AlfalfaGEDB | MsaG035676

M. sativa ssp. caerulea / MsaG035676

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035676	RHN44458.1	75.789	380	48	4	1	357	510	868	0.0	569
MsaG035676	RHN44458.1	81.016	374	54	2	1	357	1485	1858	0.0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035676	sp\|Q9SCZ4\|FERON_ARATH	54.688	320	123	5	5	304	503	820	2.10e-106	336

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035676	tr\|A0A396GVJ4\|A0A396GVJ4_MEDTR	75.789	380	48	4	1	357	510	868	0.0	569
MsaG035676	tr\|A0A396GVJ4\|A0A396GVJ4_MEDTR	81.016	374	54	2	1	357	1485	1858	0.0	613

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035676	MtrunA17_Chr7g0219651	81.016	374	54	2	1	357	1485	1858	0.0	613
MsaG035676	MtrunA17_Chr7g0219651	75.789	380	48	4	1	357	510	868	0.0	569
MsaG035676	MtrunA17_Chr7g0219571	79.679	374	59	2	1	357	500	873	0.0	602
MsaG035676	MtrunA17_Chr7g0219601	76.501	383	62	4	1	357	486	866	0.0	580
MsaG035676	MtrunA17_Chr7g0219611	77.273	374	63	3	1	357	480	848	0.0	577
MsaG035676	MtrunA17_Chr4g0025961	74.674	383	71	3	1	357	493	875	0.0	577
MsaG035676	MtrunA17_Chr7g0219581	79.739	306	52	2	62	357	1	306	6.61e-176	492
MsaG035676	MtrunA17_Chr7g0219691	64.343	373	108	4	1	348	498	870	1.84e-162	478
MsaG035676	MtrunA17_Chr7g0219721	64.075	373	109	4	1	348	498	870	1.11e-161	476
MsaG035676	MtrunA17_Chr7g0219671	60.204	392	120	5	1	356	498	889	1.27e-159	471

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035676	AT3G51550.1	54.688	320	123	5	5	304	503	820	2.13e-107	336
MsaG035676	AT5G39000.1	50.955	314	132	4	5	297	487	799	6.17e-99	313
MsaG035676	AT5G38990.1	50.318	314	134	4	5	297	494	806	1.91e-98	312
MsaG035676	AT3G04690.1	50.645	310	134	4	20	312	501	808	1.33e-93	298
MsaG035676	AT5G28680.1	51.815	303	127	4	20	305	505	805	2.61e-92	295
MsaG035676	AT5G28680.2	51.815	303	127	4	20	305	505	805	2.61e-92	295
MsaG035676	AT1G30570.1	50.508	295	127	4	20	297	504	796	1.62e-86	280
MsaG035676	AT4G39110.1	47.910	311	142	4	20	313	510	817	4.18e-86	279
MsaG035676	AT2G21480.1	49.492	295	129	4	20	297	509	800	1.06e-84	275
MsaG035676	AT2G39360.1	47.176	301	139	5	24	306	475	773	8.54e-84	272

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Find 92 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTACGATGAAGGTG+CGG	0.687395	7:-18756824	MsaT035676.1:CDS
AAAGAGCACCAATATATTGT+TGG	0.448315	7:-18757103	MsaT035676.1:CDS
AAAGGATGTTCATGAGTACT+TGG	0.509653	7:+18756520	None:intergenic
AAGACTCTCAATGAGTCAAG+TGG	0.571047	7:-18756698	MsaT035676.1:CDS
AAGGAGCGGCACAAATGCGG+TGG	0.640480	7:+18757538	None:intergenic
ACAATGGTGAAGGGAAGCCT+TGG	0.513294	7:-18757000	MsaT035676.1:CDS
ACTCAGGATCTAAATACCCA+AGG	0.643407	7:+18756983	None:intergenic
ACTCTTTGCGAGTATCTTTA+TGG	0.204104	7:-18757240	MsaT035676.1:CDS
AGACTCGATCACGGGTGAGT+TGG	0.493919	7:-18756770	MsaT035676.1:CDS
AGAGTTTGCGTTGAAATTGC+TGG	0.411254	7:-18756665	MsaT035676.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	18756408	18757608	18756408	ID=MsaG035676
Chr7	mRNA	18756408	18757608	18756408	ID=MsaT035676.1;Parent=MsaG035676
Chr7	exon	18756408	18757402	18756408	ID=MsaT035676.1.exon2;Parent=MsaT035676.1
Chr7	CDS	18756408	18757402	18756408	ID=cds.MsaT035676.1;Parent=MsaT035676.1
Chr7	exon	18757452	18757608	18757452	ID=MsaT035676.1.exon1;Parent=MsaT035676.1
Chr7	CDS	18757452	18757608	18757452	ID=cds.MsaT035676.1;Parent=MsaT035676.1

Gene Sequence

>MsaT035676.1

ATGAAAGATAACTCATCGAAGACAAAGAACAAAGGGTCACCACCTTTTCCACCGCATTTGTGCCGCTCCTTTACAATCGCAGAGATCAAAGGAGCCACAAAGAACTTCGATGATGATTTCATCATCAGTGTTGGAGGGTTCGGCAACGTGTACAAAGGCTCTCAACAAGGTGCACATGAGTTCATGAACGAAATCGAGTTGCTCTCCCAGCTTGGCCACATTCACTTGGTGTCCCATGTGGGATATTGCAATGACAACACAGAGATGATTTTGTTTTTTGAGTTCATAAAGCACGGTACTCTTTGCGAGTATCTTTATGGTTCTAATAATCAGCCACTATCGTGGGAGCAGAGGCTTGAGATTCTTTTGGGTGCAGCTAGAGGGTTGCATTATCTTCATGATGAGGTGAAGCATAAGATAATACATTGTGACGTAAAGAGCACCAATATATTGTTGGATGAGAAATGGGTAGCTAAGGTTTCTGACTTTGGTTTATCCAAGGTGGGACCCACGGGAATATCGACTACCCACGTTAGCACAATGGTGAAGGGAAGCCTTGGGTATTTAGATCCTGAGTACTATATGTTCCAAAGCCTAACTCTAAAAGCAGATGTGTACTCGTTCGATGTCGTACTGCTTGAAGTGTTGTGTGCTAGGCCACCTTTGGTTCGCGATTTGGATAAGAATACAACTAGTCTAGTTTGTTGGTTTAAAAAATGCTACGATGAAGGTGCGGCTATTGAACAAACAGTGGATCCATTTCTAAGAGACTCGATCACGGGTGAGTTGGAATATTATTGTAAGTTGGCATTAAGTTGTTTGCATGATGATGGAACTCAAAGACTCTCAATGAGTCAAGTGGTTGGGGGTTTAGAGTTTGCGTTGAAATTGCTGGTGAGTGAGGAAGATAGCCAGGTTGATACGACCCAAAAAGGGAGGACATATATGAGTGATGAAGAGAGTGACCTGCATTTCACTAGATTCCACACCTACAAGGAGAGCACTATCTCAACAAGGCCAAGTACTCATGAACATCCTTTCTATAGGATTGAGAATCAAAGAACACGGTCGAATATAGGTAGAACACCCAAAATCAAACCACACCAAACAAACTCCCAGACACGACAACCAAAAGAAAACACCACCACCTAA

Protein sequence

>MsaT035676.1

MKDNSSKTKNKGSPPFPPHLCRSFTIAEIKGATKNFDDDFIISVGGFGNVYKGSQQGAHEFMNEIELLSQLGHIHLVSHVGYCNDNTEMILFFEFIKHGTLCEYLYGSNNQPLSWEQRLEILLGAARGLHYLHDEVKHKIIHCDVKSTNILLDEKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMFQSLTLKADVYSFDVVLLEVLCARPPLVRDLDKNTTSLVCWFKKCYDEGAAIEQTVDPFLRDSITGELEYYCKLALSCLHDDGTQRLSMSQVVGGLEFALKLLVSEEDSQVDTTQKGRTYMSDEESDLHFTRFHTYKESTISTRPSTHEHPFYRIENQRTRSNIGRTPKIKPHQTNSQTRQPKENTTT*