Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035482 | XP_024641248.2 | 88.171 | 727 | 32 | 4 | 1 | 678 | 1 | 722 | 0.0 | 1288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035482 | sp|Q9SY66|FRS11_ARATH | 44.932 | 592 | 309 | 3 | 64 | 639 | 89 | 679 | 0.0 | 541 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035482 | tr|A0A396JX52|A0A396JX52_MEDTR | 88.171 | 727 | 32 | 4 | 1 | 678 | 1 | 722 | 0.0 | 1288 |
Gene ID | Type | Classification |
---|---|---|
MsaG035482 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035482 | MtrunA17_Chr1g0198761 | 88.171 | 727 | 32 | 4 | 1 | 678 | 1 | 722 | 0.0 | 1288 |
MsaG035482 | MtrunA17_Chr5g0431001 | 67.672 | 464 | 102 | 2 | 10 | 425 | 20 | 483 | 0.0 | 628 |
MsaG035482 | MtrunA17_Chr2g0276841 | 46.194 | 578 | 290 | 5 | 64 | 623 | 111 | 685 | 0.0 | 555 |
MsaG035482 | MtrunA17_Chr2g0294841 | 41.935 | 651 | 338 | 8 | 64 | 677 | 86 | 733 | 1.17e-177 | 529 |
MsaG035482 | MtrunA17_Chr2g0290391 | 45.805 | 596 | 283 | 7 | 55 | 619 | 80 | 666 | 9.85e-173 | 514 |
MsaG035482 | MtrunA17_Chr1g0202341 | 29.764 | 551 | 352 | 10 | 95 | 620 | 123 | 663 | 1.19e-72 | 251 |
MsaG035482 | MtrunA17_Chr5g0448761 | 29.779 | 544 | 343 | 10 | 64 | 575 | 100 | 636 | 1.36e-70 | 247 |
MsaG035482 | MtrunA17_Chr2g0296781 | 30.680 | 603 | 359 | 17 | 99 | 660 | 67 | 651 | 3.80e-68 | 239 |
MsaG035482 | MtrunA17_Chr2g0329031 | 27.553 | 519 | 331 | 10 | 69 | 563 | 59 | 556 | 3.98e-64 | 228 |
MsaG035482 | MtrunA17_Chr5g0441581 | 28.594 | 626 | 385 | 22 | 70 | 659 | 77 | 676 | 4.33e-64 | 227 |
MsaG035482 | MtrunA17_Chr6g0477261 | 31.397 | 551 | 323 | 15 | 151 | 660 | 4 | 540 | 4.46e-64 | 226 |
MsaG035482 | MtrunA17_Chr1g0203051 | 28.008 | 507 | 345 | 8 | 65 | 555 | 119 | 621 | 7.00e-63 | 223 |
MsaG035482 | MtrunA17_Chr3g0080351 | 28.650 | 548 | 320 | 15 | 69 | 577 | 121 | 636 | 1.27e-60 | 220 |
MsaG035482 | MtrunA17_Chr3g0082121 | 29.831 | 533 | 315 | 17 | 68 | 569 | 87 | 591 | 3.02e-58 | 211 |
MsaG035482 | MtrunA17_Chr8g0363841 | 28.922 | 529 | 329 | 14 | 68 | 565 | 62 | 574 | 9.93e-58 | 209 |
MsaG035482 | MtrunA17_Chr1g0196541 | 29.920 | 498 | 317 | 10 | 94 | 565 | 62 | 553 | 5.12e-57 | 208 |
MsaG035482 | MtrunA17_Chr2g0287651 | 28.488 | 516 | 343 | 10 | 68 | 563 | 118 | 627 | 1.15e-56 | 209 |
MsaG035482 | MtrunA17_Chr1g0207551 | 28.407 | 521 | 338 | 11 | 69 | 566 | 79 | 587 | 2.16e-56 | 207 |
MsaG035482 | MtrunA17_Chr5g0440451 | 25.478 | 628 | 384 | 15 | 68 | 638 | 87 | 687 | 3.41e-55 | 205 |
MsaG035482 | MtrunA17_Chr6g0458391 | 28.195 | 532 | 320 | 10 | 64 | 566 | 265 | 763 | 4.08e-55 | 203 |
MsaG035482 | MtrunA17_Chr5g0448511 | 31.688 | 385 | 228 | 5 | 206 | 563 | 16 | 392 | 8.08e-55 | 198 |
MsaG035482 | MtrunA17_Chr2g0324011 | 27.799 | 536 | 350 | 13 | 56 | 566 | 43 | 566 | 4.02e-53 | 194 |
MsaG035482 | MtrunA17_Chr3g0118611 | 29.717 | 424 | 272 | 7 | 160 | 563 | 79 | 496 | 1.36e-51 | 193 |
MsaG035482 | MtrunA17_Chr1g0203721 | 25.926 | 540 | 346 | 12 | 65 | 569 | 104 | 624 | 1.68e-49 | 188 |
MsaG035482 | MtrunA17_Chr2g0287061 | 27.068 | 532 | 322 | 12 | 61 | 571 | 220 | 706 | 2.66e-47 | 181 |
MsaG035482 | MtrunA17_Chr2g0291581 | 26.389 | 576 | 362 | 16 | 92 | 627 | 134 | 687 | 9.97e-47 | 177 |
MsaG035482 | MtrunA17_Chr3g0081281 | 79.570 | 93 | 19 | 0 | 166 | 258 | 1 | 93 | 1.66e-44 | 155 |
MsaG035482 | MtrunA17_Chr1g0164591 | 35.468 | 203 | 116 | 3 | 219 | 406 | 106 | 308 | 8.27e-37 | 141 |
MsaG035482 | MtrunA17_Chr2g0291591 | 22.961 | 466 | 302 | 12 | 87 | 516 | 122 | 566 | 3.44e-32 | 132 |
MsaG035482 | MtrunA17_Chr7g0258861 | 27.615 | 239 | 162 | 5 | 71 | 304 | 56 | 288 | 8.21e-21 | 94.0 |
MsaG035482 | MtrunA17_Chr5g0430921 | 64.912 | 57 | 20 | 0 | 622 | 678 | 1 | 57 | 5.85e-20 | 85.1 |
MsaG035482 | MtrunA17_Chr8g0359311 | 46.753 | 77 | 41 | 0 | 710 | 786 | 22 | 98 | 7.28e-18 | 79.7 |
MsaG035482 | MtrunA17_Chr7g0270401 | 44.156 | 77 | 43 | 0 | 710 | 786 | 195 | 271 | 5.58e-17 | 82.0 |
MsaG035482 | MtrunA17_Chr2g0308841 | 26.087 | 207 | 148 | 2 | 364 | 565 | 18 | 224 | 4.24e-16 | 79.3 |
MsaG035482 | MtrunA17_Chr1g0151111 | 42.683 | 82 | 47 | 0 | 707 | 788 | 19 | 100 | 5.69e-15 | 73.2 |
MsaG035482 | MtrunA17_Chr1g0178231 | 41.111 | 90 | 51 | 1 | 699 | 788 | 12 | 99 | 9.53e-15 | 72.0 |
MsaG035482 | MtrunA17_Chr1g0207921 | 39.560 | 91 | 55 | 0 | 696 | 786 | 107 | 197 | 4.35e-13 | 68.9 |
MsaG035482 | MtrunA17_Chr8g0361581 | 40.244 | 82 | 49 | 0 | 705 | 786 | 87 | 168 | 4.47e-12 | 65.1 |
MsaG035482 | MtrunA17_Chr1g0206471 | 37.838 | 74 | 46 | 0 | 710 | 783 | 196 | 269 | 6.97e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035482 | AT1G10240.2 | 44.932 | 592 | 309 | 3 | 64 | 639 | 89 | 679 | 0.0 | 541 |
MsaG035482 | AT1G10240.1 | 44.932 | 592 | 309 | 3 | 64 | 639 | 89 | 679 | 0.0 | 541 |
MsaG035482 | AT5G28530.3 | 43.845 | 593 | 293 | 6 | 58 | 620 | 88 | 670 | 4.08e-169 | 504 |
MsaG035482 | AT5G28530.2 | 43.845 | 593 | 293 | 6 | 58 | 620 | 88 | 670 | 4.08e-169 | 504 |
MsaG035482 | AT5G28530.1 | 43.845 | 593 | 297 | 6 | 58 | 620 | 88 | 674 | 4.40e-168 | 502 |
MsaG035482 | AT5G28530.5 | 39.623 | 583 | 269 | 8 | 58 | 620 | 88 | 607 | 1.63e-135 | 416 |
MsaG035482 | AT5G28530.4 | 39.623 | 583 | 273 | 8 | 58 | 620 | 88 | 611 | 1.00e-134 | 414 |
MsaG035482 | AT4G38180.1 | 30.153 | 524 | 335 | 8 | 64 | 563 | 113 | 629 | 3.66e-70 | 246 |
MsaG035482 | AT4G15090.1 | 29.895 | 475 | 303 | 6 | 116 | 566 | 139 | 607 | 1.01e-67 | 240 |
MsaG035482 | AT4G15090.5 | 29.895 | 475 | 303 | 6 | 116 | 566 | 139 | 607 | 1.01e-67 | 240 |
MsaG035482 | AT4G15090.3 | 29.895 | 475 | 303 | 6 | 116 | 566 | 139 | 607 | 1.01e-67 | 240 |
MsaG035482 | AT4G15090.2 | 29.895 | 475 | 303 | 6 | 116 | 566 | 139 | 607 | 1.01e-67 | 240 |
MsaG035482 | AT4G15090.4 | 29.895 | 475 | 303 | 6 | 116 | 566 | 139 | 607 | 1.01e-67 | 240 |
MsaG035482 | AT1G76320.3 | 27.052 | 536 | 342 | 12 | 69 | 580 | 42 | 552 | 5.35e-59 | 213 |
MsaG035482 | AT1G76320.2 | 26.779 | 534 | 346 | 11 | 69 | 580 | 42 | 552 | 1.16e-58 | 213 |
MsaG035482 | AT1G76320.1 | 26.779 | 534 | 346 | 11 | 69 | 580 | 42 | 552 | 1.33e-58 | 213 |
MsaG035482 | AT1G76320.4 | 26.779 | 534 | 346 | 11 | 69 | 580 | 42 | 552 | 1.33e-58 | 213 |
MsaG035482 | AT3G22170.2 | 25.321 | 545 | 317 | 13 | 69 | 566 | 115 | 616 | 1.19e-53 | 200 |
MsaG035482 | AT3G22170.1 | 25.321 | 545 | 317 | 13 | 69 | 566 | 115 | 616 | 1.19e-53 | 200 |
MsaG035482 | AT3G06250.2 | 27.660 | 517 | 308 | 12 | 65 | 563 | 231 | 699 | 9.48e-50 | 188 |
MsaG035482 | AT3G06250.1 | 27.660 | 517 | 308 | 12 | 65 | 563 | 231 | 699 | 9.48e-50 | 188 |
MsaG035482 | AT3G06250.3 | 27.660 | 517 | 308 | 12 | 65 | 563 | 231 | 699 | 9.48e-50 | 188 |
MsaG035482 | AT2G27110.2 | 25.919 | 544 | 350 | 13 | 64 | 585 | 85 | 597 | 1.16e-48 | 185 |
MsaG035482 | AT2G27110.1 | 25.919 | 544 | 350 | 13 | 64 | 585 | 85 | 597 | 1.16e-48 | 185 |
MsaG035482 | AT5G18960.2 | 27.413 | 518 | 311 | 13 | 65 | 563 | 252 | 723 | 4.80e-48 | 183 |
MsaG035482 | AT5G18960.1 | 27.413 | 518 | 311 | 13 | 65 | 563 | 252 | 723 | 4.80e-48 | 183 |
MsaG035482 | AT2G27110.3 | 27.711 | 415 | 272 | 8 | 193 | 585 | 44 | 452 | 6.47e-48 | 182 |
MsaG035482 | AT4G19990.1 | 26.266 | 533 | 317 | 13 | 69 | 566 | 9 | 500 | 2.40e-43 | 168 |
MsaG035482 | AT4G19990.3 | 26.266 | 533 | 317 | 13 | 69 | 566 | 66 | 557 | 4.89e-43 | 167 |
MsaG035482 | AT4G19990.4 | 26.266 | 533 | 317 | 13 | 69 | 566 | 66 | 557 | 4.89e-43 | 167 |
MsaG035482 | AT4G19990.5 | 26.266 | 533 | 317 | 13 | 69 | 566 | 66 | 557 | 5.42e-43 | 167 |
MsaG035482 | AT4G19990.7 | 26.266 | 533 | 317 | 13 | 69 | 566 | 80 | 571 | 5.68e-43 | 167 |
MsaG035482 | AT4G19990.6 | 26.266 | 533 | 317 | 13 | 69 | 566 | 66 | 557 | 6.44e-43 | 167 |
MsaG035482 | AT4G19990.2 | 26.266 | 533 | 317 | 13 | 69 | 566 | 66 | 557 | 6.44e-43 | 167 |
MsaG035482 | AT4G38170.1 | 26.522 | 460 | 296 | 8 | 205 | 637 | 20 | 464 | 1.85e-42 | 163 |
MsaG035482 | AT2G32250.5 | 25.333 | 375 | 260 | 4 | 213 | 568 | 180 | 553 | 8.30e-42 | 164 |
MsaG035482 | AT2G32250.8 | 25.333 | 375 | 260 | 4 | 213 | 568 | 139 | 512 | 1.25e-41 | 163 |
MsaG035482 | AT2G32250.6 | 25.401 | 374 | 259 | 4 | 213 | 567 | 180 | 552 | 1.37e-41 | 164 |
MsaG035482 | AT2G32250.1 | 25.401 | 374 | 259 | 4 | 213 | 567 | 180 | 552 | 1.37e-41 | 164 |
MsaG035482 | AT2G32250.3 | 25.401 | 374 | 259 | 4 | 213 | 567 | 180 | 552 | 1.37e-41 | 164 |
MsaG035482 | AT2G32250.2 | 25.401 | 374 | 259 | 4 | 213 | 567 | 180 | 552 | 1.38e-41 | 164 |
MsaG035482 | AT2G32250.4 | 25.401 | 374 | 259 | 4 | 213 | 567 | 180 | 552 | 1.38e-41 | 164 |
MsaG035482 | AT2G32250.7 | 25.333 | 375 | 260 | 4 | 213 | 568 | 139 | 512 | 1.46e-41 | 163 |
MsaG035482 | AT1G52520.1 | 26.190 | 588 | 367 | 18 | 90 | 640 | 146 | 703 | 4.80e-41 | 161 |
MsaG035482 | AT1G80010.1 | 23.321 | 536 | 326 | 16 | 87 | 566 | 153 | 659 | 5.94e-37 | 149 |
Find 127 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTCGCTTCGTCAATTT+TGG | 0.087673 | 7:+14680434 | MsaT035482.1:CDS |
ACAAATTGGAGCACATTATT+TGG | 0.097710 | 7:+14679840 | MsaT035482.1:CDS |
CGACATGCCGCTTGGTATTT+TGG | 0.131409 | 7:+14679943 | MsaT035482.1:CDS |
ATGATCAATTCCACATAATT+TGG | 0.158038 | 7:-14681402 | None:intergenic |
TTAATCATGTGACTAGATTT+TGG | 0.164848 | 7:-14681084 | None:intergenic |
CTCATGTTGAATCAACTTAA+AGG | 0.216965 | 7:-14680806 | None:intergenic |
AATCGATGAAAATAACAAAT+TGG | 0.277704 | 7:+14679826 | MsaT035482.1:CDS |
TTCCTTTACATGGGCTATAA+AGG | 0.281917 | 7:+14680033 | MsaT035482.1:CDS |
TAGAACACAACCAAAGAAAA+TGG | 0.288289 | 7:-14679990 | None:intergenic |
ACATTCAACTCATCATTATC+TGG | 0.288967 | 7:-14681282 | None:intergenic |
TACGAGGATTGTGGTACTTT+TGG | 0.294933 | 7:-14680729 | None:intergenic |
AATTTCTAGACATTGAATTA+AGG | 0.310730 | 7:-14681139 | None:intergenic |
CCAAAAGGATCAAGGCTAAA+AGG | 0.316490 | 7:+14681339 | MsaT035482.1:CDS |
GCGAATAGAGCAAGTAAATA+TGG | 0.328166 | 7:-14680420 | None:intergenic |
AAAGCAGCCTCCGTCACTTT+TGG | 0.329024 | 7:-14680896 | None:intergenic |
CAAATTGGAGCACATTATTT+GGG | 0.331042 | 7:+14679841 | MsaT035482.1:CDS |
ATAATGAAGTGGAAGGTAAA+AGG | 0.341694 | 7:+14679399 | MsaT035482.1:CDS |
GAGCACATTATTTGGGCATT+TGG | 0.347058 | 7:+14679848 | MsaT035482.1:CDS |
ATTCAATCTCAAAGTGGTAT+TGG | 0.353310 | 7:+14679722 | MsaT035482.1:CDS |
GTGGCTCCCTTGTTAAGTTT+AGG | 0.365380 | 7:+14681115 | MsaT035482.1:CDS |
TTAAATACCTTTCCTTCATA+AGG | 0.366785 | 7:-14679203 | None:intergenic |
TCATCGTATCTCGACCCTAA+TGG | 0.373310 | 7:-14680294 | None:intergenic |
CCATTCATTTCTTCCCTCAA+TGG | 0.375125 | 7:-14679057 | None:intergenic |
GAAATCAGTCAGACTTGTAT+TGG | 0.379332 | 7:-14680551 | None:intergenic |
TTTGCTGGAATGACTACAAC+TGG | 0.388310 | 7:+14680484 | MsaT035482.1:CDS |
CAAAATGCATGCTTTGTGTT+TGG | 0.392144 | 7:-14680228 | None:intergenic |
AGAAGATTCCTTCCTTTACA+TGG | 0.405041 | 7:+14680023 | MsaT035482.1:CDS |
GATGCGGCATGTTCCTCAAT+AGG | 0.414686 | 7:-14680766 | None:intergenic |
TCTCCGAAGTGTTCAAGATT+CGG | 0.418288 | 7:+14684097 | MsaT035482.1:CDS |
GATGATTCTGTTCCTTATGA+AGG | 0.424416 | 7:+14679191 | MsaT035482.1:CDS |
TAGACAGTAGCATTGTTTCC+AGG | 0.428950 | 7:-14684135 | None:intergenic |
CGGTTTGGTGTGCCATCTCC+TGG | 0.429352 | 7:+14684117 | MsaT035482.1:CDS |
ACCAAGTTGGTAACTTTGCC+AGG | 0.432753 | 7:-14680263 | None:intergenic |
AACAGAATCATCAATGTGAT+TGG | 0.434495 | 7:-14679180 | None:intergenic |
TGAGAGGGAATGGAAATTGA+TGG | 0.437961 | 7:+14680369 | MsaT035482.1:intron |
TTGGGCCCTAGCTTATTTGA+AGG | 0.438270 | 7:+14680453 | MsaT035482.1:CDS |
ACGGAGGCTGCTTTGTAAGT+TGG | 0.440353 | 7:+14680905 | MsaT035482.1:CDS |
AGTCTGTAACAATTAGGGTT+TGG | 0.443967 | 7:+14684163 | MsaT035482.1:CDS |
CAGTCGGAAGATAATCCATT+AGG | 0.454154 | 7:+14679320 | MsaT035482.1:CDS |
CCAAGTATCTTCCTCTTCGT+TGG | 0.454342 | 7:+14681040 | MsaT035482.1:CDS |
GTAACGATTTATTCGATAAG+TGG | 0.456829 | 7:-14679921 | None:intergenic |
GGGTTTGGTTGCACTTTGAT+CGG | 0.469986 | 7:+14684178 | MsaT035482.1:CDS |
TGAATCAACTTAAAGGCATA+AGG | 0.471446 | 7:-14680799 | None:intergenic |
TTGTCATGTTCCAAATTATG+TGG | 0.471704 | 7:+14681392 | MsaT035482.1:CDS |
TTGGTTGGGGTCGATAATCA+TGG | 0.477466 | 7:+14679962 | MsaT035482.1:CDS |
GAAGTGTTCAAGATTCGGTT+TGG | 0.477482 | 7:+14684102 | MsaT035482.1:CDS |
GAGATAATTATGTCCATTGA+GGG | 0.480622 | 7:+14679044 | None:intergenic |
TGAGTTATTAGATGATAAAG+AGG | 0.481430 | 7:+14679532 | MsaT035482.1:CDS |
GTTGGTGGGTGTTGATTCTA+CGG | 0.481982 | 7:+14681257 | MsaT035482.1:CDS |
AGAAGTCCTTCAAATAAGCT+AGG | 0.482445 | 7:-14680459 | None:intergenic |
TGGTTGTGGTGCTAAATTGT+TGG | 0.487405 | 7:+14679442 | MsaT035482.1:CDS |
ATTCGAGCATATGAAGCCTT+CGG | 0.487986 | 7:+14679878 | MsaT035482.1:CDS |
CAAATTCCTTGCAAGAACAA+TGG | 0.494565 | 7:-14680948 | None:intergenic |
TCCTGGCAAAGTTACCAACT+TGG | 0.495704 | 7:+14680262 | MsaT035482.1:CDS |
ATGTGATTGGCTTGAGGCAA+AGG | 0.498857 | 7:-14679167 | None:intergenic |
TGATCTGTAAGAATTGTTTG+TGG | 0.499648 | 7:-14680168 | None:intergenic |
GCCTGAAATCCAAGAAAAGT+TGG | 0.500285 | 7:+14681239 | MsaT035482.1:CDS |
CCAACGAAGAGGAAGATACT+TGG | 0.501458 | 7:-14681040 | None:intergenic |
TCAGACTTGTATTGGCTCCC+AGG | 0.503601 | 7:-14680543 | None:intergenic |
TTGAAAGGTCAGAGAATCAA+TGG | 0.506346 | 7:-14679129 | None:intergenic |
GAGTTTGTTTGTCATCGTGC+TGG | 0.506578 | 7:+14679356 | MsaT035482.1:CDS |
AAAACAAAAGGTCGACCAAA+AGG | 0.507451 | 7:+14681324 | MsaT035482.1:CDS |
GCTGGAATACTTCGATAAGC+AGG | 0.512358 | 7:-14679566 | None:intergenic |
CAGAAGTTGGTTGACGATTG+TGG | 0.514434 | 7:+14683979 | MsaT035482.1:CDS |
CTTTATCATCTAATAACTCA+TGG | 0.514899 | 7:-14679529 | None:intergenic |
GGATTCTACATGGCAGAAGT+TGG | 0.514924 | 7:+14683966 | MsaT035482.1:CDS |
CACTTTGATCGGAGTGGTGA+CGG | 0.515757 | 7:+14684189 | MsaT035482.1:CDS |
AGGAAGATACTTGGAAGGGA+GGG | 0.517778 | 7:-14681031 | None:intergenic |
AATCGTTACGACATGCCGCT+TGG | 0.519527 | 7:+14679935 | MsaT035482.1:CDS |
ATACGATCTTGATCAATAGC+TGG | 0.520246 | 7:-14679584 | None:intergenic |
TGAGATAATTATGTCCATTG+AGG | 0.520269 | 7:+14679043 | None:intergenic |
CCAATCCTGCAGTGTTCATA+CGG | 0.520598 | 7:-14684039 | None:intergenic |
TTTGTGAGCAGAATTTGGAC+AGG | 0.525956 | 7:+14683944 | MsaT035482.1:CDS |
ATCAATCCATTGTTCTTGCA+AGG | 0.526683 | 7:+14680942 | MsaT035482.1:CDS |
GTAGCATTGTTTCCAGGAGA+TGG | 0.531067 | 7:-14684129 | None:intergenic |
TATGAACACTGCAGGATTGG+TGG | 0.537072 | 7:+14684042 | MsaT035482.1:CDS |
TACCTTTATAGCCCATGTAA+AGG | 0.539233 | 7:-14680035 | None:intergenic |
AAGTGGAAGGTAAAAGGAAA+CGG | 0.542859 | 7:+14679405 | MsaT035482.1:CDS |
TTCTGTTCCTTATGAAGGAA+AGG | 0.547107 | 7:+14679196 | MsaT035482.1:CDS |
CCGTATGAACACTGCAGGAT+TGG | 0.549752 | 7:+14684039 | MsaT035482.1:CDS |
TTATTGTTAGATGTTGCTCA+AGG | 0.550090 | 7:+14683919 | MsaT035482.1:intron |
CGAAGAGGAAGATACTTGGA+AGG | 0.558742 | 7:-14681036 | None:intergenic |
CAAATCTATTAAGAATCAGT+CGG | 0.561407 | 7:+14679304 | MsaT035482.1:intron |
TCCATGTTGCGGCTCTTGAA+AGG | 0.562596 | 7:-14679144 | None:intergenic |
AAGGTCGACCAAAAGGATCA+AGG | 0.568587 | 7:+14681331 | MsaT035482.1:CDS |
GAAGATTCCTTCCTTTACAT+GGG | 0.569744 | 7:+14680024 | MsaT035482.1:CDS |
CCATTGAGGGAAGAAATGAA+TGG | 0.571591 | 7:+14679057 | MsaT035482.1:CDS |
CTGAACCGTATGAACACTGC+AGG | 0.574279 | 7:+14684034 | MsaT035482.1:CDS |
ATTTGGACAGGGATTCTACA+TGG | 0.576462 | 7:+14683956 | MsaT035482.1:CDS |
GTTAACATTAGAAATCAAGC+TGG | 0.579097 | 7:+14680688 | MsaT035482.1:CDS |
CGTAGACAAAGATAATGAAG+TGG | 0.583069 | 7:+14679388 | MsaT035482.1:CDS |
AATGGAAGAGAAAACCAAGT+TGG | 0.583280 | 7:-14680276 | None:intergenic |
TTTATAGCCCATGTAAAGGA+AGG | 0.583563 | 7:-14680031 | None:intergenic |
ACTGCAGGATTGGTGGAGAG+TGG | 0.592517 | 7:+14684049 | MsaT035482.1:CDS |
TTAAGGACCTAAACTTAACA+AGG | 0.597172 | 7:-14681122 | None:intergenic |
TGAGGCAAAGGTCCATGTTG+CGG | 0.597181 | 7:-14679155 | None:intergenic |
GACAAAGATAATGAAGTGGA+AGG | 0.597807 | 7:+14679392 | MsaT035482.1:CDS |
TGGAGAGTGGAAACGTTTCG+TGG | 0.597997 | 7:+14684062 | MsaT035482.1:CDS |
GAAGTCCTTCAAATAAGCTA+GGG | 0.599709 | 7:-14680458 | None:intergenic |
GAGGAAGATACTTGGAAGGG+AGG | 0.601334 | 7:-14681032 | None:intergenic |
ACCTTTCAAGAGCCGCAACA+TGG | 0.604499 | 7:+14679143 | MsaT035482.1:CDS |
CATTGAGGGAAGAAATGAAT+GGG | 0.606562 | 7:+14679058 | MsaT035482.1:CDS |
ATGTTCTAATACGAGGATTG+TGG | 0.629226 | 7:-14680738 | None:intergenic |
CGACATCATACCAAAAGTGA+CGG | 0.631042 | 7:+14680886 | MsaT035482.1:CDS |
AATGAAAGAAGCTATTGCAA+TGG | 0.632777 | 7:+14680200 | MsaT035482.1:CDS |
AATTTCATTCAATCTCAAAG+TGG | 0.633071 | 7:+14679716 | MsaT035482.1:CDS |
CACATGATTAACAACAATGG+TGG | 0.633540 | 7:+14681096 | MsaT035482.1:CDS |
AAACCGAATCTTGAACACTT+CGG | 0.634845 | 7:-14684100 | None:intergenic |
AAACGGAAGTCGTCAAGATG+TGG | 0.638263 | 7:+14679422 | MsaT035482.1:CDS |
TACTTATTAGGAGATTGAGA+AGG | 0.640164 | 7:-14681470 | None:intergenic |
TCATCAATGTGATTGGCTTG+AGG | 0.640180 | 7:-14679173 | None:intergenic |
GAAATCCAAGAAAAGTTGGT+GGG | 0.647977 | 7:+14681243 | MsaT035482.1:CDS |
TTGTGAGCAGAATTTGGACA+GGG | 0.648269 | 7:+14683945 | MsaT035482.1:CDS |
AAGTCGTCAAGATGTGGTTG+TGG | 0.648789 | 7:+14679428 | MsaT035482.1:CDS |
TGGTTGCACTTTGATCGGAG+TGG | 0.651736 | 7:+14684183 | MsaT035482.1:CDS |
TTTAGTATATGAAAATGATG+AGG | 0.651816 | 7:+14679106 | MsaT035482.1:CDS |
AGTCACATGATTAACAACAA+TGG | 0.669494 | 7:+14681093 | MsaT035482.1:CDS |
ACCCCAACCAAAATACCAAG+CGG | 0.669960 | 7:-14679950 | None:intergenic |
ATAAGGTGTAAGAATAGATG+CGG | 0.674460 | 7:-14680782 | None:intergenic |
GAAGAGGAAGATACTTGGAA+GGG | 0.674893 | 7:-14681035 | None:intergenic |
TGAAATCCAAGAAAAGTTGG+TGG | 0.677535 | 7:+14681242 | MsaT035482.1:CDS |
GTGGAATTGATCATGACTCG+AGG | 0.678599 | 7:+14681411 | MsaT035482.1:CDS |
AAAGGATCAAGGCTAAAAGG+AGG | 0.688106 | 7:+14681342 | MsaT035482.1:CDS |
GGAAAACATGTTCTAATACG+AGG | 0.689981 | 7:-14680745 | None:intergenic |
CATCATACCAAAAGTGACGG+AGG | 0.695262 | 7:+14680889 | MsaT035482.1:CDS |
TAAGGACCTAAACTTAACAA+GGG | 0.703331 | 7:-14681121 | None:intergenic |
TTTGGAACATGACAATGACG+AGG | 0.718775 | 7:-14681384 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 14679053 | 14684215 | 14679053 | ID=MsaG035482 |
Chr7 | mRNA | 14679053 | 14684215 | 14679053 | ID=MsaT035482.1;Parent=MsaG035482 |
Chr7 | exon | 14679053 | 14679217 | 14679053 | ID=MsaT035482.1.exon1;Parent=MsaT035482.1 |
Chr7 | CDS | 14679053 | 14679217 | 14679053 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Chr7 | exon | 14679317 | 14680054 | 14679317 | ID=MsaT035482.1.exon2;Parent=MsaT035482.1 |
Chr7 | CDS | 14679317 | 14680054 | 14679317 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Chr7 | exon | 14680138 | 14680328 | 14680138 | ID=MsaT035482.1.exon3;Parent=MsaT035482.1 |
Chr7 | CDS | 14680138 | 14680328 | 14680138 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Chr7 | exon | 14680375 | 14680582 | 14680375 | ID=MsaT035482.1.exon4;Parent=MsaT035482.1 |
Chr7 | CDS | 14680375 | 14680582 | 14680375 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Chr7 | exon | 14680676 | 14681489 | 14680676 | ID=MsaT035482.1.exon5;Parent=MsaT035482.1 |
Chr7 | CDS | 14680676 | 14681489 | 14680676 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Chr7 | exon | 14683929 | 14684215 | 14683929 | ID=MsaT035482.1.exon6;Parent=MsaT035482.1 |
Chr7 | CDS | 14683929 | 14684215 | 14683929 | ID=cds.MsaT035482.1;Parent=MsaT035482.1 |
Gene Sequence |
Protein sequence |