AlfalfaGEDB | MsaG035661

M. sativa ssp. caerulea / MsaG035661

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035661	XP_024626032.2	72.868	258	57	5	1	249	1	254	7.10e-99	336
MsaG035661	XP_024626032.2	75.234	642	129	9	138	767	256	879	0.0	924

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035661	sp\|Q9SCZ4\|FERON_ARATH	50.615	488	203	10	250	707	344	823	4.16e-141	440
MsaG035661	sp\|Q9SCZ4\|FERON_ARATH	35.470	234	129	11	22	249	25	242	2.26e-19	97.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035661	tr\|A0A072U779\|A0A072U779_MEDTR	72.868	258	57	5	1	249	1	254	2.76e-99	335
MsaG035661	tr\|A0A072U779\|A0A072U779_MEDTR	78.276	580	101	8	155	722	268	834	0.0	866

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035661	MtrunA17_Chr7g0219651	78.203	523	103	8	250	767	1352	1868	0.0	816
MsaG035661	MtrunA17_Chr7g0219651	71.589	535	105	8	251	764	367	875	0.0	740
MsaG035661	MtrunA17_Chr7g0219651	63.529	255	81	6	3	249	6	256	3.78e-81	284
MsaG035661	MtrunA17_Chr7g0219651	52.290	262	105	11	1	249	996	1250	6.51e-59	218
MsaG035661	MtrunA17_Chr7g0219571	65.263	665	194	13	121	767	238	883	0.0	816
MsaG035661	MtrunA17_Chr7g0219571	56.140	228	84	8	33	249	39	261	8.83e-56	206
MsaG035661	MtrunA17_Chr4g0025961	61.357	678	219	15	114	767	227	885	0.0	773
MsaG035661	MtrunA17_Chr4g0025961	55.118	254	92	10	8	249	11	254	3.58e-66	236
MsaG035661	MtrunA17_Chr7g0219601	72.659	534	110	9	250	767	363	876	0.0	753
MsaG035661	MtrunA17_Chr7g0219601	65.759	257	73	6	1	249	1	250	3.80e-84	286

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035661	AT3G51550.1	50.615	488	203	10	250	707	344	823	4.22e-142	440
MsaG035661	AT3G51550.1	35.470	234	129	11	22	249	25	242	2.30e-20	97.1
MsaG035661	AT5G28680.1	47.046	474	222	10	258	708	341	808	7.91e-128	402
MsaG035661	AT5G28680.1	27.668	253	145	11	9	249	4	230	1.02e-11	69.3
MsaG035661	AT5G28680.2	47.046	474	222	10	258	708	341	808	7.91e-128	402
MsaG035661	AT5G28680.2	27.668	253	145	11	9	249	4	230	1.02e-11	69.3
MsaG035661	AT3G04690.1	47.403	462	213	8	258	697	340	793	1.10e-127	401
MsaG035661	AT3G04690.1	29.508	244	143	9	10	249	11	229	1.41e-13	75.1
MsaG035661	AT5G39000.1	47.537	467	220	10	250	697	339	799	1.23e-126	399
MsaG035661	AT5G39000.1	33.484	221	124	9	26	239	25	229	1.96e-17	87.8

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Find 169 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTCATCGGTGTTGGA+GGG	0.594494	7:-18414661	MsaT035661.1:CDS
AAAACTTCAACCCTTCTCTT+TGG	0.302563	7:-18415807	MsaT035661.1:CDS
AAAAGGCGGATGTGATAAGG+TGG	0.546839	7:-18415159	MsaT035661.1:CDS
AAACGTGCGGTTGTGAATGG+AGG	0.603825	7:+18415985	None:intergenic
AAAGAGCACCAACATATTGT+TGG	0.435226	7:-18414294	MsaT035661.1:CDS
AAAGGCGGATGTGATAAGGT+GGG	0.532252	7:-18415158	MsaT035661.1:CDS
AAAGTGAGTATGTAAAATGA+AGG	0.531106	7:+18415899	None:intergenic
AAATCTGATGTGTACTCATT+CGG	0.473577	7:-18414125	MsaT035661.1:CDS
AAATGAAGGCGAAGATATAC+AGG	0.400472	7:+18415913	None:intergenic
AAATTGGGAATCAAAGAACA+CGG	0.681680	7:-18413680	MsaT035661.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	18413644	18416247	18413644	ID=MsaG035661
Chr7	mRNA	18413644	18416247	18413644	ID=MsaT035661.1;Parent=MsaG035661
Chr7	exon	18413644	18415199	18413644	ID=MsaT035661.1.exon2;Parent=MsaT035661.1
Chr7	CDS	18413644	18415199	18413644	ID=cds.MsaT035661.1;Parent=MsaT035661.1
Chr7	exon	18415500	18416247	18415500	ID=MsaT035661.1.exon1;Parent=MsaT035661.1
Chr7	CDS	18415500	18416247	18415500	ID=cds.MsaT035661.1;Parent=MsaT035661.1

Gene Sequence

>MsaT035661.1

ATGGCAAACACCAAAAATCATACAAAAATCACCATACTATCTCTCTTTTTGCTATTGTTCCCTGTAGTTGCTTACTCATACAACCCTGATTACAATTTAGCCATCGATTGTGGCTCCTCAACAAACACTACTGCCTCTGATAATCGAATTTGGATTGGTGAGAATATTGATAGCAAAAAACTCTTTTCAATCATTGGTGTATCAAGAACAACACCTAATTCCCTCTCAAATACTCAAATTCCTCCATTCACAACCGCACGTTTCTCTATCAAAAATTTTACATACTCACTTTCTAGCATCACCACCAAATCCCCTGTATATCTTCGCCTTCATTTTACATACTCACTTTCTTCTTATCAAAATTTTGAACCTTCAAATGCAATTTTCTCTGTCAAAGTGAACGAGCTTACCCTTCTTAAAAACTTCAACCCTTCTCTTTGGCTCTATTATGATGACGAAAAAATCACCAAAGAATATTGCATCCAAATCAAACCAAATGAGAACCTAAACATAACTTTCATTCCTAACACCATAAACCAATCAAATCCTTATTATGCTTTTATTAACGGAATCGAACTTGTGTCTATGCCTTCTTATCTCTATTACACAAACCTCACTGACCCAAATTACAATCTCAAACCAGTTGACTCAGAATACACGGGATACCATATTCTTAACGACAAAGCTTTAGAGATGGTTTATAGAGTCAACGTTGGTGATATTCAAGTTCCACCAGACCAAGATACGGATAACACTTTGGTTGAGGAAAAGGCGGATGTGATAAGGTGGGGTGGTGCTCGTATGGTTCCTGTTCATAAGGATTATGTTGTGTCTATGGAGGGATTAATCTCACAAATTGAAAGAGTTTATCTTTCAATCAAGCTACAACGAGCACCAGAAAGTATCATCACAAAATACCGTGATGTCATATTGAATGGAATTGAGATTTTCAAAGTTAGTGATAAATATAACAATCTCGCTGGTTTGAATCCCAACAAACACATTATACTATCATCTCAAAAACAAAAATCAAAGTCCAAGAAGTCAACCACAGTCATAGTTGGAGTTTCATCTCTCTTGCTCACATTTCTTGTTGTGGGAATAATAGTTTTAGTTAGAAGGACAAGAAAATTTGAATCTCCTATTAAAATGAAACAAAGTTTGTGGAAAACAAAGAAAGAAGGTTCGTCAACTTTACCATCCTATTTGTGCCGCTACTTTACAATCGCGGAGATCAGAGCAGCCACAAAAAACTTCAATGATGAAAACGTCATCGGTGTTGGAGGGTTTGGCAATGTGTACAAAGGTTTCATCGATGGATCCACACCCGTTGCGATAAAATGCCTCAGGTCGGGCTCTCAACAAGGTGCCAATGAGTTCATGAACGAGATCGAGTTGCTCTCCCAGCTTCGCCACATTCACTTGGTATCCCTTGTGGGATATTGCAATGACAAGACAGAGATGATTCTGGTCTACGAGTTCATGCAGCATGGTACTCTCTGCGAGTATCTTTATGGTTCTAATAACCAGCCCCTACCATGGAAGCAGAGGCTTGAAATTCTTTTGGGTGCAGCGAGAGGGCTGAATTATCTTCATACTGAGGTGAAGAACAAGATAATACATCGTGAAGTAAAGAGCACCAACATATTGTTGGATGAGAAATGGATAGCTAAGGTTTCTGATTTCGGGTTATCCAAGGTGGGACCGACAGGGATATCGACTACCCACGTCAGCACGATGGTGAAGGGAAGCTTGGGGTATTTAGATCCTGAGTACTATATGTTCCAAAGGCTTACTCTTAAATCTGATGTGTACTCATTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTAGGCCACCATTGATTCGCGATTTGGATAAGAACACAGCTAGTCTAGTTTGTTGGTTTAAAAGATGCTATGATGAAGGTGTGGCGATTGAACAAATAGTGGATCCATCCCTAAAAGATTCTATCGCAGATGAGTGTTTGGAATATTATTGCAAGTTGGCGTTAAGTTGTTTGCATGATGATGGGACTCAACGACCTTCAATGAGTCAAGTGGTTGGGGGTTTAGAGTTTGCGTTGCAATTGGTGGTGAGTGAGGAAGATAGTCAGTTTGGTACGACCCAAAAAGAGAGGACATATATGAGTGATGAATCGAATGACTTGCATTTCACGAGATCGCACACCTACAAGGAGAGTACTGTCTCGGCGAGGCCAAGTACTCAAGAACAACCATTCTTTGAAATTGGGAATCAAAGAACACGGTCGTATTCATGCCAAAACTTCAAAACTTATATGTAG

Protein sequence

>MsaT035661.1

MANTKNHTKITILSLFLLLFPVVAYSYNPDYNLAIDCGSSTNTTASDNRIWIGENIDSKKLFSIIGVSRTTPNSLSNTQIPPFTTARFSIKNFTYSLSSITTKSPVYLRLHFTYSLSSYQNFEPSNAIFSVKVNELTLLKNFNPSLWLYYDDEKITKEYCIQIKPNENLNITFIPNTINQSNPYYAFINGIELVSMPSYLYYTNLTDPNYNLKPVDSEYTGYHILNDKALEMVYRVNVGDIQVPPDQDTDNTLVEEKADVIRWGGARMVPVHKDYVVSMEGLISQIERVYLSIKLQRAPESIITKYRDVILNGIEIFKVSDKYNNLAGLNPNKHIILSSQKQKSKSKKSTTVIVGVSSLLLTFLVVGIIVLVRRTRKFESPIKMKQSLWKTKKEGSSTLPSYLCRYFTIAEIRAATKNFNDENVIGVGGFGNVYKGFIDGSTPVAIKCLRSGSQQGANEFMNEIELLSQLRHIHLVSLVGYCNDKTEMILVYEFMQHGTLCEYLYGSNNQPLPWKQRLEILLGAARGLNYLHTEVKNKIIHREVKSTNILLDEKWIAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLCARPPLIRDLDKNTASLVCWFKRCYDEGVAIEQIVDPSLKDSIADECLEYYCKLALSCLHDDGTQRPSMSQVVGGLEFALQLVVSEEDSQFGTTQKERTYMSDESNDLHFTRSHTYKESTVSARPSTQEQPFFEIGNQRTRSYSCQNFKTYM*