AlfalfaGEDB | MsaG035290

M. sativa ssp. caerulea / MsaG035290

KEGG: K14491
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	AES78253.1	89.444	540	57	0	4	543	14	553	0.0	938

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	sp\|Q9ZWJ9\|ARR2_ARATH	36.400	250	129	5	1	226	48	291	5.14e-40	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	tr\|G7L033\|G7L033_MEDTR	89.444	540	57	0	4	543	14	553	0.0	938

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TFs/TRs:

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Gene ID	Type	Classification
MsaG035290	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004159	MsaG035290	0.801711	1.327670e-48	1.865855e-46
MsaG004431	MsaG035290	0.807223	9.534592e-50	1.522963e-47
MsaG006602	MsaG035290	0.845515	7.267168e-59	3.386775e-56
MsaG008114	MsaG035290	0.816062	1.164167e-51	2.311735e-49
MsaG008592	MsaG035290	0.814838	2.172799e-51	4.183039e-49
MsaG012203	MsaG035290	0.817122	6.754311e-52	1.378284e-49
MsaG012204	MsaG035290	0.816935	7.435014e-52	1.509894e-49
MsaG013321	MsaG035290	0.821017	8.865056e-53	2.003009e-50
MsaG014215	MsaG035290	0.821645	6.358665e-53	1.460768e-50
MsaG015184	MsaG035290	0.805041	2.731597e-49	4.145289e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	MtrunA17_Chr7g0223971	83.205	518	54	1	59	543	1	518	0.0	814
MsaG035290	MtrunA17_Chr7g0223991	75.587	213	32	3	214	424	24	218	2.12e-97	303
MsaG035290	MtrunA17_Chr6g0473731	45.370	432	166	12	57	471	10	388	1.02e-95	306
MsaG035290	MtrunA17_Chr7g0215541	59.023	266	85	6	549	809	92	338	9.37e-77	253
MsaG035290	MtrunA17_Chr3g0132631	54.018	224	99	2	585	808	147	366	1.01e-63	218
MsaG035290	MtrunA17_Chr7g0227241	51.240	242	112	3	569	809	24	260	6.37e-63	213
MsaG035290	MtrunA17_Chr2g0277281	47.761	268	126	5	545	809	138	394	1.26e-61	213
MsaG035290	MtrunA17_Chr2g0278091	48.718	234	109	4	587	809	135	368	2.89e-59	206
MsaG035290	MtrunA17_Chr2g0278791	45.353	269	119	6	549	809	117	365	7.84e-56	197
MsaG035290	MtrunA17_Chr1g0207991	44.488	254	126	6	563	809	20	265	3.24e-52	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035290	AT3G16857.1	34.733	262	129	5	5	230	61	316	6.48e-40	157
MsaG035290	AT3G16857.2	34.733	262	129	5	5	230	61	316	9.19e-40	157
MsaG035290	AT3G16857.3	35.060	251	121	5	16	230	2	246	8.00e-39	154
MsaG035290	AT5G07210.2	36.260	262	123	7	4	223	39	298	1.78e-37	149
MsaG035290	AT5G07210.1	36.293	259	121	7	7	223	50	306	4.33e-36	145
MsaG035290	AT2G25180.1	36.916	214	123	2	4	205	40	253	4.99e-35	142
MsaG035290	AT4G31920.1	34.091	220	144	1	4	223	40	258	3.33e-34	139
MsaG035290	AT2G01760.1	36.486	222	118	4	5	203	35	256	4.73e-34	135
MsaG035290	AT2G01760.2	36.036	222	119	4	5	203	63	284	1.02e-32	132
MsaG035290	AT5G58080.1	29.907	321	173	9	4	283	41	350	1.49e-31	131

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTTCATACCTTGTTG+CGG	0.645913	7:+10292170	None:intergenic
AAATGTAGCAAGTCACTTAC+AGG	0.277878	7:-10293391	MsaT035290.1:intron
AAATTCTAACTTTGGATCTT+TGG	0.211667	7:-10292659	MsaT035290.1:CDS
AAATTTGGTTTGGTTCAAGG+AGG	0.591953	7:-10292430	MsaT035290.1:CDS
AACTATGAATAATGGATTAA+GGG	0.363152	7:-10292536	MsaT035290.1:CDS
AACTTGTGAGGCATAATATT+AGG	0.274422	7:+10292631	None:intergenic
AAGATACAAGGCAAAATTTG+GGG	0.605281	7:-10289610	MsaT035290.1:CDS
AAGGGTTGGCTCTTCAAGAT+TGG	0.372343	7:-10292936	MsaT035290.1:CDS
AAGGTCAAGAGTTTGAAGCT+TGG	0.581524	7:+10289718	None:intergenic
AAGTCGTAAGGTTTGATGAA+AGG	0.593935	7:+10289512	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	10288224	10297781	10288224	ID=MsaG035290
Chr7	mRNA	10288224	10297781	10288224	ID=MsaT035290.1;Parent=MsaG035290
Chr7	exon	10288224	10288276	10288224	ID=MsaT035290.1.exon10;Parent=MsaT035290.1
Chr7	CDS	10288224	10288276	10288224	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289344	10289632	10289344	ID=MsaT035290.1.exon9;Parent=MsaT035290.1
Chr7	CDS	10289344	10289632	10289344	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289712	10289837	10289712	ID=MsaT035290.1.exon8;Parent=MsaT035290.1
Chr7	CDS	10289712	10289837	10289712	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10289918	10290220	10289918	ID=MsaT035290.1.exon7;Parent=MsaT035290.1
Chr7	CDS	10289918	10290220	10289918	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10290412	10290495	10290412	ID=MsaT035290.1.exon6;Parent=MsaT035290.1
Chr7	CDS	10290412	10290495	10290412	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10292183	10293220	10292183	ID=MsaT035290.1.exon5;Parent=MsaT035290.1
Chr7	CDS	10292183	10293220	10292183	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10293392	10293468	10293392	ID=MsaT035290.1.exon4;Parent=MsaT035290.1
Chr7	CDS	10293392	10293468	10293392	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10293600	10293938	10293600	ID=MsaT035290.1.exon3;Parent=MsaT035290.1
Chr7	CDS	10293600	10293938	10293600	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10294743	10294895	10294743	ID=MsaT035290.1.exon2;Parent=MsaT035290.1
Chr7	CDS	10294743	10294895	10294743	ID=cds.MsaT035290.1;Parent=MsaT035290.1
Chr7	exon	10297763	10297781	10297763	ID=MsaT035290.1.exon1;Parent=MsaT035290.1
Chr7	CDS	10297763	10297781	10297763	ID=cds.MsaT035290.1;Parent=MsaT035290.1

Gene Sequence

>MsaT035290.1

ATGGCATGGCAATACAAAGTTGTTACTGCCAAAGATGCTCGTCATGCTTTGATCACTCTTCAAGAAAATGAAGGCTTGTTTGATCTCGTTATTGCAGAATTTCATCTGGTGGGAATCAATGGGTTAGAATTTCAAAAGCATATTAAAGATCAATTCCAGATACCTATAATAATGATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACACTAGAAAATGGAGCTGCACAATATATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTTGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACAAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTGCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAAGGCTGTTCCAAAGAAAATTCTGGAGATCATGAATATACCAAACCTGACCAGAGAAAATGTAGCAAGTCACTTACAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTATAAGATCAAGTTTTGCATCAGGTCTACCAAGTTCTGTGATCAGAGAAATCGAAGAAAAAAGGACAAACAAACTTCATGCGCCAACACTTCAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACGCATCATGTTGGCCAATTCCCTTACATACAAAAAGGGTTGGCTCTTCAAGATTGGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCTGATGTTGTTGCGGAGAATAATGGCCATGGTCAAAACAGGTTTGGAATAAGCTCTTCAAAGCTTCCATTTTTTCAAGCAAAAAACTCATTCCATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGAGAACAAGGATTGATGGTTTCTTCTTCTTCAAGTTTGTTAACAAGGGATTTTAAATTTGGTGACATTAGAAACCAGACTCATGGTGTTAAAAATTCTAACTTTGGATCTTTGGCAAGCCCTAATATTATGCCTCACAAGTTTACTTCTGATGTAAGAAACAATAACCATTTTGGAATTCAGCTGAATAATGGAGCAGAAATGGTTGGAATTGGAACTATGAATAATGGATTAAGGGATTCTAGTGCAAATAACAATAGTTTTTGCTTCAACGAAAGGGGTCAAAATGAAAATATAAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGCTCTGGATTCTATTTCTGATATTAGGGGAGGGAGTGGAAGAAAGTTTCTAGCAGGATCAGTTAATAATGAAGGAAATGTTTCAAAGAATAGACAATTTACTCAACGTGACTTAGATGGAAATGTTGTGGGAAATGAGCAAAAGTATAATAGTGCTACTTTCACTAATGAGGTTGGGTTCAACAAAATTGAATTCAACAATTTTGATTACTTAATGGATGATGACAAGAATCTCCGCAACAAGATATCAACTTTACCGAAACCAAATACTCCGATTCGGATCTACACTTATTCGTTGACTCCATCTTGTGCTCGCGAAAAGCTGCTGCTCAGTTATCTTTATACGGATGAGGACTTTTGTTATTATCCCATAATATTACCCTCACTCAAAACCCTACATTTGAAAGACATTAGGTTTGAACGATATGGAGATCTTAAGCGTCTTCTAGAGTATTGTCCAGTTCTTGAAGATCTTCAACTATATGTTGTAATCTTTTCCACTCGTCAAAATTCCAAAGGACGCTGTGAAACCTTAACAAAGTTGAATAGAGCAGATATTATTGATTGTGATTGCGGTGTTCTGATGTTATCACTTTCAAATGTGGAATTTCTACACATAGAACCATTCAGGGTTTATCTGCATAACGACTTCCCTACATTCAATAATTTGACTCATTTGGTGATAAACTATCATTACCGTATAGATCTACAACTGCTCCACCATTGCCCCAAGCTTCAAACTCTTGACCTTTATCAGAAGATACAAGGCAAAATTTGGGGGAATAAGTACGACTGTGTTCCTATTCTTGATCGAAGTTTTCATAACTGGACCCTTCCAAAATCTGTTCCATCTTGCCTTTCATCAAACCTTACGACTTGCACTATGCGGGACTTTGGATTTGGAGATCTCCAGCATAAGCACATTAAGTTAGCAAGATATATTCTGAATAATTCAGCAGTTTTAGAAACTATGTCAATCTGGTCCAAGTTGAAACTGTCTCAAATTAAAAGACAATTATTCTCATGTTCAAGGGCTTCTGCAACATGGCGCCGAAGAAAACCAAGAAGTGAGCATACCCAGAAATTCAGAGGAAGTTGA

Protein sequence

>MsaT035290.1

MAWQYKVVTAKDARHALITLQENEGLFDLVIAEFHLVGINGLEFQKHIKDQFQIPIIMMSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIWKYVMEAKKEKLFIESLFVRSEEEEISSEPKNKKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKAVPKKILEIMNIPNLTRENVASHLQKYRIFLRDVEEKGMVGGISHRAIRSSFASGLPSSVIREIEEKRTNKLHAPTLQYLQTLAYQTRGANNVFNHFNQFPTHHVGQFPYIQKGLALQDWEQVRLGKSKLEADVVAENNGHGQNRFGISSSKLPFFQAKNSFHDGASTSFSSYRGEQGLMVSSSSSLLTRDFKFGDIRNQTHGVKNSNFGSLASPNIMPHKFTSDVRNNNHFGIQLNNGAEMVGIGTMNNGLRDSSANNNSFCFNERGQNENINFRSFVNEKFGLVQGGFALDSISDIRGGSGRKFLAGSVNNEGNVSKNRQFTQRDLDGNVVGNEQKYNSATFTNEVGFNKIEFNNFDYLMDDDKNLRNKISTLPKPNTPIRIYTYSLTPSCAREKLLLSYLYTDEDFCYYPIILPSLKTLHLKDIRFERYGDLKRLLEYCPVLEDLQLYVVIFSTRQNSKGRCETLTKLNRADIIDCDCGVLMLSLSNVEFLHIEPFRVYLHNDFPTFNNLTHLVINYHYRIDLQLLHHCPKLQTLDLYQKIQGKIWGNKYDCVPILDRSFHNWTLPKSVPSCLSSNLTTCTMRDFGFGDLQHKHIKLARYILNNSAVLETMSIWSKLKLSQIKRQLFSCSRASATWRRRKPRSEHTQKFRGS*