AlfalfaGEDB | MsaG035600

M. sativa ssp. caerulea / MsaG035600

KEGG: K11644
GO: -
PFAM: PF02671.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035600	AES77662.2	95.041	121	6	0	1	121	1	121	1.84e-76	241

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035600	sp\|O48686\|SNL3_ARATH	48.462	130	62	1	2	126	18	147	2.28e-33	134

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035600	tr\|G7L5B2\|G7L5B2_MEDTR	95.041	121	6	0	1	121	1	121	8.80e-77	241

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG035600	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG035600	0.870366	3.135702e-66	3.690005e-63
MsaG000325	MsaG035600	0.813048	5.368297e-51	9.881219e-49
MsaG000459	MsaG035600	0.838220	6.015316e-57	2.221233e-54
MsaG000634	MsaG035600	0.833235	1.086445e-55	3.453619e-53
MsaG000717	MsaG035600	0.858359	1.699499e-62	1.241971e-59
MsaG001026	MsaG035600	0.836786	1.396873e-56	4.936707e-54
MsaG001468	MsaG035600	0.810400	2.010017e-50	3.466218e-48
MsaG001551	MsaG035600	0.876193	3.527610e-68	5.350644e-65
MsaG001730	MsaG035600	0.857206	3.720228e-62	2.604346e-59
MsaG001807	MsaG035600	0.852156	1.063492e-60	6.211921e-58

Showing 1 to 10 of 355 entries

Previous1 2 3 4 5…36Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035600	MtrunA17_Chr7g0218911	94.382	89	5	0	1	89	1	89	7.26e-55	175
MsaG035600	MtrunA17_Chr6g0452001	42.308	156	75	4	2	150	67	214	2.09e-31	125
MsaG035600	MtrunA17_Chr8g0364231	45.161	124	63	1	2	120	46	169	1.77e-29	119
MsaG035600	MtrunA17_Chr5g0415031	43.077	130	69	1	2	126	47	176	8.77e-29	117
MsaG035600	MtrunA17_Chr6g0452021	41.176	153	79	4	2	150	47	192	1.77e-27	112
MsaG035600	MtrunA17_Chr1g0206771	38.889	126	68	2	2	120	20	143	2.27e-16	76.3
MsaG035600	MtrunA17_Chr1g0206781	53.846	65	30	0	2	66	15	79	3.23e-16	73.9
MsaG035600	MtrunA17_Chr7g0218901	88.571	35	4	0	87	121	1	35	4.12e-16	71.6
MsaG035600	MtrunA17_Chr1g0205861	43.077	65	37	0	2	66	20	84	2.27e-13	65.9
MsaG035600	MtrunA17_Chr1g0205811	46.269	67	36	0	2	68	18	84	3.73e-13	65.5

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035600	AT1G24190.3	48.462	130	62	1	2	126	18	147	2.01e-34	134
MsaG035600	AT1G24190.2	48.462	130	62	1	2	126	18	147	2.21e-34	134
MsaG035600	AT1G24190.1	48.462	130	62	1	2	126	18	147	2.32e-34	134
MsaG035600	AT1G59890.2	36.283	226	131	8	2	217	49	271	1.98e-33	131
MsaG035600	AT1G70060.2	44.079	152	70	3	2	145	18	162	2.59e-32	128
MsaG035600	AT1G70060.1	44.079	152	70	3	2	145	18	162	2.59e-32	128
MsaG035600	AT1G59890.3	31.183	279	177	7	2	270	49	322	1.06e-31	126
MsaG035600	AT1G59890.1	31.183	279	177	7	2	270	49	322	1.09e-31	126
MsaG035600	AT1G59890.4	31.183	279	177	7	2	270	49	322	1.21e-31	126
MsaG035600	AT5G15020.1	47.541	122	59	2	2	119	56	176	1.40e-29	120

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTTGTCTCTGATTT+TGG	0.115164	7:-16952679	MsaT035600.1:CDS
AAAACGATTCATAAACCTGA+GGG	0.569217	7:+16955194	None:intergenic
AAACGACCATAAGAGTGTTA+AGG	0.472625	7:-16955149	MsaT035600.1:CDS
AATTAGTACATGTTTAGGAG+GGG	0.587381	7:+16950117	None:intergenic
AATTGATCTGGAGGGTGTGG+TGG	0.629593	7:-16955821	MsaT035600.1:CDS
ACCTCAAAGTGGTTGTTGTT+TGG	0.313532	7:+16952622	None:intergenic
ACTTTGAGGTTATGGTTGAA+AGG	0.539732	7:-16952609	MsaT035600.1:CDS
AGATTAGCAATTAGTGCAGG+GGG	0.595212	7:+16949803	None:intergenic
AGATTAGCAATTAGTGTAGG+GGG	0.566546	7:+16949956	None:intergenic
AGTGAGATTTCAAATCCATC+TGG	0.524903	7:+16955736	None:intergenic

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	16948428	16956031	16948428	ID=MsaG035600
Chr7	mRNA	16948428	16956031	16948428	ID=MsaT035600.1;Parent=MsaG035600
Chr7	exon	16948428	16948492	16948428	ID=MsaT035600.1.exon6;Parent=MsaT035600.1
Chr7	CDS	16948428	16948492	16948428	ID=cds.MsaT035600.1;Parent=MsaT035600.1
Chr7	exon	16949681	16950145	16949681	ID=MsaT035600.1.exon5;Parent=MsaT035600.1
Chr7	CDS	16949681	16950145	16949681	ID=cds.MsaT035600.1;Parent=MsaT035600.1
Chr7	exon	16952602	16952719	16952602	ID=MsaT035600.1.exon4;Parent=MsaT035600.1
Chr7	CDS	16952602	16952719	16952602	ID=cds.MsaT035600.1;Parent=MsaT035600.1
Chr7	exon	16955135	16955233	16955135	ID=MsaT035600.1.exon3;Parent=MsaT035600.1
Chr7	CDS	16955135	16955233	16955135	ID=cds.MsaT035600.1;Parent=MsaT035600.1
Chr7	exon	16955672	16955843	16955672	ID=MsaT035600.1.exon2;Parent=MsaT035600.1
Chr7	CDS	16955672	16955843	16955672	ID=cds.MsaT035600.1;Parent=MsaT035600.1
Chr7	exon	16955940	16956031	16955940	ID=MsaT035600.1.exon1;Parent=MsaT035600.1
Chr7	CDS	16955940	16956031	16955940	ID=cds.MsaT035600.1;Parent=MsaT035600.1

Gene Sequence

>MsaT035600.1

ATGTATCTCAATGAAATAAAGGATGCTTTTAAAGATGAGAAGCATAAGTATTATGAATTTTTAAGAGTCTTGAAAGATTTCGAGAAACGAAGAATTGATCTGGAGGGTGTGGTGGCAAGAGTGAAGGAATTTTTTCAAGGGCATGATGAATTGTTATTGAAATTTCAAACCTTTTTGCCAGATGGATTTGAAATCTCACTTCCACCAAAGAAACCAAAAGTGATCACTAAAGAATATGCTTTGAAATATGTATGCAAGGTGAAGACTCGATTTCGACGTAACCCTCAGGTTTATGAATCGTTTTTAGACATAATGCAAATGTATAAAAACGACCATAAGAGTGTTAAGGAGCTCCACCAAACGGGTGCACTTATGTTGCCAAAAACCTTTGTCTCTGATTTTGGTGCATCACTAGGTGATTACGCCACTTTTGTCGACCCAAACAACAACCACTTTGAGGTTATGGTTGAAAGGAATCGTGCAATTTCCCCTCCTAAACATGTACTAATTGCTAATCTAATCTCATCCGTTCATACTCTATTTTCACACTTGATCACACCCGTTGATTCAAACTCTAAAAATGTTCTCTCATATAACTTAGTTAATGCAATTGAAGACGTATTAAATGCTAATCAAGTCGGTCAACAACCCCCTACACTAATTGCTAATCTAATTTCACCCGTTCAAACTCTATTTTCACACTTGATCACACTCGTTGATTCAAACTCTGAAAATGTTCTCTCATATAACTTAGTTAATGCAATTGAAGACGTATTAAATGCTAATCAAGTCGGTCAACAACCCCCTGCACTAATTGCTAATCTAATTTCACCCGTTCAAACTCTATTTTCACACTTGATCACACCTGTTGATTCAAACTCTGAAAATGTTCTCTCATATAACTTAGTTAATGCAATTGAAGACGTATTAAATGCTAATCAAGTCGATCCATTGGATCCAATTACGATCAAAATTGTCCGTGTGAAGGTTGAGTCCATCAAACAAAATTGA

Protein sequence

>MsaT035600.1

MYLNEIKDAFKDEKHKYYEFLRVLKDFEKRRIDLEGVVARVKEFFQGHDELLLKFQTFLPDGFEISLPPKKPKVITKEYALKYVCKVKTRFRRNPQVYESFLDIMQMYKNDHKSVKELHQTGALMLPKTFVSDFGASLGDYATFVDPNNNHFEVMVERNRAISPPKHVLIANLISSVHTLFSHLITPVDSNSKNVLSYNLVNAIEDVLNANQVGQQPPTLIANLISPVQTLFSHLITLVDSNSENVLSYNLVNAIEDVLNANQVGQQPPALIANLISPVQTLFSHLITPVDSNSENVLSYNLVNAIEDVLNANQVDPLDPITIKIVRVKVESIKQN*