AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG035394


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG035394 MtrunA17_Chr7g0216891 97.635 296 6 1 1 295 1 296 0.0 596
MsaG035394 MtrunA17_Chr7g0216891 98.013 151 2 1 294 443 434 584 8.29e-97 302
MsaG035394 MtrunA17_Chr4g0060271 49.606 254 108 8 37 277 68 314 6.38e-70 233
MsaG035394 MtrunA17_Chr7g0270831 42.791 215 61 3 197 349 195 409 2.12e-51 179
MsaG035394 MtrunA17_Chr4g0051181 87.500 80 10 0 200 279 225 304 5.51e-48 171
MsaG035394 MtrunA17_Chr2g0288871 39.600 250 128 6 31 277 135 364 1.79e-45 166
MsaG035394 MtrunA17_Chr3g0099641 67.619 105 33 1 191 295 225 328 9.78e-45 162
MsaG035394 MtrunA17_Chr4g0075201 33.516 364 154 11 45 382 126 427 8.01e-44 160
MsaG035394 MtrunA17_Chr2g0322391 33.750 320 149 7 14 295 132 426 7.15e-41 154
MsaG035394 MtrunA17_Chr2g0302391 61.386 101 38 1 191 291 185 284 4.51e-37 140
MsaG035394 MtrunA17_Chr4g0025051 51.181 127 56 1 169 295 292 412 5.15e-37 142
MsaG035394 MtrunA17_Chr4g0025061 48.819 127 59 1 169 295 317 437 5.73e-36 140
MsaG035394 MtrunA17_Chr4g0024391 45.669 127 63 2 169 295 186 306 1.38e-31 126
MsaG035394 MtrunA17_Chr4g0001361 35.465 172 82 4 197 339 139 310 5.31e-26 107
MsaG035394 MtrunA17_Chr3g0136961 35.616 146 71 3 217 339 137 282 1.94e-25 105
MsaG035394 MtrunA17_Chr1g0150281 33.333 162 97 2 201 351 123 284 3.71e-25 104
MsaG035394 MtrunA17_Chr1g0150271 29.493 217 125 6 169 366 45 252 3.54e-24 100
MsaG035394 MtrunA17_Chr2g0333851 35.915 142 68 4 219 339 170 309 2.54e-23 100
MsaG035394 MtrunA17_Chr5g0432161 55.000 80 31 2 200 275 399 477 9.55e-23 100
MsaG035394 MtrunA17_Chr5g0432161 52.542 59 26 2 218 276 244 300 9.03e-13 70.1
MsaG035394 MtrunA17_Chr3g0106491 56.338 71 30 1 205 275 352 421 2.40e-22 99.4
MsaG035394 MtrunA17_Chr3g0106491 51.613 62 28 2 218 279 198 257 3.24e-13 71.6
MsaG035394 MtrunA17_Chr3g0101131 38.462 130 61 3 157 275 350 471 4.66e-22 99.0
MsaG035394 MtrunA17_Chr3g0101131 50.847 59 27 2 218 276 243 299 2.08e-11 65.9
MsaG035394 MtrunA17_Chr7g0243891 49.412 85 42 1 202 286 358 441 5.05e-22 98.6
MsaG035394 MtrunA17_Chr7g0243891 53.448 58 25 2 219 276 217 272 3.75e-12 68.2
MsaG035394 MtrunA17_Chr3g0079691 39.695 131 61 4 205 318 482 611 6.03e-22 99.0
MsaG035394 MtrunA17_Chr3g0079691 47.826 69 33 3 208 276 271 336 7.75e-12 67.4
MsaG035394 MtrunA17_Chr5g0445311 41.026 117 67 2 180 296 327 441 7.15e-22 98.2
MsaG035394 MtrunA17_Chr5g0445311 52.542 59 26 2 218 276 200 256 5.68e-12 67.8
MsaG035394 MtrunA17_Chr5g0418191 42.276 123 68 3 155 275 255 376 2.81e-21 95.5
MsaG035394 MtrunA17_Chr5g0418191 52.459 61 25 3 218 277 151 208 2.91e-12 68.2
MsaG035394 MtrunA17_Chr7g0249301 48.810 84 39 2 195 275 266 348 3.16e-21 95.1
MsaG035394 MtrunA17_Chr7g0249301 50.000 60 28 2 216 275 60 117 9.48e-11 63.2
MsaG035394 MtrunA17_Chr2g0294231 50.649 77 37 1 205 281 190 265 4.48e-21 94.4
MsaG035394 MtrunA17_Chr4g0004911 52.000 75 35 1 201 275 319 392 6.45e-21 95.1
MsaG035394 MtrunA17_Chr4g0004911 51.724 58 27 1 219 276 185 241 5.32e-14 73.9
MsaG035394 MtrunA17_Chr7g0249311 47.619 84 40 2 195 275 366 448 1.47e-20 94.7
MsaG035394 MtrunA17_Chr7g0270191 35.135 148 81 4 188 321 107 253 2.48e-20 90.9
MsaG035394 MtrunA17_Chr4g0042831 39.098 133 69 4 151 275 206 334 2.63e-20 92.4
MsaG035394 MtrunA17_Chr1g0150801 51.389 72 34 1 205 276 89 159 3.25e-20 87.4
MsaG035394 MtrunA17_Chr7g0218081 43.333 90 46 2 190 275 378 466 6.63e-20 92.0
MsaG035394 MtrunA17_Chr7g0218081 53.448 58 25 2 218 275 228 283 1.15e-11 66.6
MsaG035394 MtrunA17_Chr5g0419241 50.000 76 34 1 171 246 34 105 7.55e-20 84.7
MsaG035394 MtrunA17_Chr7g0224801 46.914 81 40 2 209 289 86 163 2.31e-19 85.1
MsaG035394 MtrunA17_Chr7g0263531 51.948 77 34 2 206 280 349 424 2.41e-19 90.1
MsaG035394 MtrunA17_Chr7g0263531 52.381 63 27 3 213 275 185 244 2.22e-12 68.6
MsaG035394 MtrunA17_Chr4g0074001 50.000 80 39 1 196 275 337 415 3.21e-19 90.1
MsaG035394 MtrunA17_Chr5g0447701 52.113 71 33 1 205 275 239 308 3.87e-19 89.0
MsaG035394 MtrunA17_Chr4g0051881 47.619 84 39 2 205 284 165 247 4.18e-19 88.2
MsaG035394 MtrunA17_Chr1g0194481 51.389 72 34 1 205 276 145 215 5.12e-19 87.8
MsaG035394 MtrunA17_Chr4g0068541 41.346 104 57 3 202 303 192 293 5.36e-19 88.6
MsaG035394 MtrunA17_Chr7g0270051 50.000 74 34 1 218 291 53 123 6.76e-19 86.3
MsaG035394 MtrunA17_Chr5g0401821 54.412 68 29 1 213 280 196 261 1.56e-18 85.5
MsaG035394 MtrunA17_Chr4g0053281 57.627 59 25 0 219 277 267 325 2.19e-18 85.9
MsaG035394 MtrunA17_Chr1g0147881 47.561 82 35 2 203 278 243 322 6.83e-18 84.7
MsaG035394 MtrunA17_Chr5g0443131 46.914 81 42 1 205 285 144 223 1.29e-17 83.2
MsaG035394 MtrunA17_Chr5g0418781 41.748 103 54 2 202 299 108 209 1.39e-17 82.8
MsaG035394 MtrunA17_Chr8g0386241 40.909 88 48 3 197 284 85 168 2.08e-17 80.1
MsaG035394 MtrunA17_Chr8g0383251 40.449 89 50 2 205 291 95 182 2.92e-17 79.7
MsaG035394 MtrunA17_Chr1g0184691 56.140 57 25 0 219 275 294 350 3.14e-17 82.8
MsaG035394 MtrunA17_Chr7g0228941 45.238 84 38 2 198 275 28 109 3.20e-17 77.8
MsaG035394 MtrunA17_Chr8g0379461 48.000 75 38 1 208 282 67 140 4.14e-17 80.5
MsaG035394 MtrunA17_Chr7g0248721 50.000 72 34 2 205 276 128 197 6.39e-17 79.3
MsaG035394 MtrunA17_Chr2g0293481 46.667 75 40 0 219 293 268 342 7.04e-17 82.8
MsaG035394 MtrunA17_Chr8g0335811 47.887 71 36 1 205 275 141 210 9.06e-17 79.3
MsaG035394 MtrunA17_Chr1g0188941 54.237 59 26 1 217 275 50 107 9.36e-17 76.3
MsaG035394 MtrunA17_Chr3g0129361 47.887 71 36 1 205 275 131 200 1.80e-16 78.2
MsaG035394 MtrunA17_Chr3g0139021 48.235 85 33 3 203 278 295 377 2.21e-16 80.9
MsaG035394 MtrunA17_Chr4g0071521 43.678 87 41 2 203 283 226 310 2.58e-16 79.7
MsaG035394 MtrunA17_Chr7g0248691 40.659 91 51 1 201 288 134 224 6.40e-16 78.6
MsaG035394 MtrunA17_Chr3g0129321 46.479 71 37 1 205 275 105 174 6.81e-16 76.3
MsaG035394 MtrunA17_Chr8g0383351 52.381 63 29 1 213 275 155 216 8.10e-16 76.6
MsaG035394 MtrunA17_Chr8g0348311 40.659 91 51 1 201 288 135 225 9.04e-16 78.2
MsaG035394 MtrunA17_Chr2g0284321 53.448 58 27 0 218 275 35 92 1.04e-15 75.9
MsaG035394 MtrunA17_Chr2g0289181 50.877 57 28 0 219 275 15 71 1.63e-15 75.9
MsaG035394 MtrunA17_Chr2g0319961 44.304 79 44 0 209 287 71 149 1.94e-15 76.3
MsaG035394 MtrunA17_Chr7g0238921 29.545 220 110 8 205 406 110 302 2.01e-15 77.0
MsaG035394 MtrunA17_Chr8g0387501 42.466 73 42 0 216 288 127 199 1.35e-14 73.9
MsaG035394 MtrunA17_Chr6g0485431 48.649 74 36 2 205 277 141 213 6.21e-14 72.8
MsaG035394 MtrunA17_Chr1g0202461 41.304 92 49 2 189 275 227 318 4.24e-13 70.5
MsaG035394 MtrunA17_Chr5g0432071 48.276 58 28 2 218 275 104 159 7.55e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG035394 AT5G15130.1 47.525 303 130 7 8 292 10 301 2.70e-69 229
MsaG035394 AT5G15130.2 50.379 264 108 6 47 292 1 259 7.02e-67 222
MsaG035394 AT1G18860.1 41.697 271 137 5 27 277 29 298 2.25e-57 197
MsaG035394 AT1G68150.1 39.474 304 141 7 46 349 100 360 8.39e-56 189
MsaG035394 AT4G04450.2 40.794 277 135 8 36 295 11 275 1.01e-52 183
MsaG035394 AT4G04450.1 40.794 277 135 8 36 295 105 369 9.29e-52 182
MsaG035394 AT1G69810.1 38.433 268 149 6 33 292 19 278 2.07e-46 165
MsaG035394 AT4G01720.1 38.750 240 93 9 46 277 105 298 2.55e-41 153
MsaG035394 AT1G62300.1 38.750 240 110 7 45 277 162 371 1.22e-40 152
MsaG035394 AT4G22070.4 76.316 76 18 0 202 277 281 356 8.21e-38 144
MsaG035394 AT4G22070.3 76.316 76 18 0 202 277 281 356 8.21e-38 144
MsaG035394 AT4G22070.2 76.316 76 18 0 202 277 281 356 8.21e-38 144
MsaG035394 AT4G22070.1 76.316 76 18 0 202 277 281 356 8.21e-38 144
MsaG035394 AT1G69810.2 42.564 195 96 6 106 292 34 220 1.90e-36 137
MsaG035394 AT4G31800.1 41.085 129 70 2 216 339 174 301 1.23e-26 109
MsaG035394 AT4G31800.2 41.085 129 70 2 216 339 109 236 1.37e-26 107
MsaG035394 AT2G25000.2 38.462 130 74 2 211 339 95 219 3.15e-25 103
MsaG035394 AT2G25000.4 38.462 130 74 2 211 339 95 219 3.15e-25 103
MsaG035394 AT2G25000.1 38.462 130 74 2 211 339 138 262 4.06e-25 104
MsaG035394 AT2G25000.3 38.462 130 74 2 211 339 117 241 4.73e-25 103
MsaG035394 AT1G80840.1 53.333 75 35 0 203 277 131 205 8.30e-24 101
MsaG035394 AT2G38470.1 50.575 87 41 2 205 291 349 433 1.24e-22 100
MsaG035394 AT2G38470.1 51.724 58 26 2 219 276 185 240 2.51e-12 69.3
MsaG035394 AT1G29860.1 35.878 131 77 2 174 298 92 221 1.81e-22 97.1
MsaG035394 AT5G56270.1 57.746 71 29 1 205 275 474 543 3.41e-22 100
MsaG035394 AT5G56270.1 50.877 57 26 2 219 275 274 328 6.56e-11 65.1
MsaG035394 AT4G26640.5 47.253 91 46 2 194 283 180 269 1.58e-21 96.3
MsaG035394 AT4G26640.5 46.377 69 33 3 210 276 25 91 1.83e-11 65.9
MsaG035394 AT4G26640.6 47.253 91 46 2 194 283 180 269 1.58e-21 96.3
MsaG035394 AT4G26640.6 46.377 69 33 3 210 276 25 91 1.83e-11 65.9
MsaG035394 AT4G26640.4 47.253 91 46 2 194 283 180 269 1.58e-21 96.3
MsaG035394 AT4G26640.4 46.377 69 33 3 210 276 25 91 1.83e-11 65.9
MsaG035394 AT4G26640.3 47.253 91 46 2 194 283 180 269 1.58e-21 96.3
MsaG035394 AT4G26640.3 46.377 69 33 3 210 276 25 91 1.83e-11 65.9
MsaG035394 AT5G49520.1 49.367 79 39 1 202 280 205 282 2.38e-21 95.9
MsaG035394 AT5G41570.1 49.398 83 41 1 194 276 74 155 2.51e-21 91.3
MsaG035394 AT4G26640.1 47.253 91 46 2 194 283 284 373 3.29e-21 96.3
MsaG035394 AT4G26640.1 46.377 69 33 3 210 276 129 195 2.29e-11 66.2
MsaG035394 AT4G26640.7 47.253 91 46 2 194 283 316 405 3.59e-21 96.3
MsaG035394 AT4G26640.7 46.377 69 33 3 210 276 161 227 2.32e-11 66.2
MsaG035394 AT4G26640.2 47.253 91 46 2 194 283 356 445 4.18e-21 96.3
MsaG035394 AT4G26640.2 46.377 69 33 3 210 276 201 267 2.51e-11 66.2
MsaG035394 AT5G26170.1 34.667 150 77 4 142 275 25 169 4.93e-21 90.5
MsaG035394 AT1G13960.2 49.438 89 38 2 195 277 227 314 5.74e-21 94.4
MsaG035394 AT1G13960.2 53.448 58 25 2 218 275 76 131 2.08e-12 68.6
MsaG035394 AT2G04880.2 49.412 85 38 2 197 277 258 341 5.90e-21 95.5
MsaG035394 AT2G04880.2 51.667 60 27 2 217 276 110 167 8.56e-13 70.5
MsaG035394 AT1G13960.1 49.438 89 38 2 195 277 380 467 7.12e-21 95.5
MsaG035394 AT1G13960.1 53.448 58 25 2 218 275 229 284 1.40e-12 70.1
MsaG035394 AT2G04880.1 49.412 85 38 2 197 277 282 365 7.48e-21 95.1
MsaG035394 AT2G04880.1 51.667 60 27 2 217 276 110 167 1.00e-12 70.5
MsaG035394 AT2G46130.1 55.556 72 31 1 205 276 17 87 8.96e-21 87.4
MsaG035394 AT1G64000.1 52.778 72 33 1 205 276 101 171 1.09e-20 90.1
MsaG035394 AT1G29280.1 51.351 74 36 0 209 282 65 138 1.17e-20 91.7
MsaG035394 AT1G55600.1 45.977 87 42 2 194 276 279 364 1.53e-20 94.4
MsaG035394 AT5G13080.1 47.297 74 38 1 205 278 54 126 2.46e-20 87.4
MsaG035394 AT2G03340.1 53.521 71 32 1 205 275 402 471 3.18e-20 93.6
MsaG035394 AT2G03340.1 53.030 66 28 3 212 277 245 307 1.79e-13 72.8
MsaG035394 AT4G30935.1 41.379 116 61 2 200 309 313 427 7.92e-20 92.0
MsaG035394 AT3G01080.1 53.521 71 32 1 205 275 293 362 1.19e-19 91.3
MsaG035394 AT3G01080.2 53.521 71 32 1 205 275 331 400 1.20e-19 91.3
MsaG035394 AT4G18170.1 47.561 82 42 1 196 277 150 230 1.27e-19 89.7
MsaG035394 AT5G07100.2 50.649 77 37 1 201 277 124 199 1.80e-19 87.0
MsaG035394 AT5G07100.4 50.649 77 37 1 201 277 124 199 1.80e-19 87.0
MsaG035394 AT5G07100.5 50.649 77 37 1 201 277 124 199 1.80e-19 87.0
MsaG035394 AT5G07100.3 50.649 77 37 1 201 277 124 199 1.80e-19 87.0
MsaG035394 AT5G46350.1 43.182 88 49 1 205 292 170 256 2.05e-19 89.4
MsaG035394 AT2G23320.1 61.017 59 23 0 219 277 241 299 2.25e-19 89.0
MsaG035394 AT5G07100.1 52.000 75 35 1 201 275 217 290 2.84e-19 88.6
MsaG035394 AT2G47260.1 42.000 100 53 2 202 297 158 256 6.15e-19 88.2
MsaG035394 AT1G69310.4 51.351 74 35 1 202 275 131 203 8.84e-19 86.7
MsaG035394 AT1G69310.2 51.351 74 35 1 202 275 131 203 8.84e-19 86.7
MsaG035394 AT1G69310.1 51.351 74 35 1 202 275 131 203 8.84e-19 86.7
MsaG035394 AT2G30250.1 50.649 77 37 1 201 277 311 386 2.01e-18 87.0
MsaG035394 AT4G26440.1 52.113 71 33 1 205 275 359 428 2.41e-18 87.8
MsaG035394 AT5G64810.1 47.887 71 36 1 205 275 97 166 2.46e-18 83.2
MsaG035394 AT3G04670.1 55.385 65 28 1 223 287 267 330 3.56e-18 85.9
MsaG035394 AT2G30590.1 50.000 80 32 2 203 276 294 371 3.83e-18 86.3
MsaG035394 AT4G24240.1 52.239 67 32 0 218 284 281 347 9.53e-18 84.7
MsaG035394 AT5G28650.1 53.846 65 29 1 223 287 267 330 1.12e-17 84.3
MsaG035394 AT2G37260.2 58.065 62 25 1 216 277 265 325 1.66e-17 84.0
MsaG035394 AT2G37260.2 50.000 70 28 3 219 283 84 151 9.64e-13 69.7
MsaG035394 AT2G37260.3 58.065 62 25 1 216 277 267 327 1.78e-17 84.0
MsaG035394 AT2G37260.3 50.000 70 28 3 219 283 86 153 9.94e-13 69.7
MsaG035394 AT2G44745.1 49.296 71 35 1 205 275 132 201 1.88e-17 81.3
MsaG035394 AT2G37260.1 58.065 62 25 1 216 277 347 407 3.21e-17 84.0
MsaG035394 AT2G37260.1 54.386 57 24 2 219 275 166 220 1.31e-12 69.7
MsaG035394 AT4G31550.1 33.971 209 102 10 92 275 106 303 8.02e-17 81.6
MsaG035394 AT4G31550.2 33.654 208 103 9 92 275 106 302 8.09e-17 81.6
MsaG035394 AT2G24570.1 52.632 76 32 3 202 275 227 300 1.07e-16 81.3
MsaG035394 AT4G39410.1 40.000 95 56 1 205 299 210 303 1.17e-16 80.9
MsaG035394 AT3G62340.1 50.000 72 35 1 205 276 105 175 1.30e-16 80.1
MsaG035394 AT3G01970.1 46.479 71 37 1 205 275 52 121 1.57e-16 77.0
MsaG035394 AT1G30650.1 49.254 67 34 0 219 285 218 284 4.72e-16 80.5
MsaG035394 AT3G58710.1 55.000 60 27 0 218 277 71 130 8.02e-16 77.8
MsaG035394 AT2G46130.2 51.389 72 30 2 205 276 17 83 8.04e-16 73.6
MsaG035394 AT3G58710.2 55.000 60 27 0 218 277 70 129 8.06e-16 77.8
MsaG035394 AT2G34830.1 49.254 67 34 0 219 285 216 282 1.02e-15 79.3
MsaG035394 AT2G34830.2 49.254 67 34 0 219 285 225 291 1.15e-15 79.3
MsaG035394 AT4G01250.1 46.479 71 38 0 218 288 128 198 1.92e-15 77.0
MsaG035394 AT5G52830.1 48.571 70 36 0 219 288 166 235 6.71e-15 76.3
MsaG035394 AT2G21900.1 46.667 60 31 1 217 276 108 166 7.77e-15 73.6
MsaG035394 AT4G23550.1 42.857 77 44 0 217 293 139 215 1.42e-14 74.7
MsaG035394 AT4G31800.3 65.000 40 14 0 216 255 174 213 2.07e-14 73.2
MsaG035394 AT5G43290.1 47.222 72 36 2 205 275 100 170 6.58e-14 72.4
MsaG035394 AT1G69310.3 47.297 74 34 2 202 275 131 199 8.12e-14 72.0
MsaG035394 AT5G45050.1 44.118 68 38 0 218 285 1180 1247 9.77e-13 71.2
MsaG035394 AT5G45050.2 44.118 68 38 0 218 285 1152 1219 9.98e-13 70.9
MsaG035394 AT5G45050.4 44.776 67 37 0 219 285 1042 1108 1.12e-12 70.9
MsaG035394 AT5G24110.1 42.667 75 40 2 201 273 97 170 2.40e-12 67.8
MsaG035394 AT2G40740.1 50.847 59 27 1 218 274 173 231 2.98e-11 64.7
MsaG035394 AT1G66560.1 47.761 67 33 1 209 273 94 160 3.43e-11 63.9
MsaG035394 AT2G40740.3 51.724 58 26 1 218 273 182 239 4.05e-11 64.3

Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTTGTTGAATCAAAA+TGG 0.181145 7:+12669240 MsaT035394.1:CDS
TCTTTCTCTTTAGGTTTGTT+AGG 0.187408 7:-12667373 None:intergenic
TCCATATCTTCTTTCTCTTT+AGG 0.253785 7:-12667382 None:intergenic
GCTTCTTTCTTATACTCATT+TGG 0.300183 7:-12667334 None:intergenic
GTATATACCTGTTTCCTAAC+TGG 0.305967 7:-12668172 None:intergenic
ACATGTCATCAGCACATCTT+TGG 0.314882 7:-12668462 None:intergenic
AATTCTTCTGAGCTATTCAT+TGG 0.315815 7:-12667472 None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG 0.324758 7:+12667502 MsaT035394.1:CDS
GAAAATAGAGAGAATGGTTT+AGG 0.330212 7:+12669171 MsaT035394.1:CDS
GGATGTCAATGGAGGAAATA+TGG 0.344144 7:+12668082 MsaT035394.1:CDS
GCTGCAGTTTCGTCGATTGT+AGG 0.370957 7:+12669117 MsaT035394.1:CDS
AGAGAGAATGGTTTAGGTGC+AGG 0.371097 7:+12669177 MsaT035394.1:CDS
TCTTCAACTTCAACTTCCTT+TGG 0.371657 7:-12667496 None:intergenic
CTTTCTCTTTAGGTTTGTTA+GGG 0.381231 7:-12667372 None:intergenic
AACCCCTTCAAGGCAAGCTT+TGG 0.383268 7:+12669038 MsaT035394.1:CDS
TGGATTAGACTCTAAATATA+TGG 0.384134 7:+12667420 MsaT035394.1:CDS
CTGCTCTTAGAGACAGAAAA+TGG 0.396322 7:-12669351 None:intergenic
AGCAATCAACTTCAACTTCA+TGG 0.396953 7:-12666177 None:intergenic
ACCTAAAGAGAAAGAAGATA+TGG 0.399352 7:+12667381 MsaT035394.1:CDS
TCAGCCAAAGCTTGCCTTGA+AGG 0.406538 7:-12669042 None:intergenic
CAAGAAGAAAATAGAGAGAA+TGG 0.423211 7:+12669165 MsaT035394.1:CDS
GAGAGAATGGTTTAGGTGCA+GGG 0.431975 7:+12669178 MsaT035394.1:CDS
CAAGTTATCAAACCCCTTCA+AGG 0.448201 7:+12669028 MsaT035394.1:CDS
TAGAGTCTAATCCAAGACTT+AGG 0.454455 7:-12667411 None:intergenic
AAATTGTTTGAAACCATTTG+AGG 0.460922 7:-12669225 None:intergenic
CAGCCAAAGCTTGCCTTGAA+GGG 0.463069 7:-12669041 None:intergenic
TTGCACCAGCATGCCCAGTT+AGG 0.463809 7:+12668158 MsaT035394.1:CDS
ATGGAAGTTAACCTAAGTCT+TGG 0.464788 7:+12667400 MsaT035394.1:CDS
AGCATGCCCAGTTAGGAAAC+AGG 0.467255 7:+12668165 MsaT035394.1:CDS
CGATAGTATGCTCTTGGACA+TGG 0.469854 7:-12668127 None:intergenic
TTGATATTGTTAACAATGGA+TGG 0.469868 7:-12669387 None:intergenic
ACTTGGTGAGTATCCTCAAA+TGG 0.474336 7:+12669212 MsaT035394.1:CDS
TTGTTGAATCAAAATGGAAA+AGG 0.477286 7:+12669246 MsaT035394.1:CDS
TATGGACAAAAGATAGCAAA+AGG 0.482613 7:+12668100 MsaT035394.1:CDS
GTGCAACGATAGTATGCTCT+TGG 0.484000 7:-12668133 None:intergenic
GAGACAGAAAATGGCAATGA+AGG 0.505559 7:-12669342 None:intergenic
CAAACTAAAATGTGCTAATG+AGG 0.505687 7:+12667108 MsaT035394.1:CDS
AAATGGAAAAGGATGTTTGA+AGG 0.506495 7:+12669257 MsaT035394.1:CDS
ATCTTAATCACAACATATGA+AGG 0.508764 7:+12668487 MsaT035394.1:CDS
TGTTTCCTAACTGGGCATGC+TGG 0.511634 7:-12668163 None:intergenic
ACTCATTTGGACTTCTTCCA+AGG 0.530874 7:-12667321 None:intergenic
TTCAGCTGCAGCATCAATGA+TGG 0.531666 7:+12668561 MsaT035394.1:CDS
GCTATAACTGAGTGAAGACT+TGG 0.533345 7:-12669093 None:intergenic
GAGTTTGTGTCACTTTGCCT+TGG 0.535145 7:+12667304 MsaT035394.1:CDS
ATTGTTGATATTGTTAACAA+TGG 0.540285 7:-12669391 None:intergenic
AATGGAAAAGGATGTTTGAA+GGG 0.540904 7:+12669258 MsaT035394.1:CDS
GCAGGGTTGAATTTGAAACT+TGG 0.541526 7:+12669195 MsaT035394.1:CDS
AAAATGTGCTAATGAGGAGA+TGG 0.542633 7:+12667114 MsaT035394.1:CDS
TATATACCTGTTTCCTAACT+GGG 0.545205 7:-12668171 None:intergenic
TCTTTCAAACAGATGAATGA+TGG 0.549199 7:+12668061 MsaT035394.1:intron
TCTTCAATCTCTGAACTGCT+AGG 0.554571 7:-12666133 None:intergenic
CTCTAAATATATGGTACCAT+CGG 0.560748 7:+12667429 MsaT035394.1:CDS
AAGGCAAAGTGACACAAACT+CGG 0.562482 7:-12667302 None:intergenic
AGCCAAAGCTTGCCTTGAAG+GGG 0.565025 7:-12669040 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 7:+12668071 MsaT035394.1:intron
TGATTGCTCTACTGAACAAG+AGG 0.569404 7:+12666192 MsaT035394.1:CDS
TGTCAAAGAAACGAAGCTGA+AGG 0.576917 7:-12667204 None:intergenic
GCTGATGCTGTTACTTGAAG+AGG 0.585701 7:-12668523 None:intergenic
ATATTGTTAACAATGGATGG+AGG 0.596810 7:-12669384 None:intergenic
GTCAAAGAAACGAAGCTGAA+GGG 0.596848 7:-12667203 None:intergenic
TACTGAACAAGAGGTTACAA+AGG 0.612360 7:+12666201 MsaT035394.1:CDS
GGACAAGGATCAAACAATGG+TGG 0.624982 7:+12669138 MsaT035394.1:CDS
CTGATGCTGTTACTTGAAGA+GGG 0.633343 7:-12668522 None:intergenic
TCAAGTAACAGCATCAGCCA+TGG 0.634105 7:+12668528 MsaT035394.1:CDS
AAATGTGCTAATGAGGAGAT+GGG 0.639036 7:+12667115 MsaT035394.1:CDS
AGCTAAATGTGATACTCCCA+CGG 0.647058 7:+12667621 MsaT035394.1:CDS
AGGCAAAGTGACACAAACTC+GGG 0.648244 7:-12667301 None:intergenic
GTTTCGTCGATTGTAGGACA+AGG 0.650226 7:+12669123 MsaT035394.1:CDS
AGCTGAAGTTGTATATGCCA+TGG 0.650411 7:-12668545 None:intergenic
AAATCAGATACTAACTCCGA+TGG 0.660110 7:-12667445 None:intergenic
TAGCTCAGAAGAATTACCAA+AGG 0.660407 7:+12667480 MsaT035394.1:CDS
GTAGGACAAGGATCAAACAA+TGG 0.686881 7:+12669135 MsaT035394.1:CDS
TGAATGATGGATGTCAATGG+AGG 0.707535 7:+12668074 MsaT035394.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 12666115 12669443 12666115 ID=MsaG035394
Chr7 mRNA 12666115 12669443 12666115 ID=MsaT035394.1;Parent=MsaG035394
Chr7 exon 12666115 12666222 12666115 ID=MsaT035394.1.exon1;Parent=MsaT035394.1
Chr7 CDS 12666115 12666222 12666115 ID=cds.MsaT035394.1;Parent=MsaT035394.1
Chr7 exon 12667103 12667642 12667103 ID=MsaT035394.1.exon2;Parent=MsaT035394.1
Chr7 CDS 12667103 12667642 12667103 ID=cds.MsaT035394.1;Parent=MsaT035394.1
Chr7 exon 12668073 12668186 12668073 ID=MsaT035394.1.exon3;Parent=MsaT035394.1
Chr7 CDS 12668073 12668186 12668073 ID=cds.MsaT035394.1;Parent=MsaT035394.1
Chr7 exon 12668460 12668582 12668460 ID=MsaT035394.1.exon4;Parent=MsaT035394.1
Chr7 CDS 12668460 12668582 12668460 ID=cds.MsaT035394.1;Parent=MsaT035394.1
Chr7 exon 12668997 12669443 12668997 ID=MsaT035394.1.exon5;Parent=MsaT035394.1
Chr7 CDS 12668997 12669443 12668997 ID=cds.MsaT035394.1;Parent=MsaT035394.1
Gene Sequence

>MsaT035394.1

ATGTCAAAAATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAGGACAAACTAAAATGTGCTAATGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACGATGCTGTCACGAGTTGAAAAAGACTACAATTCCCTTCAGCTTCGTTTCTTTGACATTGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCGTCAACTAATTCACACGAAGAAATCGATGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTACCATCGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAATCACCCTCTTCAAGTAACAGCATCAGCCATGGCATATACAACTTCAGCTGCAGCATCAATGATGGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATCAAACCCCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCACTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGAGAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGAAAAGGATGTTTGAAGGGATCATACTTCAAAAGATTGTCACCAACAAGTTCACAAGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTCTCTAAGAGCAGTGCTAGTAAACCTCCATCCATTGTTAACAATATCAACAATTTTGATCTAGATAAGAACAAACATAATTAG

Protein sequence

>MsaT035394.1

MSKMSSPSSSEIEEKRVTSIIHEVEVDCSTEQEVTKEDKLKCANEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTNSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPSELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMENFYQNQNCMTSYQTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRENGLGAGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN*