AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG035785

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG035785 MtrunA17_Chr2g0333981 97.159 176 5 0 1 176 1 176 4.07e-128 357
MsaG035785 MtrunA17_Chr4g0071601 84.409 186 19 2 1 176 1 186 7.95e-103 293
MsaG035785 MtrunA17_Chr8g0379021 70.060 167 50 0 1 167 1 167 1.68e-85 249
MsaG035785 MtrunA17_Chr4g0018951 65.644 163 48 2 1 163 1 155 4.16e-67 202
MsaG035785 MtrunA17_Chr3g0099421 40.351 171 92 2 8 171 30 197 2.87e-40 137
MsaG035785 MtrunA17_Chr1g0206701 39.306 173 95 2 8 173 5 174 3.00e-40 136
MsaG035785 MtrunA17_Chr1g0149391 38.728 173 96 2 8 173 5 174 3.65e-40 135
MsaG035785 MtrunA17_Chr1g0206991 38.150 173 97 2 8 173 5 174 6.23e-40 133
MsaG035785 MtrunA17_Chr8g0355091 39.766 171 93 3 8 171 5 172 3.09e-39 133
MsaG035785 MtrunA17_Chr1g0206721 38.012 171 96 2 8 171 5 172 1.72e-38 131
MsaG035785 MtrunA17_Chr2g0292791 38.596 171 95 3 8 171 5 172 5.27e-38 130
MsaG035785 MtrunA17_Chr1g0208561 40.000 165 89 2 8 165 5 166 5.15e-37 127
MsaG035785 MtrunA17_Chr3g0119901 38.953 172 101 1 6 173 3 174 5.35e-37 127
MsaG035785 MtrunA17_Chr3g0085241 38.506 174 97 2 7 173 36 206 9.45e-37 127
MsaG035785 MtrunA17_Chr3g0089141 39.394 165 90 2 8 165 5 166 2.20e-36 125
MsaG035785 MtrunA17_Chr1g0208581 37.576 165 93 2 8 165 5 166 5.82e-35 122
MsaG035785 MtrunA17_Chr2g0325971 39.394 165 90 2 8 165 5 166 6.99e-35 122
MsaG035785 MtrunA17_Chr1g0206691 35.625 160 93 2 21 173 1 157 3.79e-32 114
MsaG035785 MtrunA17_Chr1g0188671 35.429 175 103 2 2 169 37 208 1.59e-30 112
MsaG035785 MtrunA17_Chr1g0187361 35.294 170 98 2 8 169 5 170 2.81e-30 110
MsaG035785 MtrunA17_Chr3g0099411 41.600 125 63 2 8 125 5 126 4.19e-30 109
MsaG035785 MtrunA17_Chr5g0419601 33.929 168 101 2 8 168 5 169 6.14e-30 109
MsaG035785 MtrunA17_Chr5g0422421 35.465 172 99 2 8 171 5 172 1.41e-29 108
MsaG035785 MtrunA17_Chr2g0300441 36.810 163 93 3 8 163 5 164 1.59e-29 108
MsaG035785 MtrunA17_Chr2g0317451 34.483 174 102 3 8 173 5 174 3.25e-29 107
MsaG035785 MtrunA17_Chr2g0317481 34.483 174 102 3 8 173 5 174 3.32e-29 107
MsaG035785 MtrunA17_Chr5g0422941 33.333 168 108 2 8 171 5 172 4.21e-26 99.8
MsaG035785 MtrunA17_Chr4g0074101 40.741 135 76 3 11 142 1 134 8.75e-26 97.8
MsaG035785 MtrunA17_Chr2g0300421 40.157 127 66 2 8 127 5 128 1.06e-25 97.1
MsaG035785 MtrunA17_Chr1g0169761 45.455 99 52 1 11 107 1 99 1.99e-24 94.0
MsaG035785 MtrunA17_Chr8g0376821 41.964 112 63 1 11 120 1 112 2.15e-24 94.0
MsaG035785 MtrunA17_Chr8g0356071 36.641 131 80 2 11 139 1 130 7.60e-24 92.0
MsaG035785 MtrunA17_Chr8g0345001 35.625 160 96 3 5 161 15 170 2.21e-23 91.3
MsaG035785 MtrunA17_Chr7g0238991 36.301 146 81 4 29 166 38 179 1.85e-22 90.5
MsaG035785 MtrunA17_Chr1g0175611 38.655 119 71 1 11 127 1 119 4.06e-22 87.4
MsaG035785 MtrunA17_Chr1g0180591 48.810 84 41 1 11 94 1 82 7.31e-22 87.0
MsaG035785 MtrunA17_Chr1g0175601 35.461 141 74 3 11 137 1 138 1.43e-21 86.3
MsaG035785 MtrunA17_Chr3g0089151 38.168 131 69 4 8 130 5 131 1.59e-21 85.1
MsaG035785 MtrunA17_Chr8g0357771 41.414 99 56 1 11 107 1 99 1.67e-20 83.6
MsaG035785 MtrunA17_Chr4g0052061 50.000 72 36 0 11 82 1 72 3.85e-20 82.0
MsaG035785 MtrunA17_Chr4g0052081 41.000 100 52 2 11 104 1 99 8.75e-20 81.6
MsaG035785 MtrunA17_Chr3g0093131 36.232 138 83 3 29 161 36 173 2.21e-19 80.9
MsaG035785 MtrunA17_Chr3g0111841 52.542 59 28 0 18 76 2 60 2.20e-18 75.1
MsaG035785 MtrunA17_Chr3g0097101 36.134 119 66 3 8 125 13 122 3.27e-18 79.0
MsaG035785 MtrunA17_Chr1g0187351 50.000 64 32 0 21 84 1 64 5.26e-18 74.3
MsaG035785 MtrunA17_Chr1g0173161 53.030 66 31 0 11 76 1 66 1.37e-17 73.6
MsaG035785 MtrunA17_Chr4g0020221 32.990 194 96 6 11 176 1 188 1.61e-17 77.4
MsaG035785 MtrunA17_Chr8g0351051 50.725 69 34 0 11 79 1 69 3.00e-17 76.6
MsaG035785 MtrunA17_Chr3g0111831 48.485 66 34 0 19 84 11 76 3.67e-17 72.4
MsaG035785 MtrunA17_Chr8g0380021 44.828 87 47 1 6 92 13 98 3.93e-17 76.3
MsaG035785 MtrunA17_Chr3g0077501 46.667 75 40 0 11 85 1 75 5.22e-17 75.5
MsaG035785 MtrunA17_Chr1g0159661 29.630 162 102 3 11 169 1 153 1.16e-16 73.6
MsaG035785 MtrunA17_Chr4g0049901 32.240 183 98 3 11 176 27 200 1.70e-16 74.3
MsaG035785 MtrunA17_Chr3g0134451 35.417 144 69 5 11 133 1 141 3.06e-16 74.7
MsaG035785 MtrunA17_Chr2g0284911 32.450 151 85 5 2 150 7 142 3.45e-16 73.9
MsaG035785 MtrunA17_Chr1g0204111 44.595 74 41 0 6 79 12 85 3.69e-16 73.6
MsaG035785 MtrunA17_Chr3g0125241 44.615 65 36 0 11 75 26 90 4.91e-16 72.4
MsaG035785 MtrunA17_Chr4g0061671 40.000 95 55 2 11 103 1 95 5.19e-16 72.0
MsaG035785 MtrunA17_Chr5g0425191 57.407 54 23 0 11 64 1 54 5.54e-16 69.7
MsaG035785 MtrunA17_Chr8g0351041 37.500 112 67 1 11 119 1 112 5.71e-16 71.2
MsaG035785 MtrunA17_Chr3g0142191 34.810 158 82 7 11 162 1 143 5.79e-16 72.8
MsaG035785 MtrunA17_Chr2g0302091 34.659 176 97 5 5 176 35 196 6.95e-16 72.0
MsaG035785 MtrunA17_Chr4g0044071 53.448 58 27 0 11 68 1 58 8.08e-16 69.7
MsaG035785 MtrunA17_Chr5g0404951 39.604 101 54 2 11 104 1 101 8.74e-16 72.4
MsaG035785 MtrunA17_Chr5g0427401 43.478 69 39 0 11 79 1 69 9.72e-16 72.0
MsaG035785 MtrunA17_Chr2g0308251 46.377 69 37 0 11 79 1 69 1.93e-15 67.8
MsaG035785 MtrunA17_Chr5g0427921 46.667 60 32 0 11 70 1 60 2.07e-15 67.0
MsaG035785 MtrunA17_Chr2g0279821 45.070 71 39 0 11 81 1 71 2.47e-15 71.2
MsaG035785 MtrunA17_Chr4g0049541 45.070 71 39 0 11 81 1 71 2.54e-15 70.9
MsaG035785 MtrunA17_Chr4g0057151 49.275 69 35 0 11 79 1 69 3.31e-15 70.1
MsaG035785 MtrunA17_Chr5g0412461 35.000 120 74 2 11 126 1 120 3.64e-15 70.5
MsaG035785 MtrunA17_Chr6g0474371 45.714 70 37 1 11 79 1 70 3.71e-15 70.1
MsaG035785 MtrunA17_Chr7g0220111 54.386 57 26 0 11 67 1 57 3.95e-15 70.9
MsaG035785 MtrunA17_Chr7g0246381 49.206 63 32 0 11 73 1 63 4.32e-15 66.6
MsaG035785 MtrunA17_Chr8g0351031 37.500 112 67 1 11 119 1 112 4.46e-15 70.1
MsaG035785 MtrunA17_Chr8g0377561 54.386 57 26 0 11 67 1 57 5.15e-15 67.0
MsaG035785 MtrunA17_Chr6g0455511 48.611 72 36 1 11 81 1 72 5.38e-15 70.5
MsaG035785 MtrunA17_Chr5g0420091 52.632 57 27 0 11 67 1 57 5.47e-15 69.7
MsaG035785 MtrunA17_Chr5g0412271 54.386 57 26 0 11 67 1 57 6.11e-15 70.1
MsaG035785 MtrunA17_Chr3g0122251 56.140 57 25 0 11 67 1 57 8.27e-15 70.1
MsaG035785 MtrunA17_Chr7g0246431 45.205 73 40 0 11 83 1 73 8.57e-15 69.3
MsaG035785 MtrunA17_Chr1g0164791 44.000 75 40 1 11 83 1 75 2.72e-14 68.2
MsaG035785 MtrunA17_Chr4g0061691 44.286 70 38 1 11 79 1 70 4.05e-14 67.8
MsaG035785 MtrunA17_Chr5g0411691 42.029 69 40 0 11 79 1 69 5.00e-14 67.8
MsaG035785 MtrunA17_Chr8g0366231 50.000 58 29 0 11 68 1 58 5.44e-14 67.8
MsaG035785 MtrunA17_Chr5g0420081 49.123 57 29 0 11 67 1 57 8.51e-14 67.0
MsaG035785 MtrunA17_Chr3g0111931 46.429 56 30 0 25 80 3 58 4.16e-13 62.4
MsaG035785 MtrunA17_Chr4g0018421 28.777 139 86 3 11 148 1 127 4.27e-13 64.7
MsaG035785 MtrunA17_Chr7g0220121 41.429 70 40 1 11 79 1 70 1.34e-12 63.9
MsaG035785 MtrunA17_Chr4g0060841 50.943 53 26 0 11 63 1 53 1.89e-12 64.3
MsaG035785 MtrunA17_Chr1g0166611 34.615 104 51 1 25 128 19 105 1.93e-12 61.2
MsaG035785 MtrunA17_Chr5g0417661 45.283 53 29 0 11 63 56 108 3.76e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG035785 AT5G60440.1 36.905 168 99 2 8 168 3 170 7.50e-32 116
MsaG035785 AT2G24840.1 37.975 158 93 3 10 162 61 218 7.86e-30 110
MsaG035785 AT1G65360.1 35.758 165 103 2 8 169 3 167 2.45e-27 102
MsaG035785 AT1G01530.1 36.905 168 95 4 8 168 3 166 4.61e-25 97.4
MsaG035785 AT4G36590.1 33.333 162 96 3 12 162 7 167 1.82e-22 90.9
MsaG035785 AT2G34440.1 35.374 147 83 4 11 150 1 142 2.76e-22 88.6
MsaG035785 AT1G28460.1 35.503 169 94 4 8 165 4 168 3.85e-22 88.2
MsaG035785 AT3G66656.1 42.400 125 56 3 11 123 1 121 1.31e-21 87.0
MsaG035785 AT1G29962.1 34.302 172 95 5 8 165 4 171 5.47e-21 85.5
MsaG035785 AT2G42830.2 38.281 128 63 4 4 127 9 124 7.83e-20 84.0
MsaG035785 AT2G42830.1 38.281 128 63 4 4 127 9 124 7.97e-20 83.6
MsaG035785 AT5G10140.2 43.299 97 52 2 11 106 1 95 1.52e-19 81.3
MsaG035785 AT5G10140.4 43.299 97 52 2 11 106 1 95 2.92e-19 80.9
MsaG035785 AT4G09960.2 34.043 141 76 4 11 149 1 126 3.25e-19 81.6
MsaG035785 AT5G10140.1 43.299 97 52 2 11 106 1 95 3.31e-19 80.9
MsaG035785 AT4G09960.6 34.043 141 76 4 11 149 2 127 3.42e-19 81.6
MsaG035785 AT4G09960.3 32.886 149 83 4 3 149 19 152 3.62e-19 82.0
MsaG035785 AT4G09960.1 34.043 141 76 4 11 149 1 126 3.66e-19 81.6
MsaG035785 AT3G04100.1 31.677 161 98 3 8 158 10 168 3.87e-19 81.3
MsaG035785 AT5G10140.3 43.299 97 52 2 11 106 1 95 4.01e-19 80.5
MsaG035785 AT4G09960.5 34.043 141 76 4 11 149 11 136 4.38e-19 81.6
MsaG035785 AT3G58780.1 39.167 120 57 4 9 124 14 121 1.07e-18 80.9
MsaG035785 AT3G58780.5 39.167 120 57 4 9 124 20 127 1.11e-18 80.9
MsaG035785 AT3G58780.4 39.167 120 57 4 9 124 14 121 1.21e-18 81.3
MsaG035785 AT1G28450.1 32.941 170 96 5 8 163 4 169 2.40e-18 78.6
MsaG035785 AT4G09960.4 34.043 141 76 4 11 149 96 221 8.31e-18 79.3
MsaG035785 AT5G20240.2 40.678 118 65 4 11 125 1 116 9.03e-18 76.3
MsaG035785 AT3G57230.2 42.353 85 47 1 11 93 1 85 1.03e-17 75.9
MsaG035785 AT5G20240.1 39.831 118 66 4 11 125 1 116 1.37e-17 77.0
MsaG035785 AT1G72350.1 28.834 163 87 3 12 174 43 176 1.64e-17 77.0
MsaG035785 AT1G77950.3 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG035785 AT1G77950.2 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG035785 AT1G77950.1 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG035785 AT1G77950.4 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG035785 AT3G54340.1 40.678 118 50 4 11 125 1 101 2.80e-17 76.6
MsaG035785 AT3G58780.2 38.136 118 54 4 9 124 14 114 3.43e-17 76.6
MsaG035785 AT5G62165.14 46.835 79 42 0 11 89 1 79 4.02e-17 73.2
MsaG035785 AT3G57230.1 42.353 85 47 1 11 93 1 85 4.07e-17 76.3
MsaG035785 AT3G57230.4 42.353 85 47 1 11 93 1 85 4.07e-17 76.3
MsaG035785 AT1G22130.1 56.897 58 25 0 11 68 1 58 4.53e-17 77.4
MsaG035785 AT5G62165.17 46.835 79 42 0 11 89 1 79 4.63e-17 74.3
MsaG035785 AT5G62165.12 46.835 79 42 0 11 89 1 79 4.63e-17 74.3
MsaG035785 AT5G62165.11 46.835 79 42 0 11 89 1 79 4.63e-17 74.3
MsaG035785 AT1G77980.1 49.296 71 35 1 11 80 1 71 5.74e-17 77.4
MsaG035785 AT4G22950.2 37.273 110 68 1 11 119 1 110 5.77e-17 74.7
MsaG035785 AT5G62165.6 46.835 79 42 0 11 89 1 79 8.17e-17 73.6
MsaG035785 AT5G62165.9 46.835 79 42 0 11 89 1 79 8.17e-17 73.6
MsaG035785 AT5G62165.7 46.835 79 42 0 11 89 1 79 8.17e-17 73.6
MsaG035785 AT5G62165.8 46.835 79 42 0 11 89 1 79 8.17e-17 73.6
MsaG035785 AT5G62165.13 46.835 79 42 0 11 89 1 79 8.17e-17 73.6
MsaG035785 AT5G51870.5 46.835 79 42 0 8 86 21 99 1.26e-16 74.3
MsaG035785 AT4G22950.3 37.273 110 68 1 11 119 1 110 1.76e-16 74.3
MsaG035785 AT4G22950.1 37.273 110 68 1 11 119 1 110 1.76e-16 74.3
MsaG035785 AT5G62165.10 46.835 79 42 0 11 89 1 79 1.76e-16 73.9
MsaG035785 AT5G62165.4 46.835 79 42 0 11 89 1 79 1.76e-16 73.9
MsaG035785 AT5G51860.2 47.368 76 40 0 11 86 1 76 1.79e-16 73.9
MsaG035785 AT5G62165.3 46.835 79 42 0 11 89 1 79 1.82e-16 73.9
MsaG035785 AT5G62165.1 46.835 79 42 0 11 89 1 79 1.82e-16 73.9
MsaG035785 AT5G62165.2 46.835 79 42 0 11 89 1 79 1.82e-16 73.9
MsaG035785 AT2G45660.2 38.793 116 59 3 11 119 1 111 2.00e-16 72.8
MsaG035785 AT5G13790.2 44.706 85 45 1 11 95 1 83 2.06e-16 75.1
MsaG035785 AT3G57390.3 44.048 84 47 0 11 94 1 84 2.43e-16 73.9
MsaG035785 AT5G51860.1 47.368 76 40 0 11 86 1 76 2.58e-16 73.6
MsaG035785 AT5G13790.1 50.725 69 34 0 11 79 1 69 3.05e-16 74.3
MsaG035785 AT4G18960.1 51.351 74 28 1 12 85 18 83 3.09e-16 74.3
MsaG035785 AT5G51870.1 47.368 76 40 0 11 86 1 76 3.23e-16 73.6
MsaG035785 AT5G51870.2 47.368 76 40 0 11 86 1 76 3.50e-16 72.4
MsaG035785 AT5G23260.4 32.353 170 95 5 6 172 12 164 3.67e-16 74.3
MsaG035785 AT4G24540.1 31.953 169 97 4 11 167 1 163 3.69e-16 73.6
MsaG035785 AT2G45650.1 49.275 69 35 0 11 79 1 69 3.91e-16 73.9
MsaG035785 AT4G37940.4 44.000 75 42 0 11 85 1 75 5.07e-16 73.2
MsaG035785 AT5G23260.3 29.936 157 95 3 11 163 1 146 5.17e-16 73.6
MsaG035785 AT4G37940.1 44.000 75 42 0 11 85 1 75 5.42e-16 73.2
MsaG035785 AT3G57390.1 44.048 84 47 0 11 94 1 84 5.61e-16 73.6
MsaG035785 AT5G23260.1 46.753 77 39 1 6 80 12 88 5.70e-16 73.6
MsaG035785 AT3G58780.3 34.307 137 65 4 9 124 14 146 5.79e-16 73.9
MsaG035785 AT5G51870.4 47.368 76 40 0 11 86 1 76 6.84e-16 72.8
MsaG035785 AT4G37940.3 44.000 75 42 0 11 85 1 75 7.21e-16 71.6
MsaG035785 AT5G51870.3 46.753 77 41 0 10 86 10 86 7.28e-16 72.8
MsaG035785 AT2G45660.1 38.793 116 59 3 11 119 1 111 7.29e-16 72.4
MsaG035785 AT3G61120.1 45.070 71 39 0 11 81 1 71 1.71e-15 72.0
MsaG035785 AT5G23260.2 32.727 165 91 5 11 172 1 148 2.58e-15 71.6
MsaG035785 AT2G22540.3 47.826 69 36 0 11 79 1 69 3.42e-15 71.2
MsaG035785 AT2G22540.1 47.826 69 36 0 11 79 1 69 3.42e-15 71.2
MsaG035785 AT4G11880.2 51.613 62 30 0 11 72 1 62 3.46e-15 70.1
MsaG035785 AT4G11880.3 51.613 62 30 0 11 72 1 62 3.46e-15 70.1
MsaG035785 AT2G22630.1 48.000 75 31 1 11 85 1 67 3.46e-15 70.9
MsaG035785 AT2G22630.2 48.000 75 31 1 11 85 1 67 3.46e-15 70.9
MsaG035785 AT5G65070.4 44.286 70 38 1 11 79 1 70 5.63e-15 68.6
MsaG035785 AT5G65070.1 44.286 70 38 1 11 79 1 70 7.67e-15 69.7
MsaG035785 AT4G11880.4 55.172 58 26 0 11 68 1 58 8.02e-15 70.1
MsaG035785 AT4G11880.1 55.172 58 26 0 11 68 1 58 8.02e-15 70.1
MsaG035785 AT2G03710.3 54.386 57 26 0 11 67 1 57 8.34e-15 69.3
MsaG035785 AT2G22540.2 54.545 55 25 0 11 65 1 55 1.18e-14 69.7
MsaG035785 AT1G24260.1 54.386 57 26 0 11 67 1 57 1.20e-14 70.1
MsaG035785 AT2G03710.1 54.386 57 26 0 11 67 1 57 1.21e-14 70.1
MsaG035785 AT2G03710.2 54.386 57 26 0 11 67 1 57 1.22e-14 70.1
MsaG035785 AT1G24260.2 54.386 57 26 0 11 67 1 57 1.24e-14 69.7
MsaG035785 AT1G24260.3 54.386 57 26 0 11 67 1 57 1.35e-14 69.7
MsaG035785 AT5G15800.1 54.386 57 26 0 11 67 1 57 1.41e-14 69.7
MsaG035785 AT1G47760.1 48.485 66 34 0 11 76 1 66 1.71e-14 68.2
MsaG035785 AT5G65050.2 49.180 61 31 0 11 71 1 61 2.05e-14 68.2
MsaG035785 AT3G02310.2 54.386 57 26 0 11 67 1 57 2.19e-14 68.6
MsaG035785 AT5G65070.2 44.286 70 38 1 11 79 1 70 2.31e-14 68.9
MsaG035785 AT5G65070.5 44.286 70 38 1 11 79 1 70 2.82e-14 68.2
MsaG035785 AT5G15800.2 54.386 57 26 0 11 67 1 57 3.00e-14 68.9
MsaG035785 AT5G65070.3 45.312 64 35 0 11 74 1 64 3.35e-14 68.6
MsaG035785 AT3G02310.1 54.386 57 26 0 11 67 1 57 5.03e-14 68.2
MsaG035785 AT5G65050.3 49.180 61 31 0 11 71 1 61 6.60e-14 67.0
MsaG035785 AT5G65050.5 49.180 61 31 0 11 71 1 61 6.95e-14 66.6
MsaG035785 AT5G65050.1 49.180 61 31 0 11 71 1 61 7.46e-14 66.6
MsaG035785 AT1G69120.2 48.276 58 30 0 11 68 1 58 7.63e-14 67.4
MsaG035785 AT5G60910.1 52.727 55 26 0 11 65 1 55 8.01e-14 67.4
MsaG035785 AT2G14210.1 48.276 58 30 0 11 68 1 58 8.03e-14 67.4
MsaG035785 AT1G26310.1 50.000 58 29 0 11 68 1 58 8.57e-14 67.8
MsaG035785 AT2G14210.2 48.276 58 30 0 11 68 1 58 1.09e-13 67.0
MsaG035785 AT3G30260.1 50.909 55 27 0 11 65 1 55 1.47e-13 67.0
MsaG035785 AT5G65060.3 47.541 61 32 0 11 71 1 61 1.53e-13 65.9
MsaG035785 AT1G69120.1 48.276 58 30 0 11 68 1 58 2.09e-13 66.6
MsaG035785 AT5G65060.1 47.541 61 32 0 11 71 1 61 2.10e-13 65.5
MsaG035785 AT1G71692.1 32.000 125 82 3 11 133 1 124 2.36e-13 65.9
MsaG035785 AT5G65060.2 47.541 61 32 0 11 71 1 61 2.41e-13 65.5
MsaG035785 AT5G65080.2 31.707 164 95 4 6 169 3 149 3.38e-13 65.1
MsaG035785 AT4G37435.1 49.123 57 29 0 11 67 1 57 8.33e-13 63.9
MsaG035785 AT5G65080.3 31.447 159 93 5 11 169 8 150 1.34e-12 63.5
MsaG035785 AT1G31140.1 36.036 111 69 2 11 120 1 110 2.78e-12 62.8
MsaG035785 AT1G69540.1 24.309 181 115 6 11 170 1 180 3.71e-12 63.9
MsaG035785 AT1G69540.2 24.309 181 115 6 11 170 1 180 7.12e-12 63.2
MsaG035785 AT1G18750.1 26.380 163 80 4 11 161 1 135 1.05e-11 62.8
MsaG035785 AT1G18750.4 43.860 57 32 0 11 67 1 57 1.08e-11 62.4
MsaG035785 AT1G18750.3 43.860 57 32 0 11 67 1 57 1.36e-11 62.4
MsaG035785 AT5G49490.1 36.047 86 51 1 1 82 34 119 1.46e-11 61.6
MsaG035785 AT2G26320.1 44.262 61 34 0 8 68 14 74 2.42e-11 58.2
MsaG035785 AT1G31140.2 38.710 93 52 2 11 98 1 93 3.11e-11 60.1
MsaG035785 AT5G49420.1 28.994 169 90 5 8 169 3 148 3.48e-11 60.8
MsaG035785 AT2G03060.3 44.068 59 32 1 11 68 1 59 4.59e-11 60.8
MsaG035785 AT2G03060.7 44.068 59 32 1 11 68 1 59 4.59e-11 60.8
MsaG035785 AT2G03060.1 44.068 59 32 1 11 68 1 59 4.59e-11 60.8
MsaG035785 AT2G03060.2 44.068 59 32 1 11 68 1 59 4.94e-11 60.8

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAGCTTGAACAATTTA+TGG 0.184700 7:-20989105 MsaT035785.1:CDS
GCCCCATGTTCTTCTTTCTT+TGG 0.236667 7:+20989522 None:intergenic
GGTGACAAACTTTACTGTTT+TGG 0.272165 7:-20989356 MsaT035785.1:CDS
TTTCACCATCACCATGGATA+TGG 0.310081 7:-20989549 None:intergenic
ACTAGAAGATGTTCAAAATA+TGG 0.311297 7:-20989183 MsaT035785.1:CDS
CTTCCTCCTTAACTCGTAAA+TGG 0.312319 7:+20989079 None:intergenic
CCTTCTTGATCTCAATCTTC+TGG 0.316747 7:+20989498 None:intergenic
TGGTGTCCATTTACGAGTTA+AGG 0.353042 7:-20989085 MsaT035785.1:CDS
TGAGAAAGTGACAAGTTTGT+TGG 0.353316 7:+20989463 None:intergenic
CAAAGGAACCACTGAGTTTG+AGG 0.448124 7:-20989297 MsaT035785.1:CDS
TTCCTTTGACGTAGCTATTG+AGG 0.468952 7:+20989312 None:intergenic
AAGGAGGAAGCTTGTTGAAA+GGG 0.480405 7:-20989066 MsaT035785.1:CDS
TTGAGGACAACGTTAGTGTC+GGG 0.518814 7:+20989329 None:intergenic
AGATATTCAACAAGGGTGAC+TGG 0.521786 7:-20989157 MsaT035785.1:CDS
AGATTACAATAGACAATATG+AGG 0.522743 7:-20989240 MsaT035785.1:CDS
TCTTTGGTTAACCATATCCA+TGG 0.535708 7:+20989538 None:intergenic
TAAGGAGGAAGCTTGTTGAA+AGG 0.551823 7:-20989067 MsaT035785.1:CDS
CTATTGTAATCTTTGCAAGT+CGG 0.565418 7:+20989251 None:intergenic
ATTGAGGACAACGTTAGTGT+CGG 0.575860 7:+20989328 None:intergenic
ACCAGGGGAAAACACAATGA+TGG 0.576978 7:+20989376 None:intergenic
GTCCTCAATAGCTACGTCAA+AGG 0.585254 7:-20989314 MsaT035785.1:CDS
AACAGTAAAGTTTGTCACCA+GGG 0.588561 7:+20989360 None:intergenic
CTTTGAATCCTCAAACTCAG+TGG 0.591334 7:+20989289 None:intergenic
GGCGCAAAAGACGTTGGAGA+CGG 0.599927 7:-20989216 MsaT035785.1:CDS
AACCAAAGAAAGAAGAACAT+GGG 0.601697 7:-20989524 MsaT035785.1:CDS
AAACAGTAAAGTTTGTCACC+AGG 0.603204 7:+20989359 None:intergenic
TGAGGAGGCGCAAAAGACGT+TGG 0.623986 7:-20989222 MsaT035785.1:CDS
TATTCAACAAGGGTGACTGG+TGG 0.630235 7:-20989154 MsaT035785.1:CDS
TGTCCATTTACGAGTTAAGG+AGG 0.631401 7:-20989082 MsaT035785.1:CDS
TATGGCTAAGATATTCAACA+AGG 0.649596 7:-20989165 MsaT035785.1:CDS
CCAGAAGATTGAGATCAAGA+AGG 0.650458 7:-20989498 MsaT035785.1:CDS
TAACCAAAGAAAGAAGAACA+TGG 0.653064 7:-20989525 MsaT035785.1:CDS
ACAGTAAAGTTTGTCACCAG+GGG 0.658943 7:+20989361 None:intergenic
ACCAAAGAAAGAAGAACATG+GGG 0.674096 7:-20989523 MsaT035785.1:CDS
TTACAATAGACAATATGAGG+AGG 0.689166 7:-20989237 MsaT035785.1:CDS
ATGGCTAAGATATTCAACAA+GGG 0.701102 7:-20989164 MsaT035785.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 20989028 20989558 20989028 ID=MsaG035785
Chr7 mRNA 20989028 20989558 20989028 ID=MsaT035785.1;Parent=MsaG035785
Chr7 exon 20989028 20989558 20989028 ID=MsaT035785.1.exon1;Parent=MsaT035785.1
Chr7 CDS 20989028 20989558 20989028 ID=cds.MsaT035785.1;Parent=MsaT035785.1
Gene Sequence

>MsaT035785.1

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGGCGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTTTACTGTTTTGGTCAACCCGACACTAACGTTGTCCTCAATAGCTACGTCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACTGAAAATTTTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCGCAAAAGACGTTGGAGACGGAAAAGAAGAAACTAGAAGATGTTCAAAATATGGCTAAGATATTCAACAAGGGTGACTGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAGGAGGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTCATGCCCTAG
Protein sequence

>MsaT035785.1

MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYVKGTTEFEDSKSTENFPTCKDYNRQYEEAQKTLETEKKKLEDVQNMAKIFNKGDWWNDSIDDMSSDQLEQFMVSIYELRRKLVERADELVMKQSVMP*