AlfalfaGEDB | MsaG035290

M. sativa ssp. caerulea / MsaG035290

KEGG: K14491
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	AES78253.1	89.444	540	57	0	4	543	14	553	0.0	938

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	sp\|Q9ZWJ9\|ARR2_ARATH	36.400	250	129	5	1	226	48	291	5.14e-40	160

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	tr\|G7L033\|G7L033_MEDTR	89.444	540	57	0	4	543	14	553	0.0	938

TFs/TRs:

Gene ID	Type	Classification
MsaG035290	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004159	MsaG035290	0.801711	1.327670e-48	1.865855e-46
MsaG004431	MsaG035290	0.807223	9.534592e-50	1.522963e-47
MsaG008114	MsaG035290	0.816062	1.164167e-51	2.311735e-49
MsaG008592	MsaG035290	0.814838	2.172799e-51	4.183039e-49
MsaG012203	MsaG035290	0.817122	6.754311e-52	1.378284e-49
MsaG012204	MsaG035290	0.816935	7.435014e-52	1.509894e-49
MsaG045536	MsaG035290	0.802156	1.076452e-48	1.528200e-46
MsaG046554	MsaG035290	0.801248	1.649710e-48	2.294191e-46
MsaG006602	MsaG035290	0.845515	7.267168e-59	3.386775e-56
MsaG019705	MsaG035290	0.801763	1.295370e-48	1.822630e-46
MsaG033462	MsaG035290	0.815261	1.752315e-51	3.409855e-49
MsaG033838	MsaG035290	0.810505	1.908300e-50	3.299187e-48
MsaG031513	MsaG035290	0.809677	2.871792e-50	4.866028e-48
MsaG031850	MsaG035290	0.809131	3.755315e-50	6.280093e-48
MsaG031628	MsaG035290	0.813910	3.475837e-51	6.537656e-49
MsaG033283	MsaG035290	0.805056	2.711598e-49	4.116372e-47
MsaG036457	MsaG035290	0.811882	9.625153e-51	1.721138e-48
MsaG035290	MsaG044907	0.824651	1.274205e-53	3.174760e-51
MsaG013321	MsaG035290	0.821017	8.865056e-53	2.003009e-50
MsaG014215	MsaG035290	0.821645	6.358665e-53	1.460768e-50
MsaG015184	MsaG035290	0.805041	2.731597e-49	4.145289e-47
MsaG018417	MsaG035290	0.819062	2.471019e-52	5.302163e-50
MsaG028609	MsaG035290	0.819567	1.898702e-52	4.128162e-50
MsaG028634	MsaG035290	0.800583	2.252752e-48	3.086226e-46
MsaG029309	MsaG035290	0.828095	1.944362e-54	5.331244e-52
MsaG035987	MsaG035290	0.810331	2.079569e-50	3.580148e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	MtrunA17_Chr7g0223971	83.205	518	54	1	59	543	1	518	0.0	814
MsaG035290	MtrunA17_Chr7g0223991	75.587	213	32	3	214	424	24	218	2.12e-97	303
MsaG035290	MtrunA17_Chr6g0473731	45.370	432	166	12	57	471	10	388	1.02e-95	306
MsaG035290	MtrunA17_Chr7g0215541	59.023	266	85	6	549	809	92	338	9.37e-77	253
MsaG035290	MtrunA17_Chr3g0132631	54.018	224	99	2	585	808	147	366	1.01e-63	218
MsaG035290	MtrunA17_Chr7g0227241	51.240	242	112	3	569	809	24	260	6.37e-63	213
MsaG035290	MtrunA17_Chr2g0277281	47.761	268	126	5	545	809	138	394	1.26e-61	213
MsaG035290	MtrunA17_Chr2g0278091	48.718	234	109	4	587	809	135	368	2.89e-59	206
MsaG035290	MtrunA17_Chr2g0278791	45.353	269	119	6	549	809	117	365	7.84e-56	197
MsaG035290	MtrunA17_Chr1g0207991	44.488	254	126	6	563	809	20	265	3.24e-52	183
MsaG035290	MtrunA17_Chr6g0461431	52.451	204	80	7	609	809	2	191	1.13e-50	177
MsaG035290	MtrunA17_Chr5g0438051	46.352	233	103	6	588	809	175	396	2.21e-48	176
MsaG035290	MtrunA17_Chr7g0246351	46.903	226	104	5	587	809	176	388	2.69e-48	176
MsaG035290	MtrunA17_Chr2g0294911	39.810	211	115	4	5	203	57	267	5.14e-39	154
MsaG035290	MtrunA17_Chr1g0161431	33.878	245	137	5	5	225	39	282	2.84e-38	152
MsaG035290	MtrunA17_Chr4g0067981	36.150	213	122	2	5	203	59	271	4.20e-38	152
MsaG035290	MtrunA17_Chr2g0278121	38.790	281	136	11	549	809	150	414	3.14e-37	145
MsaG035290	MtrunA17_Chr1g0149841	36.000	225	114	3	4	205	32	249	3.17e-37	146
MsaG035290	MtrunA17_Chr8g0376881	34.894	235	135	5	5	221	53	287	6.45e-37	146
MsaG035290	MtrunA17_Chr3g0123131	33.460	263	147	6	5	242	41	300	1.26e-36	146
MsaG035290	MtrunA17_Chr3g0137101	37.500	224	116	4	4	205	35	256	7.24e-36	144
MsaG035290	MtrunA17_Chr7g0275401	37.156	218	118	3	4	203	32	248	1.46e-35	136
MsaG035290	MtrunA17_Chr4g0009851	31.419	296	172	8	5	291	39	312	9.93e-35	135
MsaG035290	MtrunA17_Chr4g0009981	29.391	279	167	6	22	291	2	259	1.14e-34	133
MsaG035290	MtrunA17_Chr4g0009901	35.784	204	111	3	4	203	37	224	7.76e-34	131
MsaG035290	MtrunA17_Chr6g0471041	35.238	210	122	3	1	209	38	234	1.06e-33	134
MsaG035290	MtrunA17_Chr7g0275891	32.520	246	128	6	4	218	32	270	2.03e-33	132
MsaG035290	MtrunA17_Chr2g0304841	32.917	240	130	4	4	214	45	282	2.45e-32	134
MsaG035290	MtrunA17_Chr2g0277901	39.655	232	75	6	587	809	72	247	6.49e-32	125
MsaG035290	MtrunA17_Chr3g0134481	33.333	195	84	2	4	198	35	183	1.51e-31	122
MsaG035290	MtrunA17_Chr7g0246331	35.178	253	124	10	587	809	177	419	4.02e-31	127
MsaG035290	MtrunA17_Chr4g0074411	32.589	224	138	2	1	211	42	265	4.20e-31	129
MsaG035290	MtrunA17_Chr3g0134461	34.536	194	90	2	4	196	35	192	6.64e-30	117
MsaG035290	MtrunA17_Chr1g0149851	33.193	238	114	4	4	203	32	262	2.58e-29	123
MsaG035290	MtrunA17_Chr4g0074401	31.441	229	141	3	1	213	41	269	7.95e-29	122
MsaG035290	MtrunA17_Chr3g0137721	36.145	249	121	8	585	809	158	392	2.39e-28	118
MsaG035290	MtrunA17_Chr3g0137701	38.528	231	115	8	587	807	170	383	8.04e-27	114
MsaG035290	MtrunA17_Chr7g0215331	38.362	232	121	8	588	811	106	323	1.02e-26	112
MsaG035290	MtrunA17_Chr4g0074421	35.638	188	108	3	26	201	1	187	1.53e-26	107
MsaG035290	MtrunA17_Chr3g0137681	36.364	242	131	8	573	807	150	375	4.54e-25	108
MsaG035290	MtrunA17_Chr1g0149831	34.359	195	87	5	34	205	7	183	4.35e-24	101
MsaG035290	MtrunA17_Chr3g0114151	33.333	249	129	10	559	787	145	376	6.18e-23	102
MsaG035290	MtrunA17_Chr7g0235821	32.365	241	128	10	582	809	150	368	4.57e-22	99.4
MsaG035290	MtrunA17_Chr6g0471031	33.745	243	122	9	587	807	213	438	8.02e-22	99.4
MsaG035290	MtrunA17_Chr3g0087391	33.878	245	123	10	584	809	165	389	1.89e-21	97.8
MsaG035290	MtrunA17_Chr6g0465731	33.610	241	117	10	587	807	156	373	7.90e-21	95.5
MsaG035290	MtrunA17_Chr5g0431711	35.124	242	112	10	587	811	163	376	8.82e-21	95.5
MsaG035290	MtrunA17_Chr7g0235851	31.667	240	131	9	582	809	150	368	5.74e-20	92.8
MsaG035290	MtrunA17_Chr4g0009991	37.121	132	61	3	70	196	2	116	1.13e-19	85.5
MsaG035290	MtrunA17_Chr7g0251931	31.111	225	98	6	587	809	22	191	1.64e-19	87.8
MsaG035290	MtrunA17_Chr3g0107721	33.480	227	120	7	587	787	166	387	4.25e-19	90.9
MsaG035290	MtrunA17_Chr7g0262121	35.401	274	121	12	563	809	143	387	4.48e-19	90.5
MsaG035290	MtrunA17_Chr3g0139601	36.066	244	114	11	587	809	248	470	6.13e-19	90.9
MsaG035290	MtrunA17_Chr5g0423901	30.400	250	130	11	578	807	151	376	1.33e-18	89.0
MsaG035290	MtrunA17_Chr4g0031961	42.857	112	48	4	124	225	101	206	1.96e-18	87.0
MsaG035290	MtrunA17_Chr5g0422791	35.176	199	90	10	605	787	2	177	8.06e-18	82.4
MsaG035290	MtrunA17_Chr7g0255711	49.296	71	36	0	136	206	80	150	8.96e-18	85.1
MsaG035290	MtrunA17_Chr5g0431691	31.754	211	115	8	587	787	156	347	8.98e-18	86.3
MsaG035290	MtrunA17_Chr5g0419431	33.333	216	113	6	587	789	163	360	9.77e-18	86.3
MsaG035290	MtrunA17_Chr7g0235841	37.195	164	78	8	659	811	1	150	1.53e-17	80.9
MsaG035290	MtrunA17_Chr7g0236141	29.004	231	108	7	588	811	38	219	2.16e-17	82.0
MsaG035290	MtrunA17_Chr7g0236091	29.004	231	108	7	588	811	38	219	2.16e-17	82.0
MsaG035290	MtrunA17_Chr7g0236181	29.004	231	108	7	588	811	38	219	2.16e-17	82.0
MsaG035290	MtrunA17_Chr4g0011071	28.477	151	89	3	27	173	39	174	2.35e-17	80.9
MsaG035290	MtrunA17_Chr6g0465671	31.818	242	118	9	587	807	156	371	3.00e-17	84.7
MsaG035290	MtrunA17_Chr7g0227851	31.092	238	124	8	587	809	163	375	3.14e-17	84.7
MsaG035290	MtrunA17_Chr4g0019511	33.992	253	109	11	587	807	84	310	5.44e-17	83.2
MsaG035290	MtrunA17_Chr6g0466481	31.818	242	118	9	587	807	156	371	5.51e-17	84.0
MsaG035290	MtrunA17_Chr6g0458601	32.917	240	125	9	587	809	213	433	5.88e-17	84.3
MsaG035290	MtrunA17_Chr1g0166251	31.489	235	136	7	588	809	158	380	7.11e-17	83.6
MsaG035290	MtrunA17_Chr2g0278081	64.151	53	19	0	735	787	2	54	9.94e-17	75.5
MsaG035290	MtrunA17_Chr1g0193401	32.937	252	117	12	587	811	328	554	1.08e-16	84.3
MsaG035290	MtrunA17_Chr3g0086041	28.963	328	177	16	507	811	94	388	1.56e-16	82.8
MsaG035290	MtrunA17_Chr7g0224001	33.750	240	117	11	587	807	171	387	2.66e-16	82.0
MsaG035290	MtrunA17_Chr2g0278101	35.928	167	83	4	524	668	96	260	2.77e-16	80.9
MsaG035290	MtrunA17_Chr4g0023261	30.435	207	93	6	609	809	3	164	2.83e-16	77.4
MsaG035290	MtrunA17_Chr7g0215531	51.220	82	33	1	531	612	90	164	3.30e-16	77.0
MsaG035290	MtrunA17_Chr2g0278161	33.735	166	80	5	658	809	9	158	4.44e-16	76.6
MsaG035290	MtrunA17_Chr3g0091171	31.760	233	120	9	587	808	155	359	6.41e-16	80.5
MsaG035290	MtrunA17_Chr8g0391911	28.326	233	129	7	5	211	37	257	7.74e-16	78.6
MsaG035290	MtrunA17_Chr5g0423851	31.799	239	119	10	587	807	155	367	8.13e-16	80.1
MsaG035290	MtrunA17_Chr3g0138571	30.242	248	126	11	587	809	156	381	9.35e-16	80.1
MsaG035290	MtrunA17_Chr7g0227631	29.915	234	133	10	585	807	88	301	1.08e-15	79.0
MsaG035290	MtrunA17_Chr7g0236211	31.048	248	118	10	588	809	163	383	1.40e-15	79.7
MsaG035290	MtrunA17_Chr3g0138371	30.909	220	121	7	584	789	156	358	1.55e-15	79.7
MsaG035290	MtrunA17_Chr2g0278801	39.695	131	66	3	549	672	121	245	4.34e-15	75.9
MsaG035290	MtrunA17_Chr6g0458501	30.660	212	121	7	587	787	179	375	8.52e-15	77.4
MsaG035290	MtrunA17_Chr2g0324891	44.444	90	49	1	110	199	125	213	8.60e-15	77.4
MsaG035290	MtrunA17_Chr7g0262091	31.939	263	145	8	563	809	141	385	1.21e-14	76.6
MsaG035290	MtrunA17_Chr7g0227651	28.689	244	123	10	585	807	162	375	1.28e-14	76.6
MsaG035290	MtrunA17_Chr4g0040481	59.649	57	23	0	143	199	154	210	1.92e-14	76.6
MsaG035290	MtrunA17_Chr2g0278221	37.037	135	74	3	675	809	22	145	2.86e-14	71.6
MsaG035290	MtrunA17_Chr5g0395311	29.032	248	135	9	587	811	175	404	3.45e-14	75.9
MsaG035290	MtrunA17_Chr2g0297931	29.218	243	143	8	587	811	165	396	3.87e-14	75.5
MsaG035290	MtrunA17_Chr7g0227781	39.216	153	63	8	678	816	20	156	4.11e-14	70.9
MsaG035290	MtrunA17_Chr5g0431681	29.762	252	136	9	587	812	130	366	5.85e-14	74.3
MsaG035290	MtrunA17_Chr7g0262081	32.911	237	127	9	587	809	177	395	6.71e-14	74.7
MsaG035290	MtrunA17_Chr1g0181601	29.918	244	128	10	587	807	156	379	8.17e-14	74.3
MsaG035290	MtrunA17_Chr5g0400241	53.333	60	28	0	146	205	310	369	1.70e-13	73.9
MsaG035290	MtrunA17_Chr4g0054981	51.667	60	29	0	146	205	309	368	2.23e-13	73.9
MsaG035290	MtrunA17_Chr8g0383961	27.723	202	103	6	5	203	42	203	5.86e-13	70.1
MsaG035290	MtrunA17_Chr7g0235431	31.944	216	110	7	587	787	148	341	2.33e-12	69.7
MsaG035290	MtrunA17_Chr3g0124051	31.148	244	125	10	587	809	69	290	3.24e-12	68.2
MsaG035290	MtrunA17_Chr7g0227831	35.897	117	53	5	697	809	17	115	3.49e-12	64.3
MsaG035290	MtrunA17_Chr7g0236111	35.593	118	59	3	697	809	18	123	6.59e-12	63.5
MsaG035290	MtrunA17_Chr5g0419701	27.559	254	136	9	587	811	151	385	7.75e-12	68.2
MsaG035290	MtrunA17_Chr7g0273871	29.717	212	100	8	587	787	161	334	1.12e-11	67.4
MsaG035290	MtrunA17_Chr6g0469321	62.791	43	16	0	163	205	70	112	2.11e-11	63.5
MsaG035290	MtrunA17_Chr6g0465651	34.307	137	79	3	587	715	13	146	2.59e-11	62.4
MsaG035290	MtrunA17_Chr5g0396411	27.969	261	143	9	585	809	140	391	2.84e-11	66.6
MsaG035290	MtrunA17_Chr5g0419561	29.060	234	125	7	587	807	159	364	3.23e-11	66.2
MsaG035290	MtrunA17_Chr4g0041551	29.114	237	124	8	587	801	126	340	4.35e-11	65.5
MsaG035290	MtrunA17_Chr5g0417521	54.545	55	24	1	147	200	15	69	5.77e-11	65.1
MsaG035290	MtrunA17_Chr6g0461641	54.545	55	24	1	147	200	42	96	6.20e-11	65.5
MsaG035290	MtrunA17_Chr3g0137671	35.057	174	93	8	639	806	30	189	6.24e-11	62.8
MsaG035290	MtrunA17_Chr3g0091641	30.081	123	83	1	5	124	48	170	8.88e-11	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	AT3G16857.1	34.733	262	129	5	5	230	61	316	6.48e-40	157
MsaG035290	AT3G16857.2	34.733	262	129	5	5	230	61	316	9.19e-40	157
MsaG035290	AT3G16857.3	35.060	251	121	5	16	230	2	246	8.00e-39	154
MsaG035290	AT5G07210.2	36.260	262	123	7	4	223	39	298	1.78e-37	149
MsaG035290	AT5G07210.1	36.293	259	121	7	7	223	50	306	4.33e-36	145
MsaG035290	AT2G25180.1	36.916	214	123	2	4	205	40	253	4.99e-35	142
MsaG035290	AT4G31920.1	34.091	220	144	1	4	223	40	258	3.33e-34	139
MsaG035290	AT2G01760.1	36.486	222	118	4	5	203	35	256	4.73e-34	135
MsaG035290	AT2G01760.2	36.036	222	119	4	5	203	63	284	1.02e-32	132
MsaG035290	AT5G58080.1	29.907	321	173	9	4	283	41	350	1.49e-31	131
MsaG035290	AT1G67710.1	36.364	220	123	4	5	207	35	254	3.43e-31	129
MsaG035290	AT2G27070.1	33.205	259	129	5	7	223	45	301	1.22e-30	128
MsaG035290	AT3G62670.1	34.615	208	125	5	3	199	61	268	4.26e-27	115
MsaG035290	AT2G01760.3	36.126	191	99	4	36	203	1	191	4.60e-27	113
MsaG035290	AT5G49240.1	30.986	213	124	3	3	196	64	272	2.09e-26	110
MsaG035290	AT1G67710.2	36.559	186	101	4	39	207	4	189	9.18e-25	108
MsaG035290	AT1G49190.1	31.250	224	129	5	3	204	56	276	2.37e-23	103
MsaG035290	AT1G67710.3	36.667	180	93	5	56	214	12	191	1.00e-20	96.7
MsaG035290	AT5G59570.2	38.053	113	59	2	105	206	88	200	3.30e-18	86.7
MsaG035290	AT5G59570.1	38.053	113	59	2	105	206	88	200	3.30e-18	86.7
MsaG035290	AT3G10760.1	47.297	74	39	0	133	206	91	164	6.55e-18	86.3
MsaG035290	AT2G40970.1	50.725	69	34	0	138	206	96	164	1.09e-17	84.0
MsaG035290	AT5G05090.1	49.275	69	35	0	135	203	69	137	1.33e-17	84.3
MsaG035290	AT3G46640.2	49.296	71	34	1	138	206	133	203	3.65e-17	84.0
MsaG035290	AT3G46640.1	49.296	71	34	1	138	206	133	203	3.65e-17	84.0
MsaG035290	AT3G46640.3	49.296	71	34	1	138	206	133	203	5.99e-17	83.6
MsaG035290	AT5G44190.2	62.295	61	21	1	139	199	141	199	4.55e-16	81.3
MsaG035290	AT5G44190.1	62.295	61	21	1	139	199	141	199	4.82e-16	81.6
MsaG035290	AT2G20570.1	38.614	101	62	0	99	199	105	205	1.06e-13	74.7
MsaG035290	AT2G20570.2	60.784	51	20	0	149	199	171	221	7.18e-13	72.0
MsaG035290	AT4G18020.8	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.11	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.4	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.5	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.10	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.7	45.333	75	38	1	147	221	296	367	9.37e-13	72.0
MsaG035290	AT4G18020.3	45.333	75	38	1	147	221	296	367	1.12e-12	72.0
MsaG035290	AT4G18020.2	45.333	75	38	1	147	221	296	367	1.12e-12	72.0
MsaG035290	AT4G18020.1	45.333	75	38	1	147	221	296	367	1.12e-12	72.0
MsaG035290	AT4G18020.6	45.333	75	38	1	147	221	296	367	1.12e-12	72.0
MsaG035290	AT4G18020.9	45.333	75	38	1	147	221	296	367	1.12e-12	72.0
MsaG035290	AT1G49190.2	32.653	98	66	0	3	100	56	153	1.44e-11	68.6
MsaG035290	AT3G04450.3	52.632	57	26	1	144	199	235	291	3.61e-11	65.9
MsaG035290	AT3G04450.1	46.479	71	31	2	144	207	235	305	5.81e-11	66.2
MsaG035290	AT3G04450.4	46.479	71	31	2	144	207	195	265	5.98e-11	65.9
MsaG035290	AT3G04450.2	46.479	71	31	2	144	207	195	265	5.98e-11	65.9
MsaG035290	AT5G29000.4	44.286	70	38	1	144	212	228	297	6.81e-11	64.7

Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCAACTTCCTCTGAATTTC+TGG	0.123486	7:+10288223	None:intergenic
TGGATTCTATTTCTGATATT+AGG	0.142363	7:-10292399	MsaT035290.1:CDS
TTTGAGTGAGGGTAATATTA+TGG	0.147248	7:+10290158	None:intergenic
AGGCAAGATGGAACAGATTT+TGG	0.160737	7:+10289532	None:intergenic
AGAAGATACAAGGCAAAATT+TGG	0.162283	7:-10289612	MsaT035290.1:CDS
CTGAAGACTTCAAAGATATT+TGG	0.172247	7:-10293832	MsaT035290.1:CDS
GTAAGAAACAATAACCATTT+TGG	0.206140	7:-10292598	MsaT035290.1:CDS
AAATTCTAACTTTGGATCTT+TGG	0.211667	7:-10292659	MsaT035290.1:CDS
GAACTATGAATAATGGATTA+AGG	0.228641	7:-10292537	MsaT035290.1:CDS
CAATTCCCTTACATACAAAA+AGG	0.229371	7:-10292955	MsaT035290.1:CDS
TTCTGGGTATGCTCACTTCT+TGG	0.242331	7:+10288240	None:intergenic
ACTTACTTTCCAATCCAATT+TGG	0.246719	7:+10293594	None:intergenic
TAGATCCGAATCGGAGTATT+TGG	0.249167	7:+10290455	None:intergenic
CTGCTTGCTATTAACCAAAT+TGG	0.262572	7:-10293608	MsaT035290.1:CDS
GGATTCTATTTCTGATATTA+GGG	0.272190	7:-10292398	MsaT035290.1:CDS
AACTTGTGAGGCATAATATT+AGG	0.274422	7:+10292631	None:intergenic
AAATGTAGCAAGTCACTTAC+AGG	0.277878	7:-10293391	MsaT035290.1:intron
GACATTAGGTTTGAACGATA+TGG	0.280554	7:-10290120	MsaT035290.1:CDS
ATGACACACTTACTTATTAT+AGG	0.282733	7:+10294730	None:intergenic
TAAGCTCAGTTATCTTTATA+CGG	0.284237	7:-10290202	MsaT035290.1:intron
CAAAGCATGACGAGCATCTT+TGG	0.288698	7:+10294864	None:intergenic
TCAAACTCTTGACCTTTATC+AGG	0.293685	7:-10289711	MsaT035290.1:intron
TTTGGAATTCAGCTGAATAA+TGG	0.297513	7:-10292580	MsaT035290.1:CDS
CAACATGATGCGTTGGAAAT+TGG	0.299414	7:+10292980	None:intergenic
TTCTACACATAGAACCATTC+AGG	0.300060	7:-10289918	MsaT035290.1:CDS
ACTTACTTATTATAGGTATC+TGG	0.300133	7:+10294737	None:intergenic
TATTCAGCTGAATTCCAAAA+TGG	0.301790	7:+10292584	None:intergenic
ATTCAATAATTTGACTCATT+TGG	0.307731	7:-10289789	MsaT035290.1:CDS
TTAAGAAACAAAAGCTTGTT+TGG	0.309580	7:-10293655	MsaT035290.1:CDS
GGAATTGGAACTATGAATAA+TGG	0.315352	7:-10292544	MsaT035290.1:CDS
TTGAAGTCTTCAGCACAAAA+AGG	0.324880	7:+10293842	None:intergenic
ATCTCAAAGACACTAGAAAA+TGG	0.331289	7:-10293887	MsaT035290.1:CDS
TTTACTCAACGTGACTTAGA+TGG	0.347030	7:-10292307	MsaT035290.1:CDS
TGCTCTATTCAACTTTGTTA+AGG	0.351980	7:+10289996	None:intergenic
TTCAAGATTGGGAACAAGTT+AGG	0.352069	7:-10292924	MsaT035290.1:CDS
AGATATTTGGAAATATGTTA+TGG	0.355548	7:-10293819	MsaT035290.1:CDS
GACAATTATTCTCATGTTCA+AGG	0.357276	7:-10289357	MsaT035290.1:CDS
TTGAGTGAGGGTAATATTAT+GGG	0.358347	7:+10290159	None:intergenic
GGCTGTTCCAAAGAAAATTC+TGG	0.359742	7:-10293445	MsaT035290.1:CDS
AACTATGAATAATGGATTAA+GGG	0.363152	7:-10292536	MsaT035290.1:CDS
GAAGATACAAGGCAAAATTT+GGG	0.367233	7:-10289611	MsaT035290.1:CDS
TTTCATCTGGTGGGAATCAA+TGG	0.369590	7:-10294793	MsaT035290.1:CDS
AAGGGTTGGCTCTTCAAGAT+TGG	0.372343	7:-10292936	MsaT035290.1:CDS
ACTTGTGAGGCATAATATTA+GGG	0.374491	7:+10292632	None:intergenic
AGGTCAAGAGTTTGAAGCTT+GGG	0.375430	7:+10289719	None:intergenic
CCCTACATTTGAAAGACATT+AGG	0.378941	7:-10290134	MsaT035290.1:CDS
GGAGCAGAAATGGTTGGAAT+TGG	0.379114	7:-10292559	MsaT035290.1:CDS
TGCTATTAACCAAATTGGAT+TGG	0.390260	7:-10293603	MsaT035290.1:CDS
ACTTGCACTATGCGGGACTT+TGG	0.393431	7:-10289493	MsaT035290.1:CDS
ACTATGCGGGACTTTGGATT+TGG	0.394166	7:-10289487	MsaT035290.1:CDS
CGAATCGGAGTATTTGGTTT+CGG	0.397326	7:+10290461	None:intergenic
CGTTATTGCAGAATTTCATC+TGG	0.397811	7:-10294806	MsaT035290.1:CDS
TAAGGTTTCACAGCGTCCTT+TGG	0.408651	7:+10290014	None:intergenic
GGCCATGGTCAAAACAGGTT+TGG	0.410656	7:-10292856	MsaT035290.1:CDS
CCTAATGTCTTTCAAATGTA+GGG	0.413224	7:+10290134	None:intergenic
TAGAGGAGAACAAGGATTGA+TGG	0.421210	7:-10292755	MsaT035290.1:CDS
CTACTTTCACTAATGAGGTT+GGG	0.423849	7:-10292249	MsaT035290.1:CDS
ATCACTCTTCAAGAAAATGA+AGG	0.424779	7:-10294841	MsaT035290.1:CDS
ACCTAATGTCTTTCAAATGT+AGG	0.428587	7:+10290133	None:intergenic
GCTGAATAATGGAGCAGAAA+TGG	0.428747	7:-10292569	MsaT035290.1:CDS
CTGCGAGATGTTGAAGAGAA+AGG	0.429447	7:-10293183	MsaT035290.1:CDS
TCAACTTCCTCTGAATTTCT+GGG	0.430371	7:+10288224	None:intergenic
CAGTGATGTCTGAAGACAAT+AGG	0.437039	7:-10293919	MsaT035290.1:CDS
GAGTTTGAAGCTTGGGGCAA+TGG	0.438174	7:+10289726	None:intergenic
TTAAGAAACAAACCTGATAA+AGG	0.439287	7:+10289699	None:intergenic
AGGGTTGGCTCTTCAAGATT+GGG	0.442206	7:-10292935	MsaT035290.1:CDS
GCGTTGGAAATTGGTTGAAA+TGG	0.443167	7:+10292989	None:intergenic
ATAATGGCCATGGTCAAAAC+AGG	0.444362	7:-10292861	MsaT035290.1:CDS
CTTCTTCAAGTTTGTTAACA+AGG	0.448083	7:-10292726	MsaT035290.1:CDS
AGTTGAAGATCTTCAAGAAC+TGG	0.448679	7:+10290069	None:intergenic
GGAGCAGTTGTAGATCTATA+CGG	0.455096	7:+10289750	None:intergenic
CTAACTTAATGTGCTTATGC+TGG	0.461272	7:+10289458	None:intergenic
TGAAAACTTCGATCAAGAAT+AGG	0.470409	7:+10289568	None:intergenic
GCTACTTTCACTAATGAGGT+TGG	0.473474	7:-10292250	MsaT035290.1:CDS
TGAGTCAAATTATTGAATGT+AGG	0.480068	7:+10289794	None:intergenic
GGTTCAAGGAGGGTTTGCTC+TGG	0.484414	7:-10292419	MsaT035290.1:CDS
GAGTCAAATTATTGAATGTA+GGG	0.484959	7:+10289795	None:intergenic
GCAGGATCAGTTAATAATGA+AGG	0.491730	7:-10292352	MsaT035290.1:CDS
TTCATCTGGTGGGAATCAAT+GGG	0.491841	7:-10294792	MsaT035290.1:CDS
AGTGTCTTTGAGATTAAACT+TGG	0.491853	7:+10293896	None:intergenic
GTTGAAGAGAAAGGAATGGT+TGG	0.491902	7:-10293174	MsaT035290.1:CDS
TCTGATATTAGGGGAGGGAG+TGG	0.493957	7:-10292388	MsaT035290.1:CDS
CTTGAATATCTCTCTCTCCT+TGG	0.495918	7:+10293681	None:intergenic
GATTGGGAACAAGTTAGGCT+TGG	0.497594	7:-10292919	MsaT035290.1:CDS
TAGTGCTACTTTCACTAATG+AGG	0.497764	7:-10292254	MsaT035290.1:CDS
GATGTTATCACTTTCAAATG+TGG	0.498865	7:-10289944	MsaT035290.1:CDS
TTAGTGATATATACCCTGAA+TGG	0.499073	7:+10289904	None:intergenic
TAGGCTTGGAAAATCAAAGT+TGG	0.508790	7:-10292905	MsaT035290.1:CDS
ATTTCTCTGATCACAGAACT+TGG	0.510262	7:+10293105	None:intergenic
GATGTTGTTGCGGAGAATAA+TGG	0.517615	7:-10292877	MsaT035290.1:CDS
ACAATTATTCTCATGTTCAA+GGG	0.521732	7:-10289356	MsaT035290.1:CDS
TTGTGCTCGCGAAAAGCTGC+TGG	0.522839	7:-10290411	MsaT035290.1:intron
CAGTTATCTTTATACGGATG+AGG	0.523960	7:-10290196	MsaT035290.1:CDS
TTTGAAGCTTGGGGCAATGG+TGG	0.532688	7:+10289729	None:intergenic
GAATAAGTGTAGATCCGAAT+CGG	0.532900	7:+10290446	None:intergenic
ATTGCAGAATTTCATCTGGT+GGG	0.533922	7:-10294802	MsaT035290.1:CDS
AATTTGAGACAGTTTCAACT+TGG	0.534813	7:+10289384	None:intergenic
TTCTTCAAGTTTGTTAACAA+GGG	0.536372	7:-10292725	MsaT035290.1:CDS
TCTACACATAGAACCATTCA+GGG	0.539077	7:-10289917	MsaT035290.1:intron
ACTTCAATATTTGCAAACAC+TGG	0.542849	7:-10293046	MsaT035290.1:CDS
AGTGGAAGAAAGTTTCTAGC+AGG	0.545083	7:-10292370	MsaT035290.1:CDS
AGCTAGTGGAAGCACCATCA+TGG	0.545478	7:+10292788	None:intergenic
GACTTAGATGGAAATGTTGT+GGG	0.546520	7:-10292295	MsaT035290.1:CDS
CCTTACGACTTGCACTATGC+GGG	0.546622	7:-10289500	MsaT035290.1:CDS
CCCGCATAGTGCAAGTCGTA+AGG	0.549415	7:+10289500	None:intergenic
TATTGCAGAATTTCATCTGG+TGG	0.554479	7:-10294803	MsaT035290.1:CDS
AATAATGGAGCAGAAATGGT+TGG	0.555811	7:-10292565	MsaT035290.1:CDS
TCCACTCGTCAAAATTCCAA+AGG	0.556141	7:-10290030	MsaT035290.1:CDS
CGAAACCAAATACTCCGATT+CGG	0.558067	7:-10290460	MsaT035290.1:CDS
AGGTTTGATGAAAGGCAAGA+TGG	0.559806	7:+10289520	None:intergenic
CTATTTCTGATATTAGGGGA+GGG	0.562145	7:-10292393	MsaT035290.1:CDS
TCTATATGATGAAAAGCTAG+TGG	0.562508	7:+10292774	None:intergenic
AATTTGGTTTGGTTCAAGGA+GGG	0.563542	7:-10292429	MsaT035290.1:CDS
GAAGAGAAAGGAATGGTTGG+AGG	0.566539	7:-10293171	MsaT035290.1:CDS
GATATTATTGATTGTGATTG+CGG	0.570803	7:-10289973	MsaT035290.1:CDS
GTTTGCAAATATTGAAGTGT+TGG	0.578096	7:+10293051	None:intergenic
AAGGTCAAGAGTTTGAAGCT+TGG	0.581524	7:+10289718	None:intergenic
AATTGGCCAACATGATGCGT+TGG	0.583725	7:+10292973	None:intergenic
TCTATTTCTGATATTAGGGG+AGG	0.587568	7:-10292394	MsaT035290.1:CDS
GAGCATACCCAGAAATTCAG+AGG	0.591726	7:-10288231	MsaT035290.1:CDS
AAATTTGGTTTGGTTCAAGG+AGG	0.591953	7:-10292430	MsaT035290.1:CDS
GGTCAAGAGTTTGAAGCTTG+GGG	0.592283	7:+10289720	None:intergenic
AAGTCGTAAGGTTTGATGAA+AGG	0.593935	7:+10289512	None:intergenic
TCATCATATAGAGGAGAACA+AGG	0.594028	7:-10292763	MsaT035290.1:CDS
TTGCTAATATACTCATGGCA+TGG	0.599578	7:-10297773	None:intergenic
GACATTAGAAACCAGACTCA+TGG	0.599860	7:-10292688	MsaT035290.1:CDS
TATTATTAACAGAAGATACA+AGG	0.601708	7:-10289622	MsaT035290.1:intron
GATTCTATTTCTGATATTAG+GGG	0.603781	7:-10292397	MsaT035290.1:CDS
AGAAAGAGTAAAGAATGCCA+AGG	0.604346	7:-10293698	MsaT035290.1:CDS
AAGATACAAGGCAAAATTTG+GGG	0.605281	7:-10289610	MsaT035290.1:CDS
ACCTTACGACTTGCACTATG+CGG	0.606317	7:-10289501	MsaT035290.1:CDS
CAATTTCCAACGCATCATGT+TGG	0.607673	7:-10292979	MsaT035290.1:CDS
TGACTTAGATGGAAATGTTG+TGG	0.614635	7:-10292296	MsaT035290.1:CDS
GTTGGAAGCTGATGTTGTTG+CGG	0.645784	7:-10292887	MsaT035290.1:CDS
AAAGTCTTCATACCTTGTTG+CGG	0.645913	7:+10292170	None:intergenic
TGACAAGAATCTCCGCAACA+AGG	0.646714	7:-10292182	MsaT035290.1:intron
CTCATGGCATGGCAATACAA+AGG	0.648754	7:-10297762	MsaT035290.1:intron
ACACTGGCATATCAAACAAG+AGG	0.654807	7:-10293030	MsaT035290.1:CDS
AGATGTTGAAGAGAAAGGAA+TGG	0.660542	7:-10293178	MsaT035290.1:CDS
ACATCAGAAGTAAACTTGTG+AGG	0.669577	7:+10292619	None:intergenic
AGATACAAGGCAAAATTTGG+GGG	0.669964	7:-10289609	MsaT035290.1:CDS
GTTGCGGAGAATAATGGCCA+TGG	0.690083	7:-10292871	MsaT035290.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	10288224	10297781	10288224	ID=MsaG035290
Chr7	mRNA	10288224	10297781	10288224	ID=MsaT035290.1;Parent=MsaG035290
Chr7	exon	10288224	10288276	10288224	ID=MsaT035290.1.exon10;Parent=MsaT035290.1
Chr7	CDS	10288224	10288276	10288224	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289344	10289632	10289344	ID=MsaT035290.1.exon9;Parent=MsaT035290.1
Chr7	CDS	10289344	10289632	10289344	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289712	10289837	10289712	ID=MsaT035290.1.exon8;Parent=MsaT035290.1
Chr7	CDS	10289712	10289837	10289712	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289918	10290220	10289918	ID=MsaT035290.1.exon7;Parent=MsaT035290.1
Chr7	CDS	10289918	10290220	10289918	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10290412	10290495	10290412	ID=MsaT035290.1.exon6;Parent=MsaT035290.1
Chr7	CDS	10290412	10290495	10290412	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10292183	10293220	10292183	ID=MsaT035290.1.exon5;Parent=MsaT035290.1
Chr7	CDS	10292183	10293220	10292183	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10293392	10293468	10293392	ID=MsaT035290.1.exon4;Parent=MsaT035290.1
Chr7	CDS	10293392	10293468	10293392	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10293600	10293938	10293600	ID=MsaT035290.1.exon3;Parent=MsaT035290.1
Chr7	CDS	10293600	10293938	10293600	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10294743	10294895	10294743	ID=MsaT035290.1.exon2;Parent=MsaT035290.1
Chr7	CDS	10294743	10294895	10294743	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10297763	10297781	10297763	ID=MsaT035290.1.exon1;Parent=MsaT035290.1
Chr7	CDS	10297763	10297781	10297763	ID=cds.MsaT035290.1;Parent=MsaT035290.1

Gene Sequence

>MsaT035290.1

ATGGCATGGCAATACAAAGTTGTTACTGCCAAAGATGCTCGTCATGCTTTGATCACTCTTCAAGAAAATGAAGGCTTGTTTGATCTCGTTATTGCAGAATTTCATCTGGTGGGAATCAATGGGTTAGAATTTCAAAAGCATATTAAAGATCAATTCCAGATACCTATAATAATGATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACACTAGAAAATGGAGCTGCACAATATATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTTGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACAAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTGCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAAGGCTGTTCCAAAGAAAATTCTGGAGATCATGAATATACCAAACCTGACCAGAGAAAATGTAGCAAGTCACTTACAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTATAAGATCAAGTTTTGCATCAGGTCTACCAAGTTCTGTGATCAGAGAAATCGAAGAAAAAAGGACAAACAAACTTCATGCGCCAACACTTCAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACGCATCATGTTGGCCAATTCCCTTACATACAAAAAGGGTTGGCTCTTCAAGATTGGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCTGATGTTGTTGCGGAGAATAATGGCCATGGTCAAAACAGGTTTGGAATAAGCTCTTCAAAGCTTCCATTTTTTCAAGCAAAAAACTCATTCCATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGAGAACAAGGATTGATGGTTTCTTCTTCTTCAAGTTTGTTAACAAGGGATTTTAAATTTGGTGACATTAGAAACCAGACTCATGGTGTTAAAAATTCTAACTTTGGATCTTTGGCAAGCCCTAATATTATGCCTCACAAGTTTACTTCTGATGTAAGAAACAATAACCATTTTGGAATTCAGCTGAATAATGGAGCAGAAATGGTTGGAATTGGAACTATGAATAATGGATTAAGGGATTCTAGTGCAAATAACAATAGTTTTTGCTTCAACGAAAGGGGTCAAAATGAAAATATAAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGCTCTGGATTCTATTTCTGATATTAGGGGAGGGAGTGGAAGAAAGTTTCTAGCAGGATCAGTTAATAATGAAGGAAATGTTTCAAAGAATAGACAATTTACTCAACGTGACTTAGATGGAAATGTTGTGGGAAATGAGCAAAAGTATAATAGTGCTACTTTCACTAATGAGGTTGGGTTCAACAAAATTGAATTCAACAATTTTGATTACTTAATGGATGATGACAAGAATCTCCGCAACAAGATATCAACTTTACCGAAACCAAATACTCCGATTCGGATCTACACTTATTCGTTGACTCCATCTTGTGCTCGCGAAAAGCTGCTGCTCAGTTATCTTTATACGGATGAGGACTTTTGTTATTATCCCATAATATTACCCTCACTCAAAACCCTACATTTGAAAGACATTAGGTTTGAACGATATGGAGATCTTAAGCGTCTTCTAGAGTATTGTCCAGTTCTTGAAGATCTTCAACTATATGTTGTAATCTTTTCCACTCGTCAAAATTCCAAAGGACGCTGTGAAACCTTAACAAAGTTGAATAGAGCAGATATTATTGATTGTGATTGCGGTGTTCTGATGTTATCACTTTCAAATGTGGAATTTCTACACATAGAACCATTCAGGGTTTATCTGCATAACGACTTCCCTACATTCAATAATTTGACTCATTTGGTGATAAACTATCATTACCGTATAGATCTACAACTGCTCCACCATTGCCCCAAGCTTCAAACTCTTGACCTTTATCAGAAGATACAAGGCAAAATTTGGGGGAATAAGTACGACTGTGTTCCTATTCTTGATCGAAGTTTTCATAACTGGACCCTTCCAAAATCTGTTCCATCTTGCCTTTCATCAAACCTTACGACTTGCACTATGCGGGACTTTGGATTTGGAGATCTCCAGCATAAGCACATTAAGTTAGCAAGATATATTCTGAATAATTCAGCAGTTTTAGAAACTATGTCAATCTGGTCCAAGTTGAAACTGTCTCAAATTAAAAGACAATTATTCTCATGTTCAAGGGCTTCTGCAACATGGCGCCGAAGAAAACCAAGAAGTGAGCATACCCAGAAATTCAGAGGAAGTTGA

Protein sequence

>MsaT035290.1

MAWQYKVVTAKDARHALITLQENEGLFDLVIAEFHLVGINGLEFQKHIKDQFQIPIIMMSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIWKYVMEAKKEKLFIESLFVRSEEEEISSEPKNKKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKAVPKKILEIMNIPNLTRENVASHLQKYRIFLRDVEEKGMVGGISHRAIRSSFASGLPSSVIREIEEKRTNKLHAPTLQYLQTLAYQTRGANNVFNHFNQFPTHHVGQFPYIQKGLALQDWEQVRLGKSKLEADVVAENNGHGQNRFGISSSKLPFFQAKNSFHDGASTSFSSYRGEQGLMVSSSSSLLTRDFKFGDIRNQTHGVKNSNFGSLASPNIMPHKFTSDVRNNNHFGIQLNNGAEMVGIGTMNNGLRDSSANNNSFCFNERGQNENINFRSFVNEKFGLVQGGFALDSISDIRGGSGRKFLAGSVNNEGNVSKNRQFTQRDLDGNVVGNEQKYNSATFTNEVGFNKIEFNNFDYLMDDDKNLRNKISTLPKPNTPIRIYTYSLTPSCAREKLLLSYLYTDEDFCYYPIILPSLKTLHLKDIRFERYGDLKRLLEYCPVLEDLQLYVVIFSTRQNSKGRCETLTKLNRADIIDCDCGVLMLSLSNVEFLHIEPFRVYLHNDFPTFNNLTHLVINYHYRIDLQLLHHCPKLQTLDLYQKIQGKIWGNKYDCVPILDRSFHNWTLPKSVPSCLSSNLTTCTMRDFGFGDLQHKHIKLARYILNNSAVLETMSIWSKLKLSQIKRQLFSCSRASATWRRRKPRSEHTQKFRGS*