AlfalfaGEDB | MsaG035678

M. sativa ssp. caerulea / MsaG035678

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035678	XP_013447634.1	84.302	688	102	3	1	685	205	889	0.0	1169

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035678	sp\|Q9SCZ4\|FERON_ARATH	46.753	693	319	14	29	685	217	895	0.0	577

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035678	tr\|A0A072U790\|A0A072U790_MEDTR	84.302	688	102	3	1	685	205	889	0.0	1169

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000048	MsaG035678	0.813625	4.013916e-51	7.495763e-49
MsaG000069	MsaG035678	0.821392	7.271386e-53	1.659238e-50
MsaG000202	MsaG035678	0.875778	4.891121e-68	7.282646e-65
MsaG000350	MsaG035678	0.856376	6.511627e-62	4.422978e-59
MsaG000416	MsaG035678	0.820597	1.106292e-52	2.471768e-50
MsaG000705	MsaG035678	0.820037	1.484765e-52	3.268753e-50
MsaG000753	MsaG035678	0.813755	3.759734e-51	7.044045e-49
MsaG000792	MsaG035678	0.867079	3.586550e-65	3.685070e-62
MsaG000881	MsaG035678	0.802200	1.054466e-48	1.498494e-46
MsaG000910	MsaG035678	0.806610	1.283313e-49	2.020554e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG035678	MtrunA17_Chr7g0219671	84.302	688	102	3	1	685	205	889	1169
MsaG035678	MtrunA17_Chr7g0219781	83.357	691	107	4	1	685	204	892	1152
MsaG035678	MtrunA17_Chr7g0219691	78.324	692	135	6	1	685	205	888	1102
MsaG035678	MtrunA17_Chr7g0219721	78.035	692	137	6	1	685	205	888	1102
MsaG035678	MtrunA17_Chr7g0219681	74.045	628	147	8	1	621	198	816	936
MsaG035678	MtrunA17_Chr7g0219571	67.630	692	190	10	1	685	208	872	914
MsaG035678	MtrunA17_Chr4g0025961	65.751	692	212	7	1	685	201	874	900
MsaG035678	MtrunA17_Chr7g0219651	66.040	692	197	12	1	685	1197	1857	883
MsaG035678	MtrunA17_Chr7g0219651	64.062	704	195	11	1	685	203	867	855
MsaG035678	MtrunA17_Chr7g0219611	64.783	690	194	10	1	685	202	847	864

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035678	AT3G51550.1	46.753	693	319	14	29	685	217	895	0.0	577
MsaG035678	AT5G39000.1	44.767	688	344	16	17	685	203	873	2.40e-178	531
MsaG035678	AT5G28680.1	47.136	611	279	14	34	615	210	805	2.61e-177	527
MsaG035678	AT5G28680.2	47.136	611	279	14	34	615	210	805	2.61e-177	527
MsaG035678	AT3G04690.1	44.737	646	306	14	34	642	209	840	3.02e-176	525
MsaG035678	AT5G38990.1	44.813	694	348	14	17	685	197	880	9.54e-176	524
MsaG035678	AT1G30570.1	40.030	662	331	15	33	663	223	849	9.17e-141	433
MsaG035678	AT4G39110.1	41.472	598	302	14	31	608	233	802	3.40e-137	424
MsaG035678	AT2G21480.1	40.796	603	313	13	24	608	225	801	1.14e-134	417
MsaG035678	AT5G54380.1	41.304	598	311	13	34	608	207	787	5.78e-132	410

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Find 139 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCGGCACAAATGGGA+TGG	0.622880	7:-18865176	None:intergenic
AACAACAACAAGGATAACTG+TGG	0.650566	7:-18865021	None:intergenic
AACACCGTTGCAGAGAACAA+AGG	0.681860	7:-18866253	None:intergenic
AACATACCTGTATCTTGGTC+TGG	0.472172	7:-18864396	None:intergenic
AACCGACAAATCTTTAGAGA+CGG	0.555796	7:+18864338	MsaT035678.1:CDS
AACCGTCTCTAAAGATTTGT+CGG	0.394130	7:-18864340	None:intergenic
AACGATAATTTATGTCACTG+AGG	0.665046	7:-18864275	None:intergenic
AACTGCAAGATATTACGGAA+GGG	0.643766	7:+18864554	MsaT035678.1:CDS
AAGAGACTTGAGATTCTATT+GGG	0.399290	7:+18865524	MsaT035678.1:CDS
AAGATTTGTCGGTTTGAACT+TGG	0.446756	7:-18864329	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	18864249	18866306	18864249	ID=MsaG035678
Chr7	mRNA	18864249	18866306	18864249	ID=MsaT035678.1;Parent=MsaG035678
Chr7	exon	18864249	18866306	18864249	ID=MsaT035678.1.exon1;Parent=MsaT035678.1
Chr7	CDS	18864249	18866306	18864249	ID=cds.MsaT035678.1;Parent=MsaT035678.1

Gene Sequence

>MsaT035678.1

ATGCCTTCTTTTCTCTATTACACAAACCTCAGTGACATAAATTATCGTTTAAAATCACTTGGGTCAGACCTCAATGATTACCAAGTTCAAACCGACAAATCTTTAGAGACGGTTTATAGAGTCAATGTTGGCGGCAATCAAGTTCCACCAGACCAAGATACAGGTATGTTTCGTAATTGGAACAATGATTATCCCCGTTACTTGGAGAAAGAATATCCACACAGCATATCAACTGATTCTATAGAACATCTAAACTATGAAAACAACACCATTCAAAATTACACTGCACCAGAGGCTGTTTACTTAACTGCAAGATATTACGGAAGGGATGTGAAACAGGATTACAAATACAATGTAACTTGGAATTTTGAAGTTGATTCTAGTTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTAGTCTCAAAGTACAAAAGCCAGGTGATAGAGCCTTTCAGATTTTCATAGCTAACAATTTGGCTGAGGGAAACGCTGATGTGATAAGGTGGAGTGGTGCTCGTTTGGTTCCTGTTCATAAGGATTATGCTGTGTCTCAAGAAGGAAGCTCTCAAATTAAAAGAGTTAATCTTTCCATCAAACTTCAACCAGCACCAGAAACTCTCTTCACAATATACCCTGATGTTACCTTGAGTGGAATCGAGATTTTTAAAATAAATGATAAAAATAATAATCTCTTTGGAATGAATCCAAAACCCATCATTCTATCTCCCAAAGAACAAGGTTTACCAACTCGACAATCGAAGAAGTCATCCACAGTTATCCTTGTTGTTGTTGGAGTTTCATGTCTCTTGCTAGCATCTGTTGTTGGAATGGTCGTTTTTGTTCGAAGGAGAAGAAGATTTGTATCTAATGTTGAAATGGAAGATAGTTCATGGAAGACAAACAAAGAAGGTTCCTCAACTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCGGAGATAAGAGAAGCCACAAACAACTTCGAAGATATTTTTATCATCGGTGTTGGAGGGTTCGGCAACGTGTACAAAGGTTACATCGATGGAGTTACACCTGTTGCAATAAAACGTCTTAAACCAGGTTCTCAACAAGGTGTAAACGAGTTCATGAATGAAATCGAGTTGCTCTCTCAACTTCGTCACATTCACTTGGTTTCTCTCATTGGATATTGCAACGAAGGTGCAGAGATGATTCTCGTTTATGACTTCATGGAACGTGGCACTCTTCGTGAATATCTCTATGGTTCAGATAACGAACCTCTTACTTGGAAGAAGAGACTTGAGATTCTATTGGGTGCGGCAAGGGGGTTGCATTATCTTCATGCAGGTGCGAAGCACAATATCATACACCGTGATGTGAAGAGTACCAACATATTGTTAGATGATAAATGGGTGGCTAAGGTTTCTGATTTCGGATTATCAAAAGTGGGACCAACAGGAATGTCGATGACTCACGTCAGCACTGTGGTGAAGGGTAGTCTCGGGTATTTAGATCCCGAATACTACCTTCGTCAAAGGTTGACTCTAAAGTCGGACGTGTACTCTTTCGGTGTTGTGCTTCTTGAGGTGTTGTGTGCGAGACCACCTTTGGTTCGTTCTTTGGAAAAGAAAAAAGCGAGTTTAGTCTTTTGGTTCCAAAGATGTTACAATGAAGGTGTGATCATTGAAGAGATGGTGGACCCGTTCATAAAGGATACCATATCAAGTGAGTGTTTGAAATGCTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAACGAATGTCAATGAGTGATGTGGTTGGAGCTTTGGAGTTTGCATTGCAGTTGGAGATGAGTGAGGAGGATACTAAGTTTGTTTGGACTCATGAAAAGGAAAAAAGTGAGGAAAGACAACTAGTGTCGCGGTTTACAAGTGAAGATGGAAGTGATGTTCGTTTCACGAGTAGCAGTGATGATTATGAGACTCAAACAAGCAAAGTAAGCACCAATTCAGCCAGTACTGAAGAACAACCTTTGTTCTCTGCAACGGTGTTTTCTGAGATTGGAAATCCAAGAGCACGATAG

Protein sequence

>MsaT035678.1

MPSFLYYTNLSDINYRLKSLGSDLNDYQVQTDKSLETVYRVNVGGNQVPPDQDTGMFRNWNNDYPRYLEKEYPHSISTDSIEHLNYENNTIQNYTAPEAVYLTARYYGRDVKQDYKYNVTWNFEVDSSFTYMVRLHFCEFSLKVQKPGDRAFQIFIANNLAEGNADVIRWSGARLVPVHKDYAVSQEGSSQIKRVNLSIKLQPAPETLFTIYPDVTLSGIEIFKINDKNNNLFGMNPKPIILSPKEQGLPTRQSKKSSTVILVVVGVSCLLLASVVGMVVFVRRRRRFVSNVEMEDSSWKTNKEGSSTLPSHLCRYFTIAEIREATNNFEDIFIIGVGGFGNVYKGYIDGVTPVAIKRLKPGSQQGVNEFMNEIELLSQLRHIHLVSLIGYCNEGAEMILVYDFMERGTLREYLYGSDNEPLTWKKRLEILLGAARGLHYLHAGAKHNIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCARPPLVRSLEKKKASLVFWFQRCYNEGVIIEEMVDPFIKDTISSECLKCYCQMVLSCLHDDGNQRMSMSDVVGALEFALQLEMSEEDTKFVWTHEKEKSEERQLVSRFTSEDGSDVRFTSSSDDYETQTSKVSTNSASTEEQPLFSATVFSEIGNPRAR*