	465	8.78e-97	300
MsaG035269	MtrunA17_Chr5g0417601	37.298	496	178	16	4	484	2	379	3.65e-67	220
MsaG035269	MtrunA17_Chr5g0417561	34.969	489	181	19	4	484	2	361	3.81e-65	214
MsaG035269	MtrunA17_Chr8g0355261	34.263	502	239	21	3	485	9	438	5.61e-65	216
MsaG035269	MtrunA17_Chr5g0417551	34.608	497	180	21	4	484	2	369	1.32e-60	202
MsaG035269	MtrunA17_Chr7g0254161	35.198	429	203	13	78	485	49	423	1.41e-55	191
MsaG035269	MtrunA17_Chr6g0460731	37.979	287	104	9	2	262	7	245	2.03e-45	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035269	AT5G39660.3	41.973	517	202	21	6	486	3	457	1.06e-93	292
MsaG035269	AT5G39660.1	41.973	517	202	21	6	486	3	457	1.06e-93	292
MsaG035269	AT5G39660.2	41.973	517	202	21	6	486	3	457	1.06e-93	292
MsaG035269	AT3G47500.1	42.626	495	223	23	1	484	2	446	5.66e-89	279
MsaG035269	AT5G62430.1	38.402	388	116	16	108	484	21	296	8.78e-59	196
MsaG035269	AT1G69570.1	33.069	505	209	21	1	485	1	396	6.91e-53	184
MsaG035269	AT1G26790.1	32.067	421	151	18	91	485	60	371	2.20e-40	149
MsaG035269	AT1G29160.1	85.000	60	9	0	130	189	56	115	8.33e-35	128
MsaG035269	AT2G34140.1	81.667	60	11	0	130	189	52	111	5.99e-33	123
MsaG035269	AT5G60200.1	66.129	62	21	0	132	193	51	112	8.15e-25	103

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Find 116 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCCAAGGAGTTCCATG+AGG	0.739950	7:+9904290	None:intergenic
AACATGCTAAAATCAAGCGA+AGG	0.639475	7:-9904053	MsaT035269.1:CDS
AACCTTAGGTAAACATTCAA+GGG	0.580141	7:-9904081	MsaT035269.1:CDS
AACGGTACAATCCTTACATT+TGG	0.421611	7:-9904575	MsaT035269.1:CDS
AATCCTGATGGACAAAAGGC+CGG	0.603585	7:+9904227	None:intergenic
AATGCCTGAAAGAGTCTTCT+CGG	0.474960	7:+9903891	None:intergenic
AATGGCATGGAAAATCCTGA+TGG	0.590674	7:+9904215	None:intergenic
ACAAGAACATGAGATTGAGA+AGG	0.637128	7:-9906365	MsaT035269.1:intron
ACCATGAGAAACGTACCGGT+AGG	0.711808	7:-9904701	MsaT035269.1:CDS
ACCTACCGGTACGTTTCTCA+TGG	0.545443	7:+9904700	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	9903785	9906545	9903785	ID=MsaG035269
Chr7	mRNA	9903785	9906545	9903785	ID=MsaT035269.1;Parent=MsaG035269
Chr7	exon	9903785	9905065	9903785	ID=MsaT035269.1.exon2;Parent=MsaT035269.1
Chr7	CDS	9903785	9905065	9903785	ID=cds.MsaT035269.1;Parent=MsaT035269.1
Chr7	exon	9906366	9906545	9906366	ID=MsaT035269.1.exon1;Parent=MsaT035269.1
Chr7	CDS	9906366	9906545	9906366	ID=cds.MsaT035269.1;Parent=MsaT035269.1

Gene Sequence

>MsaT035269.1

ATGTTGGAGACAAAAGACTCTGCGATCAAACTGTTTGGAAAAACAATTCCTATTTCAGAAATTCATGTTGGAAAAACAATTTCAGCGAGTATTGATGATCATCATCATGATTTTTCTACAAACTCTTCAAATGAGTCTCATAATAATAAAGATGCTTCACAAGAACATGAGATTGAGAAGAACAAAACGGGAGAAAAACTGTCGAATAAAAAGAACGAAGATGGATTCCTTGCACAATCAACAGAAGAATTCACTAATCCAGATGCAACTTCTAGAACTGATGAAGAATCTGTTACAGTATCCACCGAAAGGGAGGTTGCTACATTGAAAACTTCAAAGACCGAAGAAGAACAGGACGAGACAAGTAACACACAGGATAAGCACCTCAAAAAACCGGACAAAATAGTTCCTTGTCCTCGTTGTAGTAGCATGGACACGAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGGACTGCCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCGGTAGGTGCCGGTCGCAGAAAAAACAAGAGCTCTTCTTCTCACTATCGCCAGATTACTGTCTCAGAAGCGACACTTCAGAATTCTCAGATACACCCTCCCTTGAAATGCAACGGTACAATCCTTACATTTGGATCCAACTCACCTTTATGTGATTCAGTGGCATCTGTTTTGAAACTTGCTGATAAAACAGTGCAAAATTACACAAGAAATGGATATCATAAACATGAAGAACTAAGAATTTGTGTTCCTCATACCAGTGAAGAACAAGGGGAGGATCAATCAAATAAATCGTCGGTTACCTCCACAAAGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGTGGAATGGCCATAGCTTCCCACCACAAGGTGGCTACTTTCCTCATGGAACTCCTTGGCATTTACCATGGAATCCGATGCAAACGAGCTCACTGATTCCACCACCGGCCTTTTGTCCATCAGGATTTTCCATGCCATTCTATCCTGCAACTTATTGGGGTTGTACTATGCCAAGTGCATGGAACATTCCACGGCAAGCACAACCATCATCACCGAATGGTGCAAACCATAACTCTACTACAAACTCTCCAACCTTAGGTAAACATTCAAGGGAGGAAAACATGCTAAAATCAAGCGAAGGAGATGGTAAGAAAGAAATTAGCGAAGAAAAGAGTTTGTGGTTTCCTAAAACTTTGAGGATTGATGACTCTGAGGAAGCAGAAAAAAGCTCTTTCTGGACAACACTTGGGATTAAAAACAACAACGCCGACTCAGTTCCTCCGAGAAGACTCTTTCAGGCATTCCCTTCAAAGTGTGACGAGAAAAATCACTCGGTACAATTGTCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCTTCACTTTCATGAGACTTCGTAA

Protein sequence

>MsaT035269.1

MLETKDSAIKLFGKTIPISEIHVGKTISASIDDHHHDFSTNSSNESHNNKDASQEHEIEKNKTGEKLSNKKNEDGFLAQSTEEFTNPDATSRTDEESVTVSTEREVATLKTSKTEEEQDETSNTQDKHLKKPDKIVPCPRCSSMDTKFCYYNNYNVNQPRHFCKDCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEATLQNSQIHPPLKCNGTILTFGSNSPLCDSVASVLKLADKTVQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNGHSFPPQGGYFPHGTPWHLPWNPMQTSSLIPPPAFCPSGFSMPFYPATYWGCTMPSAWNIPRQAQPSSPNGANHNSTTNSPTLGKHSREENMLKSSEGDGKKEISEEKSLWFPKTLRIDDSEEAEKSSFWTTLGIKNNNADSVPPRRLFQAFPSKCDEKNHSVQLSSVLQANPAALSRSLHFHETS*