AlfalfaGEDB | MsaG035512

M. sativa ssp. caerulea / MsaG035512

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035512	AES77535.1	96.273	483	15	2	1	483	42	521	0.0	951

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035512	sp\|Q9ZQ70\|WRKY3_ARATH	55.405	444	140	16	55	481	110	512	1.12e-135	404

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035512	tr\|G7L345\|G7L345_MEDTR	96.273	483	15	2	1	483	42	521	0.0	951

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TFs/TRs:

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Gene ID	Type	Classification
MsaG035512	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006736	MsaG035512	0.808917	4.172314e-50	6.941416e-48
MsaG007541	MsaG035512	0.802214	1.047502e-48	1.489072e-46
MsaG018891	MsaG035512	0.804265	3.958020e-49	5.899360e-47
MsaG024157	MsaG035512	0.817988	4.318206e-52	9.010422e-50
MsaG024668	MsaG035512	0.810659	1.767683e-50	3.067552e-48
MsaG026448	MsaG035512	0.800941	1.904585e-48	2.630379e-46
MsaG029625	MsaG035512	0.820312	1.285063e-52	2.849842e-50
MsaG030226	MsaG035512	0.817064	6.957274e-52	1.417599e-49
MsaG035512	MsaG041572	0.803402	5.970311e-49	8.722274e-47
MsaG035512	MsaG041574	0.803633	5.349187e-49	7.856553e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035512	MtrunA17_Chr7g0218081	96.273	483	15	2	1	483	42	521	0.0	951
MsaG035512	MtrunA17_Chr5g0418191	48.560	486	147	12	1	481	45	432	2.88e-130	384
MsaG035512	MtrunA17_Chr4g0042831	47.179	390	129	12	103	481	65	388	9.90e-96	294
MsaG035512	MtrunA17_Chr7g0249311	50.662	302	114	7	185	453	176	475	8.05e-87	280
MsaG035512	MtrunA17_Chr5g0445311	39.294	453	211	9	55	465	29	459	6.99e-85	271
MsaG035512	MtrunA17_Chr3g0101131	51.786	280	109	5	168	439	223	484	7.58e-85	273
MsaG035512	MtrunA17_Chr3g0079691	50.329	304	111	8	186	452	278	578	2.10e-83	271
MsaG035512	MtrunA17_Chr3g0106491	41.562	397	183	9	68	438	60	433	8.10e-81	259
MsaG035512	MtrunA17_Chr7g0263531	49.104	279	121	4	173	446	174	436	8.53e-80	255
MsaG035512	MtrunA17_Chr7g0243891	51.111	270	88	5	185	444	213	448	5.07e-77	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035512	AT2G03340.1	55.405	444	140	16	55	481	110	512	1.13e-136	404
MsaG035512	AT1G13960.1	50.296	507	190	16	1	482	45	514	1.04e-132	394
MsaG035512	AT1G13960.2	52.261	398	141	12	97	482	1	361	1.10e-107	324
MsaG035512	AT3G01080.2	40.800	500	189	14	1	483	52	461	4.51e-91	285
MsaG035512	AT3G01080.1	52.961	304	96	8	184	483	163	423	1.45e-85	270
MsaG035512	AT4G26640.5	54.762	252	96	3	187	435	34	270	5.15e-81	256
MsaG035512	AT4G26640.5	55.072	69	28	2	368	434	33	100	1.05e-13	73.2
MsaG035512	AT4G26640.6	54.762	252	96	3	187	435	34	270	5.15e-81	256
MsaG035512	AT4G26640.6	55.072	69	28	2	368	434	33	100	1.05e-13	73.2
MsaG035512	AT4G26640.4	54.762	252	96	3	187	435	34	270	5.15e-81	256

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Find 130 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAAGGACTCAAACC+AGG	0.575799	7:+15214774	None:intergenic
AAAGTTGAGCGTGCACCTGA+CGG	0.592511	7:-15212433	MsaT035512.1:CDS
AACTCCATATCTTTAAGCAA+AGG	0.596983	7:+15209319	None:intergenic
AAGAAGCTGAGAGAAGGTGG+CGG	0.633346	7:+15214962	None:intergenic
AAGAAGTGAAGTTGATCTTT+TGG	0.241380	7:-15211621	MsaT035512.1:CDS
AAGCTTGAAACAAGTGTCAT+AGG	0.423831	7:+15214999	None:intergenic
AAGTCTGACTCAAACTCACA+AGG	0.672355	7:-15212298	MsaT035512.1:CDS
AATGCAGAGAATAAGGAAGA+GGG	0.624503	7:-15212142	MsaT035512.1:CDS
AATGTATACAGAGCCCCTTT+GGG	0.503601	7:-15212834	MsaT035512.1:intron
AATTGCTACTAGCTGTGTTG+TGG	0.558213	7:+15209383	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	15209258	15215018	15209258	ID=MsaG035512
Chr7	mRNA	15209258	15215018	15209258	ID=MsaT035512.1;Parent=MsaG035512
Chr7	exon	15209258	15209540	15209258	ID=MsaT035512.1.exon4;Parent=MsaT035512.1
Chr7	CDS	15209258	15209540	15209258	ID=cds.MsaT035512.1;Parent=MsaT035512.1
Chr7	exon	15211560	15211718	15211560	ID=MsaT035512.1.exon3;Parent=MsaT035512.1
Chr7	CDS	15211560	15211718	15211560	ID=cds.MsaT035512.1;Parent=MsaT035512.1
Chr7	exon	15212112	15212845	15212112	ID=MsaT035512.1.exon2;Parent=MsaT035512.1
Chr7	CDS	15212112	15212845	15212112	ID=cds.MsaT035512.1;Parent=MsaT035512.1
Chr7	exon	15214743	15215018	15214743	ID=MsaT035512.1.exon1;Parent=MsaT035512.1
Chr7	CDS	15214743	15215018	15214743	ID=cds.MsaT035512.1;Parent=MsaT035512.1

Gene Sequence

>MsaT035512.1

ATGACACTTGTTTCAAGCTTCTTTGCAACTGAATCCGCCACCTTCTCTCAGCTTCTTGCTGGTGCTATGGCTTCACCTCTTGCTTTCTCTTCATCTTCTTCCCTTGCTGGTGAATATAGTTATGGTGGTAAAGAGGATGATGGTGGGTCCCTTAATGGTGGGTTCAAACAGAGTAGGCCTATGAATTTGGTTATTGCTCGTTCTCCTGTTTTTACTGTTCCTCCTGGTTTGAGTCCTTCTGGTTTTCTTAACTCTCCTGGCTTTTTTTCACCTCAGAGCCCCTTTGGGATGTCACACCAACAGGCTTTAGCTCAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATAATATGCACATGCAACCTGAATACCAGCCGGTCTCATACGAAGCCCCCACTGAACGATTGGTAGAGCAGCCGTCTTATGCTCAAAATGAAGCTCCAGAGCAGCAAGTGGCAGCACCTGTATCAGAAGCTAGAATTGCTCAAATGGAAACATCAGAGATTGCATATTCTGATAAGAAATATCAACCATCTTCCCTACCTATTGACAAACCTGCAGATGACGGCTACAACTGGCGTAAGTATGGGCAAAAGCAGGTCAAAGGGAGCGAGTATCCACGGAGCTACTACAAATGCACACATCTGAATTGTCCAGTGAAGAAAAAAGTTGAGCGTGCACCTGACGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAGAAGCCTCTGGCGAATAGGCGGGTCAAAGAAAACAATAGTGACTTGAATGGAAATGCAAACGTTCAGCCTAAGTCTGACTCAAACTCACAAGGCTGGTTTGGAAATTCAAACAAAATTAGTGAGAGCGTCCCTGATTCTTCGCCGCCAGAGCCTGAGAGTGACCTGACATCCAATCAAGGGGCTATCAGACCACGACCTGGATCAAGTGAGAGTGAGGAAGTCGGTAATGCAGAGAATAAGGAAGAGGGAGTTGACTGTGAGCCAAACCCTAAGAGAAGGAGCACTGAACCGGCGGTTCCTGAAGTACCTCCATCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGATGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACTAGTGCAGGGTGCAACGTGCGTAAACATGTCGAGAGAGCATCAACGGACCCAAAAGCTGTCATAACTACGTATGAGGGAAAACATAATCATGATGTCCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGCAATTCAATGCCATCAAAACCACAGGCTTTGGTACCAGAGAAGCACCCTTTGCTTAAAGATATGGAGTTCGGAAACAATGACCAAAGACCTGTACATTTGCGCTTGAAAGAAGAGCAAATCATTGTATAA

Protein sequence

>MsaT035512.1

MTLVSSFFATESATFSQLLAGAMASPLAFSSSSSLAGEYSYGGKEDDGGSLNGGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQPVSYEAPTERLVEQPSYAQNEAPEQQVAAPVSEARIAQMETSEIAYSDKKYQPSSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPLANRRVKENNSDLNGNANVQPKSDSNSQGWFGNSNKISESVPDSSPPEPESDLTSNQGAIRPRPGSSESEEVGNAENKEEGVDCEPNPKRRSTEPAVPEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPSKPQALVPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV*