AlfalfaGEDB | MsaG035690

M. sativa ssp. caerulea / MsaG035690

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF11721.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035690	XP_013447637.2	60.134	898	168	13	1	718	1	888	0.0	991

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035690	sp\|Q9SCZ4\|FERON_ARATH	53.390	354	142	7	378	718	552	895	2.92e-109	355
MsaG035690	sp\|Q9SCZ4\|FERON_ARATH	30.990	384	148	17	27	324	27	379	1.18e-26	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035690	tr\|A0A396GTL6\|A0A396GTL6_MEDTR	60.134	898	168	13	1	718	1	888	0.0	991

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035690	MtrunA17_Chr7g0219691	60.134	898	168	13	1	718	1	888	0.0	991
MsaG035690	MtrunA17_Chr7g0219721	59.465	898	174	13	1	718	1	888	0.0	978
MsaG035690	MtrunA17_Chr7g0219681	59.685	826	151	10	1	654	1	816	0.0	892
MsaG035690	MtrunA17_Chr7g0219611	52.198	887	215	13	1	718	1	847	0.0	808
MsaG035690	MtrunA17_Chr7g0219671	85.024	414	21	1	346	718	476	889	0.0	723
MsaG035690	MtrunA17_Chr7g0219671	66.180	411	65	3	1	338	1	410	2.16e-169	509
MsaG035690	MtrunA17_Chr7g0219781	78.436	422	46	3	341	718	472	892	0.0	653
MsaG035690	MtrunA17_Chr7g0219781	59.277	415	88	6	1	339	1	410	4.75e-142	438
MsaG035690	MtrunA17_Chr7g0219741	58.974	429	98	3	1	355	1	425	7.10e-159	471
MsaG035690	MtrunA17_Chr4g0025961	67.742	341	100	2	378	718	544	874	1.01e-157	479

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035690	AT3G51550.1	53.390	354	142	7	378	718	552	895	2.97e-110	355
MsaG035690	AT3G51550.1	30.990	384	148	17	27	324	27	379	1.20e-27	120
MsaG035690	AT5G28680.1	60.886	271	104	2	378	648	537	805	2.83e-104	338
MsaG035690	AT5G28680.1	24.818	411	200	14	5	338	1	379	4.63e-22	102
MsaG035690	AT5G28680.2	60.886	271	104	2	378	648	537	805	2.83e-104	338
MsaG035690	AT5G28680.2	24.818	411	200	14	5	338	1	379	4.63e-22	102
MsaG035690	AT3G04690.1	54.839	310	126	3	378	675	533	840	6.42e-104	337
MsaG035690	AT3G04690.1	24.289	387	181	14	19	325	16	370	1.51e-20	97.4
MsaG035690	AT5G39000.1	48.725	353	156	5	378	718	534	873	3.53e-97	320
MsaG035690	AT5G39000.1	29.563	389	158	15	28	330	24	382	1.12e-24	110

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Find 136 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAACCCTTCACTT+TGG	0.433579	7:+19066637	MsaT035690.1:CDS
AAACCAAATAGATAGATAGT+TGG	0.480169	7:-19066230	None:intergenic
AAAGCATTGTCGTTAAGACT+TGG	0.513526	7:-19066885	None:intergenic
AAATGATAATCTGGGTCATT+GGG	0.336255	7:-19066831	None:intergenic
AAATGGAAGAAAGTTCATGG+AGG	0.747086	7:+19067689	MsaT035690.1:CDS
AACACCGAAGGAGTAGACGT+CGG	0.744417	7:-19068337	None:intergenic
AACACCGTTGCAGAAAACAA+AGG	0.699066	7:-19068807	None:intergenic
AACCAAATAGATAGATAGTT+GGG	0.458605	7:-19066229	None:intergenic
AACCCAAATTCGATTATCTA+AGG	0.364852	7:-19066331	None:intergenic
AACTGCAAGAAGTCGTGGAT+TGG	0.509528	7:+19067113	MsaT035690.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	19066189	19068860	19066189	ID=MsaG035690
Chr7	mRNA	19066189	19068860	19066189	ID=MsaT035690.1;Parent=MsaG035690
Chr7	exon	19066189	19066966	19066189	ID=MsaT035690.1.exon1;Parent=MsaT035690.1
Chr7	CDS	19066189	19066966	19066189	ID=cds.MsaT035690.1;Parent=MsaT035690.1
Chr7	exon	19067100	19067197	19067100	ID=MsaT035690.1.exon2;Parent=MsaT035690.1
Chr7	CDS	19067100	19067197	19067100	ID=cds.MsaT035690.1;Parent=MsaT035690.1
Chr7	exon	19067288	19067429	19067288	ID=MsaT035690.1.exon3;Parent=MsaT035690.1
Chr7	CDS	19067288	19067429	19067288	ID=cds.MsaT035690.1;Parent=MsaT035690.1
Chr7	exon	19067608	19067724	19067608	ID=MsaT035690.1.exon4;Parent=MsaT035690.1
Chr7	CDS	19067608	19067724	19067608	ID=cds.MsaT035690.1;Parent=MsaT035690.1
Chr7	exon	19067839	19068860	19067839	ID=MsaT035690.1.exon5;Parent=MsaT035690.1
Chr7	CDS	19067839	19068860	19067839	ID=cds.MsaT035690.1;Parent=MsaT035690.1

Gene Sequence

>MsaT035690.1

ATGGCAAACTCCATAAATGAAAAATTTCAGACTAAAATCACCCAACTATCTATCTATTTGGTTTTGTTCCCTCTATTTGCTAACTCATACAACCCTGATTACAATTTAGCCATCAATTGTGGTTCATCAGCAAACAATGCTGCCTTAGATAATCGAATTTGGGTTGGTGATCATATTGATAACTCCAATCTCTTTACCTTCATTGAACCAAAAACCACAAACCCACCTCTTAATATACCACCTAATTCCCTCTCAAATATCCAAATTCCATACACAACCGCGCGTATCTCTCTCTCAAATTTCACATACTCATTTTCTACAATCACTAGTTCCCCTGTTTTTCTTCGCCTTCATTTTTACCCGACTTCATACCGAAACTTTGAACCTTCTAATTCCCTTTCAAATGCACTTTTCTCTGTTAAAGTAAACAACAACCTTACCCTTCTTCAAAACTTCAACCCTTCACTTTGGATTCATGATGACGAGGAGAAAATCACCAAAGAATATTGTATCCCAATCAATCCAAATGAGAAGCTAACCATAACTTTCATTCCCAACGACATAAACACATCAAATGTTTATTATGCTTTTACTAACGGAATCGAAGTTGTGTCTATGCCTTCTTTTCTCTATTACACAAACCCCAATGACCCAGATTATCATTTGAAATCACTTGACGTAGACAACAGTGATTACCCAAGTCTTAACGACAATGCTTTGGAGATTGTTTATAGAGTCAATGTTGGAGATAATCAAGTTCCTGCAAACCAAGATACGGAAGCTGTTTACTTAACTGCAAGAAGTCGTGGATTGGATGAGACAGAGGATTTCAATGTAACTTGGAATTTCGAAGTTGATGTTGGTTTTACTTATATGATAAACGCTGATGTGATTGATTGGAGTACTGCTCCTATGGTTCCTGTTCATAATGATTATGTTGTGTCTATGTACTCTCAAGAAGGAAGCTCTCAAATTGAAAGACTTAATCTTTCAATCAAGCTACAACGAGCACCAGAACTTTCATGTCTCTTGCTAGCATTTGTTGTTGTGGGAATCATCGTTTATGCTAGAAGGAGAAGAAGACTTGAATCTTATATTGAAATGGAAGAAAGTTCATGGAGGACAAGAAAAGAAGGTTACATCGATGAAGGTACACCCGTAGCAATAAAACGTTTGAAACCAGGTTCTCAACAAGGTGTAGACGAGTTCATGAATGAAATAGAGTTACTCTCTCAGCTTCGTCATATTCACTTGGTTTCACTCATTGGATATTGCAACGAAGGTGCAGAGATGATTCTTGTTTATGACTTCATGGAACGTGGCACTCTTCGTGAATATCTCTATGGTTCAGATAACGAACCTCTTACTTGGAAGAAGAGACTTGAGATTTTAATGGGTGCGGCAAGGGGTTTGCATTATCTTCATGCAGGTGCGAAGCACAATATCATACACCGTGATGTGAAGAGTACCAACATATTGTTAGATGATAAATGGGTGGCTAAGGTTTCTGATTTCGGTTTATCAAAAGTGGGTCCAACAGGAATGTCGATGACCCACGTCAGCACTAAGGTGAAGGGTAGTCTCGGGTATTTAGATCCCGAATACTACCTTCGTCAAAGGTTGACTCTAAAGTCCGACGTCTACTCCTTCGGTGTTGTGCTTCTTGAGGTGTTGTGTGCGACACCACCTTTGGTTCGTTCTTTGGAAAAGAAAAAAGCGAGTTTAGTATTTTGGTTCCAAAGATGTTACAATGAAGGTGTGATCATTGAAGAGATGGTGGACCCGTTCATAAAGGATACCATATCAAGTGAGTGTTTGAAATGCTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAACGAATGTCGATGAGTGATGTGGTTGGAGCTTTTGAGTTTGCATTGCAGTTGGAGATGAGTGAGGATGATACTAAGTTTGTTTGGACTCATGAAAAGGAAAAAAGGGAGGAAAGACAACAAGTGTCGCAGTTTACAAGTGAAGATGGAAGTGATGTTCGTTTCACGAGTAGCAGTGATGATTATGAGACTCAAATAAGCAAGGTAAGAACCAATTCAGCCAGTACTGAAGAACAACCTTTGTTTTCTGCAACGGTGTTTTCTGAGATTGGGAATCCAAGAGCACGATAG

Protein sequence

>MsaT035690.1

MANSINEKFQTKITQLSIYLVLFPLFANSYNPDYNLAINCGSSANNAALDNRIWVGDHIDNSNLFTFIEPKTTNPPLNIPPNSLSNIQIPYTTARISLSNFTYSFSTITSSPVFLRLHFYPTSYRNFEPSNSLSNALFSVKVNNNLTLLQNFNPSLWIHDDEEKITKEYCIPINPNEKLTITFIPNDINTSNVYYAFTNGIEVVSMPSFLYYTNPNDPDYHLKSLDVDNSDYPSLNDNALEIVYRVNVGDNQVPANQDTEAVYLTARSRGLDETEDFNVTWNFEVDVGFTYMINADVIDWSTAPMVPVHNDYVVSMYSQEGSSQIERLNLSIKLQRAPELSCLLLAFVVVGIIVYARRRRRLESYIEMEESSWRTRKEGYIDEGTPVAIKRLKPGSQQGVDEFMNEIELLSQLRHIHLVSLIGYCNEGAEMILVYDFMERGTLREYLYGSDNEPLTWKKRLEILMGAARGLHYLHAGAKHNIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGMSMTHVSTKVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCATPPLVRSLEKKKASLVFWFQRCYNEGVIIEEMVDPFIKDTISSECLKCYCQMVLSCLHDDGNQRMSMSDVVGAFEFALQLEMSEDDTKFVWTHEKEKREERQQVSQFTSEDGSDVRFTSSSDDYETQISKVRTNSASTEEQPLFSATVFSEIGNPRAR*