AlfalfaGEDB | MsaG035599

M. sativa ssp. caerulea / MsaG035599

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02257.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035599	XP_024626129.1	83.150	273	46	0	1	273	1	273	3.08e-153	438

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035599	sp\|Q9LFQ3\|SNL2_ARATH	37.975	158	94	3	93	250	46	199	3.27e-20	93.6
MsaG035599	sp\|Q9LFQ3\|SNL2_ARATH	35.948	153	94	3	14	166	53	201	2.89e-16	82.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035599	tr\|A0A396GZV2\|A0A396GZV2_MEDTR	83.150	273	46	0	1	273	1	273	1.47e-153	438

TFs/TRs:

Gene ID	Type	Classification
MsaG035599	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG035464	MsaG035599	0.831685	2.619639e-55	7.959329e-53
MsaG036006	MsaG035599	0.809348	3.376810e-50	5.676201e-48
MsaG036227	MsaG035599	0.859174	9.722741e-63	7.325740e-60
MsaG037035	MsaG035599	0.822023	5.205766e-53	1.207992e-50
MsaG035599	MsaG038134	0.843362	2.738191e-58	1.189562e-55
MsaG035599	MsaG036042	0.836676	1.489681e-56	5.247129e-54
MsaG035599	MsaG037828	0.892058	4.994631e-74	1.640383e-70
MsaG035599	MsaG039973	0.815115	1.887195e-51	3.658598e-49
MsaG035599	MsaG036601	0.849884	4.618758e-60	2.493142e-57

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035599	MtrunA17_Chr7g0218891	83.150	273	46	0	1	273	1	273	2.83e-157	438
MsaG035599	MtrunA17_Chr4g0075861	33.761	234	146	4	26	259	20	244	2.02e-32	122
MsaG035599	MtrunA17_Chr4g0075861	37.086	151	89	2	112	262	20	164	7.73e-25	102
MsaG035599	MtrunA17_Chr4g0075861	35.088	171	102	5	5	173	81	244	2.91e-18	83.6
MsaG035599	MtrunA17_Chr4g0075971	33.333	234	147	4	26	259	20	244	1.02e-29	117
MsaG035599	MtrunA17_Chr4g0075971	35.762	151	91	2	112	262	20	164	1.60e-22	96.7
MsaG035599	MtrunA17_Chr4g0075971	35.673	171	101	5	5	173	81	244	2.20e-17	81.6
MsaG035599	MtrunA17_Chr3g0077891	39.053	169	95	3	99	261	8	174	1.96e-27	104
MsaG035599	MtrunA17_Chr3g0077891	37.349	166	96	3	9	168	4	167	5.28e-24	95.5
MsaG035599	MtrunA17_Chr1g0206771	43.066	137	71	2	118	254	33	162	1.28e-25	99.8
MsaG035599	MtrunA17_Chr1g0206771	37.821	156	86	4	14	168	17	162	4.57e-21	87.8
MsaG035599	MtrunA17_Chr3g0077941	37.500	168	98	3	99	261	8	173	6.49e-24	95.1
MsaG035599	MtrunA17_Chr3g0077941	35.882	170	102	5	9	173	4	171	8.03e-20	84.3
MsaG035599	MtrunA17_Chr3g0077881	37.952	166	94	4	99	258	8	170	1.51e-23	94.4
MsaG035599	MtrunA17_Chr3g0077881	34.756	164	99	3	11	168	6	167	3.84e-19	82.4
MsaG035599	MtrunA17_Chr3g0077881	46.250	80	42	1	186	265	9	87	4.85e-14	68.6
MsaG035599	MtrunA17_Chr8g0364231	40.580	138	78	3	115	250	56	191	5.11e-23	98.6
MsaG035599	MtrunA17_Chr8g0364231	38.406	138	81	3	29	164	56	191	3.74e-19	87.4
MsaG035599	MtrunA17_Chr8g0364231	39.785	93	55	1	171	262	25	117	8.86e-14	71.2
MsaG035599	MtrunA17_Chr1g0205821	34.337	166	103	3	99	262	13	174	7.66e-23	92.4
MsaG035599	MtrunA17_Chr1g0205821	30.864	162	106	3	11	170	11	168	2.61e-17	77.8
MsaG035599	MtrunA17_Chr3g0077861	37.748	151	90	3	105	252	7	156	7.94e-23	92.0
MsaG035599	MtrunA17_Chr3g0077861	38.129	139	78	3	32	166	22	156	1.58e-19	83.2
MsaG035599	MtrunA17_Chr3g0077911	36.774	155	94	3	101	252	3	156	2.20e-22	90.9
MsaG035599	MtrunA17_Chr3g0077911	38.849	139	77	3	32	166	22	156	2.12e-21	88.2
MsaG035599	MtrunA17_Chr1g0205831	34.356	163	86	4	102	262	5	148	4.22e-21	87.8
MsaG035599	MtrunA17_Chr1g0205831	34.568	162	89	3	16	177	5	149	6.87e-21	87.4
MsaG035599	MtrunA17_Chr5g0415031	35.915	142	81	3	115	251	57	193	4.19e-19	87.0
MsaG035599	MtrunA17_Chr5g0415031	34.752	141	84	3	29	165	57	193	5.24e-16	77.8
MsaG035599	MtrunA17_Chr5g0415031	45.455	66	36	0	201	266	57	122	1.39e-11	64.7
MsaG035599	MtrunA17_Chr6g0452001	33.544	158	99	3	95	250	59	212	3.43e-18	84.3
MsaG035599	MtrunA17_Chr6g0452001	32.026	153	98	3	14	164	64	212	7.32e-15	74.7
MsaG035599	MtrunA17_Chr6g0452021	33.553	152	97	2	99	250	43	190	4.80e-18	83.6
MsaG035599	MtrunA17_Chr6g0452021	31.126	151	100	2	14	164	44	190	3.61e-15	75.1
MsaG035599	MtrunA17_Chr1g0205811	45.000	80	42	1	183	262	12	89	5.05e-14	67.4
MsaG035599	MtrunA17_Chr1g0205811	40.206	97	52	2	100	192	15	109	1.29e-12	63.5
MsaG035599	MtrunA17_Chr1g0205801	46.753	77	39	1	186	262	13	87	1.36e-13	65.9
MsaG035599	MtrunA17_Chr1g0205801	44.156	77	41	1	100	176	13	87	1.31e-12	63.2
MsaG035599	MtrunA17_Chr1g0205801	45.679	81	41	2	11	90	10	88	1.62e-12	62.8
MsaG035599	MtrunA17_Chr1g0206781	30.827	133	64	2	91	223	3	107	4.49e-13	64.7
MsaG035599	MtrunA17_Chr1g0206781	38.372	86	51	1	177	262	3	86	1.54e-12	63.2
MsaG035599	MtrunA17_Chr1g0206781	31.818	132	62	4	5	136	3	106	3.72e-12	62.0
MsaG035599	MtrunA17_Chr1g0205861	46.875	64	32	1	186	249	17	78	5.61e-11	58.9
MsaG035599	MtrunA17_Chr1g0205861	38.202	89	51	2	95	183	12	96	8.90e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035599	AT5G15020.2	37.975	158	94	3	93	250	46	199	3.25e-21	93.6
MsaG035599	AT5G15020.2	35.948	153	94	3	14	166	53	201	2.77e-17	82.0
MsaG035599	AT5G15020.1	37.975	158	94	3	93	250	46	199	3.32e-21	93.6
MsaG035599	AT5G15020.1	35.948	153	94	3	14	166	53	201	2.94e-17	82.0
MsaG035599	AT1G24190.2	37.037	162	96	5	91	250	6	163	5.82e-21	92.8
MsaG035599	AT1G24190.2	34.682	173	106	6	3	172	4	172	2.48e-18	85.1
MsaG035599	AT1G24190.2	41.975	81	45	1	186	266	15	93	4.60e-11	63.5
MsaG035599	AT1G24190.1	37.037	162	96	5	91	250	6	163	6.10e-21	92.8
MsaG035599	AT1G24190.1	34.682	173	106	6	3	172	4	172	2.75e-18	85.1
MsaG035599	AT1G24190.1	41.975	81	45	1	186	266	15	93	4.64e-11	63.5
MsaG035599	AT1G24190.3	37.037	162	96	5	91	250	6	163	6.65e-21	92.8
MsaG035599	AT1G24190.3	34.682	173	106	6	3	172	4	172	2.68e-18	85.1
MsaG035599	AT1G24190.3	41.975	81	45	1	186	266	15	93	4.44e-11	63.5
MsaG035599	AT1G70030.1	34.395	157	93	4	96	249	8	157	2.93e-20	85.5
MsaG035599	AT1G70030.1	35.762	151	91	3	14	163	12	157	8.91e-20	84.3
MsaG035599	AT1G70060.2	34.731	167	96	5	90	250	5	164	3.89e-19	87.4
MsaG035599	AT1G70060.2	33.333	165	103	4	3	164	4	164	2.09e-17	82.4
MsaG035599	AT1G70060.1	34.731	167	96	5	90	250	5	164	3.89e-19	87.4
MsaG035599	AT1G70060.1	33.333	165	103	4	3	164	4	164	2.09e-17	82.4
MsaG035599	AT3G01320.2	30.435	207	136	4	47	249	2	204	3.00e-18	85.1
MsaG035599	AT3G01320.2	29.911	224	144	6	14	232	58	273	4.85e-18	84.3
MsaG035599	AT3G01320.2	48.485	66	34	0	201	266	71	136	5.40e-12	66.2
MsaG035599	AT3G01320.1	30.435	207	136	4	47	249	2	204	3.27e-18	84.7
MsaG035599	AT3G01320.1	29.911	224	144	6	14	232	58	273	5.86e-18	84.0
MsaG035599	AT3G01320.1	48.485	66	34	0	201	266	71	136	5.56e-12	66.2
MsaG035599	AT1G24230.1	25.410	244	153	6	3	241	4	223	5.02e-18	81.6
MsaG035599	AT1G24230.1	26.347	167	107	4	95	261	10	160	5.76e-12	64.7
MsaG035599	AT1G59890.1	33.088	136	89	1	115	250	59	192	1.79e-17	82.8
MsaG035599	AT1G59890.1	32.836	134	88	1	31	164	61	192	2.23e-15	76.6
MsaG035599	AT1G59890.4	33.088	136	89	1	115	250	59	192	1.83e-17	82.8
MsaG035599	AT1G59890.4	32.836	134	88	1	31	164	61	192	2.40e-15	76.3
MsaG035599	AT1G59890.3	33.088	136	89	1	115	250	59	192	1.87e-17	82.8
MsaG035599	AT1G59890.3	32.836	134	88	1	31	164	61	192	2.49e-15	76.3
MsaG035599	AT1G59890.2	33.088	136	89	1	115	250	59	192	1.93e-17	82.4
MsaG035599	AT1G59890.2	32.836	134	88	1	31	164	61	192	2.66e-15	76.3
MsaG035599	AT1G10450.3	33.577	137	89	1	117	253	100	234	1.34e-16	80.1
MsaG035599	AT1G10450.3	31.410	156	104	2	31	186	100	252	2.09e-15	76.6
MsaG035599	AT1G10450.2	33.577	137	89	1	117	253	49	183	1.71e-16	79.7
MsaG035599	AT1G10450.2	31.410	156	104	2	31	186	49	201	2.62e-15	76.3
MsaG035599	AT1G10450.1	33.577	137	89	1	117	253	49	183	1.71e-16	79.7
MsaG035599	AT1G10450.1	31.410	156	104	2	31	186	49	201	2.62e-15	76.3
MsaG035599	AT1G24200.1	30.519	154	102	4	96	249	11	159	1.03e-13	68.6
MsaG035599	AT5G35610.1	42.647	68	39	0	201	268	24	91	4.28e-11	60.5
MsaG035599	AT1G70030.2	28.025	157	71	4	96	249	19	136	4.36e-11	60.1

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCCAATTTAACGTGAAAT+TGG	0.263604	7:+16937551	None:intergenic
GGACCAATTTCACGTTAAAT+TGG	0.283882	7:-16937554	MsaT035599.1:CDS
ATAGATTTATTCAAGTTAAC+AGG	0.306329	7:-16938601	MsaT035599.1:CDS
AACATCATTGACAAATTCTT+TGG	0.313079	7:+16937908	None:intergenic
AGTAGTTCAATCTTGATATA+AGG	0.348020	7:+16938006	None:intergenic
TAGAATTGATGATGCAAATC+TGG	0.365588	7:-16937677	MsaT035599.1:CDS
TAACTTTCTGAATGTCTTGA+AGG	0.368309	7:-16938200	MsaT035599.1:CDS
AGAACATTGTGACGTCAAAA+AGG	0.380889	7:-16938651	MsaT035599.1:CDS
ATCTGAGGAGGAACAATCTC+TGG	0.416325	7:-16938308	MsaT035599.1:CDS
AACTTCATTGACAAATTCCT+TGG	0.417950	7:+16938628	None:intergenic
TAACTTTCTGAATGTGTTGA+AGG	0.435901	7:-16937844	MsaT035599.1:CDS
AAGGGATTATTTGAAGGTCA+TGG	0.456386	7:-16938388	MsaT035599.1:CDS
AAATCTTGGTGAATTATTGA+AGG	0.463354	7:-16938051	MsaT035599.1:CDS
AGCTTGATTTCAAATCCATC+AGG	0.489510	7:+16938334	None:intergenic
AAATCTCAGTAAATTCTTGA+AGG	0.490603	7:-16938407	MsaT035599.1:CDS
TTCTTGAAGGGATTATTTGA+AGG	0.491097	7:-16938394	MsaT035599.1:CDS
AGGATTGACGCTGCAAATCT+TGG	0.492061	7:-16938065	MsaT035599.1:CDS
AGCTTGATTTCATATCCATC+AGG	0.493606	7:+16937589	None:intergenic
AATCTTGGTGAATTATTGAA+GGG	0.505800	7:-16938050	MsaT035599.1:CDS
AGCTTGATTTCAAATCCATC+GGG	0.513708	7:+16937978	None:intergenic
TTATTGAAGGGATTATTTCA+AGG	0.513778	7:-16938038	MsaT035599.1:CDS
ATAATGAAGAAAATATTTGA+AGG	0.513952	7:-16937649	MsaT035599.1:CDS
TTGAACTACTTCATGCCTGA+TGG	0.515459	7:-16938349	MsaT035599.1:CDS
AATCTCAGTAAATTCTTGAA+GGG	0.520509	7:-16938406	MsaT035599.1:CDS
TGAAATCAAGCTTCCATTGG+AGG	0.531076	7:-16937578	MsaT035599.1:CDS
AAGCTTGATTTCAAATCCAT+CGG	0.533316	7:+16937977	None:intergenic
AGAGATTCTTCCTCCTCCGA+TGG	0.538054	7:+16937954	None:intergenic
TGAAATTGGTCCTCCTCCAA+TGG	0.554062	7:+16937565	None:intergenic
TTAAACTACTTCCTACCTGA+TGG	0.558050	7:-16937604	MsaT035599.1:CDS
AATCAAGCTTCCATCGGAGG+AGG	0.577026	7:-16937964	MsaT035599.1:CDS
ATATGAAATCAAGCTTCCAT+TGG	0.577817	7:-16937581	MsaT035599.1:CDS
ATTTATTCAAGTTAATCAGA+GGG	0.582516	7:-16937877	MsaT035599.1:CDS
TGATGCATTACAAGAAACAA+AGG	0.583155	7:-16938547	MsaT035599.1:intron
TGAAATCAAGCTTCCATCGG+AGG	0.587204	7:-16937967	MsaT035599.1:CDS
GATTTATTCAAGTTAATCAG+AGG	0.587296	7:-16937878	MsaT035599.1:CDS
GATTTATTCAAGTTAATCAG+AGG	0.587296	7:-16938234	MsaT035599.1:CDS
TGAAATCAAGCTTCTATCTG+AGG	0.589635	7:-16938323	MsaT035599.1:CDS
ATTTATTCAAGTTAATCAGA+GGG	0.591574	7:-16938233	MsaT035599.1:CDS
GATTTATTCAAGTTAACAGG+AGG	0.594070	7:-16938598	MsaT035599.1:CDS
TGAAGGATTACAAGAGACAA+AGG	0.594478	7:-16937827	MsaT035599.1:intron
TTGAACTACTTAATGCCCGA+TGG	0.600196	7:-16937993	MsaT035599.1:CDS
AATCAAGCTTCCATTGGAGG+AGG	0.611644	7:-16937575	MsaT035599.1:CDS
GGGCAACCCGTGATAATGGA+AGG	0.616033	7:-16938683	None:intergenic
ATTTATTCAAGTTAACAGGA+GGG	0.617938	7:-16938597	MsaT035599.1:CDS
ATTTGAAATCAAGCTTCCAT+CGG	0.624462	7:-16937970	MsaT035599.1:CDS
TGATTTCATATCCATCAGGT+AGG	0.626891	7:+16937593	None:intergenic
AATCAAGCTTCTATCTGAGG+AGG	0.631110	7:-16938320	MsaT035599.1:CDS
TGAAGGATTACAAAACACAA+AGG	0.632152	7:-16938183	MsaT035599.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	16937534	16938690	16937534	ID=MsaG035599
Chr7	mRNA	16937534	16938690	16937534	ID=MsaT035599.1;Parent=MsaG035599
Chr7	exon	16937534	16937696	16937534	ID=MsaT035599.1.exon4;Parent=MsaT035599.1
Chr7	CDS	16937534	16937696	16937534	ID=cds.MsaT035599.1;Parent=MsaT035599.1
Chr7	exon	16937828	16938085	16937828	ID=MsaT035599.1.exon3;Parent=MsaT035599.1
Chr7	CDS	16937828	16938085	16937828	ID=cds.MsaT035599.1;Parent=MsaT035599.1
Chr7	exon	16938184	16938441	16938184	ID=MsaT035599.1.exon2;Parent=MsaT035599.1
Chr7	CDS	16938184	16938441	16938184	ID=cds.MsaT035599.1;Parent=MsaT035599.1
Chr7	exon	16938548	16938690	16938548	ID=MsaT035599.1.exon1;Parent=MsaT035599.1
Chr7	CDS	16938548	16938690	16938548	ID=cds.MsaT035599.1;Parent=MsaT035599.1

Gene Sequence

>MsaT035599.1

ATGGAAGGACATTCTCAAGAACATTGTGACGTCAAAAAGGCCAAGGAATTTGTCAATGAAGTTAAGCATAGATTTATTCAAGTTAACAGGAGGGATAAGTATGATGACTTTTTGAATGTCTTGATGCATTACAAGAAACAAAGGATCGATGATGCAAATCTCAGTAAATTCTTGAAGGGATTATTTGAAGGTCATGGAGATCTTATATCAAGATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTTCTATCTGAGGAGGAACAATCTCTGGAGCATTTTGTAGCCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTGAAGGATTACAAAACACAAAGGATTGACGCTGCAAATCTTGGTGAATTATTGAAGGGATTATTTCAAGGTCATAGAGACCTTATATCAAGATTGAACTACTTAATGCCCGATGGATTTGAAATCAAGCTTCCATCGGAGGAGGAAGAATCTCTTGAACATTCTGAAGAAAAAACTGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGAAAAGTATGTTAACTTTCTGAATGTGTTGAAGGATTACAAGAGACAAAGAATTGATGATGCAAATCTGGTTAAAATAATGAAGAAAATATTTGAAGGTCATAGCGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGACCAATTTCACGTTAAATTGGAAGATGCTACAAGTTCTTGA

Protein sequence

>MsaT035599.1

MEGHSQEHCDVKKAKEFVNEVKHRFIQVNRRDKYDDFLNVLMHYKKQRIDDANLSKFLKGLFEGHGDLISRLNYFMPDGFEIKLLSEEEQSLEHFVAKNAKEFVNDVKCRFIQVNQRDKYDNFLNVLKDYKTQRIDAANLGELLKGLFQGHRDLISRLNYLMPDGFEIKLPSEEEESLEHSEEKTAKEFVNDVKCRFIQVNQREKYVNFLNVLKDYKRQRIDDANLVKIMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEDQFHVKLEDATSS*