AlfalfaGEDB | MsaG035844

M. sativa ssp. caerulea / MsaG035844

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035844	XP_039690635.1	72.414	116	32	0	270	385	605	720	6.23e-47	184
MsaG035844	XP_039690635.1	78.598	271	49	1	1	271	1	262	6.46e-148	449

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035844	sp\|Q9LKR4\|FRS10_ARATH	29.474	190	117	5	97	271	67	254	1.82e-18	91.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035844	tr\|A0A072U7R3\|A0A072U7R3_MEDTR	80.400	250	49	0	1	250	1	250	1.09e-137	405

TFs/TRs:

Gene ID	Type	Classification
MsaG035844	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000190	MsaG035844	0.800234	2.650989e-48	3.603185e-46
MsaG000236	MsaG035844	0.854826	1.835287e-61	1.178257e-58
MsaG000329	MsaG035844	0.837451	9.458158e-57	3.411172e-54
MsaG000458	MsaG035844	0.875201	7.696977e-68	1.116715e-64
MsaG000476	MsaG035844	0.802431	9.454722e-49	1.350769e-46
MsaG000514	MsaG035844	0.808245	5.796741e-50	9.489269e-48
MsaG000707	MsaG035844	0.813084	5.271530e-51	9.711794e-49
MsaG000747	MsaG035844	0.855235	1.398059e-61	9.108774e-59
MsaG001001	MsaG035844	0.813015	5.457483e-51	1.003707e-48
MsaG001660	MsaG035844	0.815091	1.910615e-51	3.701740e-49
MsaG001853	MsaG035844	0.839845	2.292470e-57	8.906220e-55
MsaG002587	MsaG035844	0.813972	3.369802e-51	6.347906e-49
MsaG003192	MsaG035844	0.865961	8.095620e-65	7.947822e-62
MsaG003289	MsaG035844	0.814690	2.342599e-51	4.493033e-49
MsaG003427	MsaG035844	0.806330	1.469195e-49	2.297927e-47
MsaG003649	MsaG035844	0.800118	2.798607e-48	3.793836e-46
MsaG003966	MsaG035844	0.800953	1.894360e-48	2.616942e-46
MsaG004133	MsaG035844	0.844522	1.343129e-58	6.058119e-56
MsaG004185	MsaG035844	0.833885	7.490484e-56	2.426678e-53
MsaG004347	MsaG035844	0.809448	3.213906e-50	5.415978e-48
MsaG004446	MsaG035844	0.824208	1.618184e-53	3.983432e-51
MsaG004538	MsaG035844	0.832173	1.987425e-55	6.124550e-53
MsaG005003	MsaG035844	0.807550	8.133645e-50	1.309379e-47
MsaG005092	MsaG035844	0.842375	4.998980e-58	2.103995e-55
MsaG005218	MsaG035844	0.804260	3.967683e-49	5.913036e-47
MsaG005334	MsaG035844	0.812271	7.922551e-51	1.430295e-48
MsaG005346	MsaG035844	0.826711	4.161269e-54	1.097623e-51
MsaG005354	MsaG035844	0.831819	2.428266e-55	7.406789e-53
MsaG005827	MsaG035844	0.827282	3.043114e-54	8.155745e-52
MsaG005960	MsaG035844	0.803783	4.982097e-49	7.342831e-47
MsaG006133	MsaG035844	0.806901	1.114581e-49	1.766856e-47
MsaG006151	MsaG035844	0.851428	1.707028e-60	9.718614e-58
MsaG006122	MsaG035844	0.871889	9.912134e-67	1.244986e-63
MsaG006221	MsaG035844	0.849348	6.503680e-60	3.447532e-57
MsaG006350	MsaG035844	0.800423	2.427170e-48	3.313192e-46
MsaG006408	MsaG035844	0.807777	7.281466e-50	1.178645e-47
MsaG006469	MsaG035844	0.802945	7.416244e-49	1.072067e-46
MsaG006572	MsaG035844	0.830247	5.881862e-55	1.714276e-52
MsaG006623	MsaG035844	0.821164	8.203514e-53	1.860734e-50
MsaG006625	MsaG035844	0.836677	1.488357e-56	5.242666e-54
MsaG006729	MsaG035844	0.819282	2.203418e-52	4.755378e-50
MsaG006742	MsaG035844	0.831045	3.757818e-55	1.120581e-52
MsaG006778	MsaG035844	0.808154	6.059222e-50	9.897121e-48
MsaG006898	MsaG035844	0.843006	3.404395e-58	1.462110e-55
MsaG007000	MsaG035844	0.872114	8.351970e-67	1.059056e-63
MsaG007092	MsaG035844	0.808660	4.731670e-50	7.823539e-48
MsaG007431	MsaG035844	0.830437	5.287123e-55	1.549340e-52
MsaG007501	MsaG035844	0.806077	1.659939e-49	2.580698e-47
MsaG007502	MsaG035844	0.812879	5.841551e-51	1.070714e-48
MsaG007722	MsaG035844	0.813611	4.041858e-51	7.545275e-49
MsaG008036	MsaG035844	0.850851	2.479787e-60	1.384001e-57
MsaG008085	MsaG035844	0.809250	3.542471e-50	5.940770e-48
MsaG008166	MsaG035844	0.800623	2.210129e-48	3.030667e-46
MsaG009261	MsaG035844	0.807284	9.254895e-50	1.480452e-47
MsaG009477	MsaG035844	0.808114	6.177477e-50	1.008070e-47
MsaG009850	MsaG035844	0.825130	9.834378e-54	2.482687e-51
MsaG010213	MsaG035844	0.835362	3.199049e-56	1.083211e-53
MsaG010768	MsaG035844	0.837236	1.073548e-56	3.846078e-54
MsaG011011	MsaG035844	0.815791	1.337091e-51	2.636958e-49
MsaG011087	MsaG035844	0.805838	1.862463e-49	2.879280e-47
MsaG011406	MsaG035844	0.822045	5.143511e-53	1.194261e-50
MsaG011952	MsaG035844	0.803756	5.046101e-49	7.432617e-47
MsaG012023	MsaG035844	0.810658	1.768802e-50	3.069409e-48
MsaG012037	MsaG035844	0.850318	3.494807e-60	1.914627e-57
MsaG012160	MsaG035844	0.855888	9.037612e-62	6.029120e-59
MsaG012467	MsaG035844	0.839549	2.735586e-57	1.052853e-54
MsaG012671	MsaG035844	0.801709	1.328473e-48	1.866912e-46
MsaG012778	MsaG035844	0.815654	1.433771e-51	2.817942e-49
MsaG015184	MsaG035844	0.841696	7.540537e-58	3.105446e-55
MsaG016571	MsaG035844	0.836711	1.459756e-56	5.147249e-54
MsaG016980	MsaG035844	0.851427	1.708442e-60	9.726239e-58
MsaG017105	MsaG035844	0.844401	1.447451e-58	6.502842e-56
MsaG017150	MsaG035844	0.835027	3.882248e-56	1.301512e-53
MsaG017191	MsaG035844	0.805214	2.514383e-49	3.830949e-47
MsaG017589	MsaG035844	0.825525	7.939535e-54	2.026346e-51
MsaG017690	MsaG035844	0.806467	1.375304e-49	2.158105e-47
MsaG017773	MsaG035844	0.836400	1.749701e-56	6.112601e-54
MsaG018245	MsaG035844	0.810189	2.230540e-50	3.826651e-48
MsaG018290	MsaG035844	0.834969	4.013309e-56	1.343039e-53
MsaG018577	MsaG035844	0.840363	1.682489e-57	6.643456e-55
MsaG018588	MsaG035844	0.880293	1.307219e-69	2.391258e-66
MsaG018752	MsaG035844	0.807480	8.416358e-50	1.352623e-47
MsaG018874	MsaG035844	0.821611	6.475904e-53	1.486325e-50
MsaG019018	MsaG035844	0.802293	1.009089e-48	1.437115e-46
MsaG019265	MsaG035844	0.801792	1.277589e-48	1.798821e-46
MsaG019296	MsaG035844	0.891976	5.381725e-74	1.760338e-70
MsaG019615	MsaG035844	0.813330	4.656667e-51	8.631846e-49
MsaG019724	MsaG035844	0.853109	5.703275e-61	3.444828e-58
MsaG019978	MsaG035844	0.824032	1.779193e-53	4.358987e-51
MsaG020030	MsaG035844	0.866025	7.729302e-65	7.607823e-62
MsaG020296	MsaG035844	0.849354	6.482501e-60	3.436945e-57
MsaG020353	MsaG035844	0.880949	7.625192e-70	1.438778e-66
MsaG020338	MsaG035844	0.825775	6.929692e-54	1.780907e-51
MsaG020402	MsaG035844	0.834635	4.867932e-56	1.612889e-53
MsaG020467	MsaG035844	0.802441	9.409206e-49	1.344584e-46
MsaG020747	MsaG035844	0.850828	2.516856e-60	1.403595e-57
MsaG020765	MsaG035844	0.803700	5.182849e-49	7.624173e-47
MsaG021105	MsaG035844	0.884365	4.382132e-71	9.731268e-68
MsaG021516	MsaG035844	0.815393	1.637624e-51	3.197371e-49
MsaG021665	MsaG035844	0.845107	9.356387e-59	4.302589e-56
MsaG021775	MsaG035844	0.805333	2.373917e-49	3.626944e-47
MsaG021845	MsaG035844	0.827397	2.856892e-54	7.681394e-52
MsaG021973	MsaG035844	0.817205	6.471430e-52	1.323398e-49
MsaG022116	MsaG035844	0.822985	3.117200e-53	7.423540e-51
MsaG022633	MsaG035844	0.813410	4.474614e-51	8.311064e-49
MsaG022895	MsaG035844	0.800443	2.404121e-48	3.283257e-46
MsaG023475	MsaG035844	0.804546	3.460881e-49	5.191988e-47
MsaG024222	MsaG035844	0.812292	7.841959e-51	1.416459e-48
MsaG024287	MsaG035844	0.809624	2.946829e-50	4.986922e-48
MsaG024546	MsaG035844	0.820535	1.142569e-52	2.548780e-50
MsaG025732	MsaG035844	0.811422	1.210438e-50	2.140135e-48
MsaG026841	MsaG035844	0.814921	2.083031e-51	4.018621e-49
MsaG026929	MsaG035844	0.804587	3.393908e-49	5.096217e-47
MsaG026967	MsaG035844	0.862952	6.980087e-64	6.080307e-61
MsaG027243	MsaG035844	0.825414	8.433146e-54	2.145570e-51
MsaG027494	MsaG035844	0.804536	3.477827e-49	5.216136e-47
MsaG027661	MsaG035844	0.821555	6.671553e-53	1.528937e-50
MsaG027663	MsaG035844	0.815088	1.913101e-51	3.706341e-49
MsaG027775	MsaG035844	0.827216	3.153913e-54	8.437050e-52
MsaG027819	MsaG035844	0.814340	2.797499e-51	5.318675e-49
MsaG028142	MsaG035844	0.814498	2.581730e-51	4.927861e-49
MsaG028154	MsaG035844	0.844231	1.607082e-58	7.180235e-56
MsaG028341	MsaG035844	0.825106	9.964483e-54	2.513879e-51
MsaG028451	MsaG035844	0.814057	3.227121e-51	6.092022e-49
MsaG028516	MsaG035844	0.847340	2.321838e-59	1.150008e-56
MsaG028990	MsaG035844	0.806492	1.358424e-49	2.132832e-47
MsaG029211	MsaG035844	0.803231	6.475636e-49	9.423216e-47
MsaG029470	MsaG035844	0.805018	2.761869e-49	4.189010e-47
MsaG029655	MsaG035844	0.820395	1.230196e-52	2.734111e-50
MsaG029901	MsaG035844	0.871383	1.455478e-66	1.788612e-63
MsaG030359	MsaG035844	0.812052	8.842311e-51	1.587702e-48
MsaG031622	MsaG035844	0.812780	6.141108e-51	1.122806e-48
MsaG032128	MsaG035844	0.830515	5.061155e-55	1.486376e-52
MsaG032272	MsaG035844	0.820732	1.030164e-52	2.309909e-50
MsaG032228	MsaG035844	0.809277	3.496084e-50	5.866766e-48
MsaG032422	MsaG035844	0.854638	2.079078e-61	1.325888e-58
MsaG032716	MsaG035844	0.824301	1.538926e-53	3.798092e-51
MsaG033263	MsaG035844	0.801059	1.802586e-48	2.496063e-46
MsaG033519	MsaG035844	0.831318	3.221644e-55	9.682895e-53
MsaG033613	MsaG035844	0.804143	4.196474e-49	6.236940e-47
MsaG033688	MsaG035844	0.802701	8.323992e-49	1.196559e-46
MsaG034131	MsaG035844	0.809866	2.616304e-50	4.453431e-48
MsaG034837	MsaG035844	0.829898	7.148070e-55	2.062650e-52
MsaG034996	MsaG035844	0.822245	4.626658e-53	1.080006e-50
MsaG035190	MsaG035844	0.816852	7.759468e-52	1.572354e-49
MsaG035513	MsaG035844	0.801642	1.371440e-48	1.924370e-46
MsaG035529	MsaG035844	0.843388	2.695868e-58	1.172088e-55
MsaG035660	MsaG035844	0.828567	1.498356e-54	4.163190e-52
MsaG035844	MsaG036337	0.809972	2.482991e-50	4.237307e-48
MsaG035844	MsaG036450	0.803760	5.036908e-49	7.419723e-47
MsaG035844	MsaG036957	0.905864	6.473117e-80	4.701232e-76
MsaG035844	MsaG038030	0.821875	5.628927e-53	1.301045e-50
MsaG035844	MsaG038528	0.816803	7.960814e-52	1.611109e-49
MsaG035844	MsaG040350	0.826078	5.876891e-54	1.523155e-51
MsaG035844	MsaG040379	0.835567	2.839687e-56	9.674891e-54
MsaG035844	MsaG040425	0.832261	1.890541e-55	5.840695e-53
MsaG035844	MsaG040459	0.844138	1.701972e-58	7.581138e-56
MsaG035844	MsaG040733	0.804797	3.070256e-49	4.632735e-47
MsaG035844	MsaG042557	0.840663	1.405320e-57	5.601363e-55
MsaG035844	MsaG043225	0.801684	1.344528e-48	1.888406e-46
MsaG035844	MsaG043350	0.825879	6.550435e-54	1.688345e-51
MsaG035844	MsaG043396	0.834205	6.231504e-56	2.038244e-53
MsaG035844	MsaG043571	0.821010	8.894985e-53	2.009428e-50
MsaG035844	MsaG043803	0.827293	3.023965e-54	8.107076e-52
MsaG035844	MsaG044227	0.819165	2.342779e-52	5.040575e-50
MsaG035844	MsaG044617	0.834470	5.352499e-56	1.764715e-53
MsaG035844	MsaG044623	0.809079	3.853117e-50	6.435417e-48
MsaG035844	MsaG044934	0.812749	6.236296e-51	1.139350e-48
MsaG035844	MsaG044971	0.805295	2.418000e-49	3.690969e-47
MsaG035844	MsaG045060	0.821247	7.851431e-53	1.784748e-50
MsaG035844	MsaG045062	0.851206	1.971295e-60	1.113734e-57
MsaG035844	MsaG045105	0.838605	4.791576e-57	1.790701e-54
MsaG035844	MsaG045200	0.818558	3.213209e-52	6.803877e-50
MsaG035844	MsaG045997	0.841277	9.710807e-58	3.946524e-55
MsaG035844	MsaG046113	0.834145	6.450159e-56	2.105927e-53
MsaG035844	MsaG046247	0.851981	1.191893e-60	6.919914e-58
MsaG035844	MsaG046164	0.846412	4.156615e-59	1.995633e-56
MsaG035844	MsaG046266	0.805758	1.936045e-49	2.987391e-47
MsaG035844	MsaG046277	0.802238	1.035579e-48	1.472939e-46
MsaG035844	MsaG046530	0.816237	1.064375e-51	2.123100e-49
MsaG035844	MsaG046696	0.804484	3.565972e-49	5.341804e-47
MsaG035844	MsaG002575	0.805450	2.244998e-49	3.439257e-47
MsaG035844	MsaG001460	0.816208	1.079811e-51	2.152354e-49
MsaG035844	MsaG002374	0.806102	1.639611e-49	2.550671e-47
MsaG035844	MsaG001949	0.829900	7.137879e-55	2.059863e-52
MsaG035844	MsaG001786	0.892517	3.281169e-74	1.104771e-70
MsaG035844	MsaG009465	0.837515	9.109919e-57	3.291993e-54
MsaG035844	MsaG008854	0.820659	1.070434e-52	2.395594e-50
MsaG035844	MsaG008206	0.818393	3.500363e-52	7.380571e-50
MsaG035844	MsaG010579	0.861951	1.413866e-63	1.184377e-60
MsaG035844	MsaG008455	0.820043	1.479385e-52	3.257529e-50
MsaG035844	MsaG014349	0.806942	1.092718e-49	1.733848e-47
MsaG035844	MsaG012735	0.806428	1.401014e-49	2.196426e-47
MsaG035844	MsaG014177	0.827511	2.681941e-54	7.234135e-52
MsaG035844	MsaG027101	0.829894	7.163384e-55	2.066849e-52
MsaG035844	MsaG027479	0.845041	9.749163e-59	4.473731e-56
MsaG035844	MsaG027109	0.805073	2.690095e-49	4.085245e-47
MsaG035844	MsaG027608	0.863904	3.550631e-64	3.210976e-61
MsaG035844	MsaG028732	0.889280	6.117119e-73	1.736352e-69
MsaG035844	MsaG033233	0.827814	2.270288e-54	6.176267e-52
MsaG035844	MsaG032288	0.834743	4.572613e-56	1.520029e-53
MsaG035844	MsaG031365	0.809134	3.750607e-50	6.272590e-48
MsaG035844	MsaG030190	0.846860	3.139382e-59	1.530104e-56
MsaG035844	MsaG032408	0.809180	3.666861e-50	6.139113e-48
MsaG035844	MsaG033554	0.806205	1.560730e-49	2.433915e-47
MsaG035844	MsaG032134	0.872500	6.220625e-67	8.020480e-64
MsaG035844	MsaG037377	0.840640	1.424849e-57	5.675086e-55
MsaG035844	MsaG035814	0.832377	1.769873e-55	5.486335e-53
MsaG035844	MsaG036784	0.863306	5.432153e-64	4.798192e-61
MsaG035844	MsaG039604	0.803908	4.693859e-49	6.938073e-47
MsaG035844	MsaG034989	0.805319	2.389987e-49	3.650345e-47
MsaG035844	MsaG036358	0.825540	7.873731e-54	2.010347e-51
MsaG035844	MsaG036808	0.819555	1.910151e-52	4.151831e-50
MsaG035844	MsaG040777	0.829244	1.029137e-54	2.914268e-52
MsaG035844	MsaG036671	0.840373	1.672220e-57	6.605166e-55
MsaG035844	MsaG036786	0.822901	3.260775e-53	7.747676e-51
MsaG035844	MsaG040778	0.851615	1.512551e-60	8.667127e-58
MsaG035844	MsaG035918	0.808747	4.534604e-50	7.513622e-48
MsaG035844	MsaG035299	0.829920	7.061902e-55	2.039071e-52
MsaG035844	MsaG042416	0.863139	6.116545e-64	5.367658e-61
MsaG035844	MsaG045038	0.802310	1.001213e-48	1.426455e-46
MsaG035844	MsaG042989	0.834582	5.017043e-56	1.659692e-53
MsaG035844	MsaG041443	0.816138	1.119373e-51	2.227227e-49
MsaG035844	MsaG042299	0.821911	5.523109e-53	1.277797e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035844	MtrunA17_Chr1g0203051	57.721	272	109	1	1	272	1	266	9.45e-103	320
MsaG035844	MtrunA17_Chr8g0389811	42.391	184	88	2	30	196	13	195	3.64e-45	156
MsaG035844	MtrunA17_Chr2g0331371	39.881	168	87	2	34	193	2	163	3.61e-32	122
MsaG035844	MtrunA17_Chr6g0473421	40.000	135	67	2	34	160	2	130	9.87e-28	107
MsaG035844	MtrunA17_Chr2g0287651	29.703	202	136	2	76	273	66	265	3.15e-27	115
MsaG035844	MtrunA17_Chr1g0171741	33.158	190	119	3	33	215	74	262	1.55e-26	107
MsaG035844	MtrunA17_Chr1g0172931	42.727	110	63	0	58	167	49	158	6.84e-22	92.0
MsaG035844	MtrunA17_Chr8g0340801	51.389	72	35	0	196	267	1	72	2.50e-20	85.9
MsaG035844	MtrunA17_Chr2g0290391	31.169	154	102	3	97	247	63	215	1.38e-17	85.5
MsaG035844	MtrunA17_Chr1g0198761	30.556	180	108	6	61	224	16	194	9.74e-16	79.7
MsaG035844	MtrunA17_Chr2g0276841	35.433	127	77	4	97	219	82	207	6.62e-14	73.9
MsaG035844	MtrunA17_Chr8g0366311	47.458	59	31	0	58	116	52	110	2.23e-12	63.5
MsaG035844	MtrunA17_Chr7g0228061	44.828	87	43	3	373	455	5	90	4.03e-12	62.4
MsaG035844	MtrunA17_Chr5g0448761	26.882	186	127	4	91	270	66	248	1.63e-11	66.6
MsaG035844	MtrunA17_Chr5g0431001	30.435	138	86	3	96	224	72	208	2.16e-11	65.9
MsaG035844	MtrunA17_Chr6g0458391	25.131	191	113	7	97	261	103	289	3.05e-11	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035844	AT5G28530.4	32.374	139	91	2	97	233	67	204	1.72e-19	91.7
MsaG035844	AT5G28530.1	29.474	190	117	5	97	271	67	254	1.85e-19	91.7
MsaG035844	AT5G28530.3	29.474	190	117	5	97	271	67	254	1.87e-19	91.7
MsaG035844	AT5G28530.2	29.474	190	117	5	97	271	67	254	1.87e-19	91.7
MsaG035844	AT5G28530.5	32.374	139	91	2	97	233	67	204	2.04e-19	91.7
MsaG035844	AT1G10240.2	30.851	188	110	9	97	273	60	238	7.24e-13	71.2
MsaG035844	AT1G10240.1	30.851	188	110	9	97	273	60	238	7.24e-13	71.2

Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATTGCATCTTTAGCACTTT+TGG	0.220681	7:+22535032	None:intergenic
CGTTCCATCACAACAGTTTC+CGG	0.225407	7:+22535060	None:intergenic
CCTCCACATACTCCACATTT+AGG	0.288554	7:+22534688	None:intergenic
CTTTCCTCATTGCTTTCATT+TGG	0.313855	7:+22536312	None:intergenic
TTTGTCATAGAGAAGGTTTC+CGG	0.338339	7:-22536547	MsaT035844.1:CDS
CCAGCGACGGGGAGAAGTTT+AGG	0.341691	7:-22534796	MsaT035844.1:CDS
CCTTGAGAAAATTAATTTCA+AGG	0.345881	7:-22536723	MsaT035844.1:CDS
TTTGGTGTGGGTCCAGCGAC+GGG	0.348536	7:-22534808	MsaT035844.1:CDS
ATTCCTACGTCACGTATCTA+TGG	0.365780	7:-22536284	MsaT035844.1:CDS
GCGTTCCTCGGATGATGATA+TGG	0.366309	7:-22536813	MsaT035844.1:CDS
GGTTGTGTGCACGGATTTGC+CGG	0.389576	7:-22536626	MsaT035844.1:CDS
AGCTAGTAGGTGTGGGTGTA+TGG	0.394921	7:-22536477	MsaT035844.1:CDS
TATACACAAAACCATTGAAA+TGG	0.395440	7:-22534887	MsaT035844.1:CDS
TATGAACATAAGAAAATTGC+CGG	0.401136	7:-22535079	MsaT035844.1:CDS
CTTGGACAGTGGCTCTTCTT+CGG	0.429033	7:-22536846	MsaT035844.1:CDS
TTGTCATAGAGAAGGTTTCC+GGG	0.431471	7:-22536546	MsaT035844.1:CDS
CTCAGAAACTGATTATGAAC+AGG	0.434115	7:-22534614	MsaT035844.1:CDS
ATCCCGGTGACTTGAACTAT+TGG	0.441196	7:+22534996	None:intergenic
TCAAATGTGAGCAACATAAC+GGG	0.446705	7:-22537029	MsaT035844.1:CDS
GTTTGGTGTGGGTCCAGCGA+CGG	0.454406	7:-22534809	MsaT035844.1:CDS
CTTGAATTGCTCATTGTACA+TGG	0.461269	7:+22536208	None:intergenic
TGTGGAGTATGTGGAGGAAA+GGG	0.464409	7:-22534682	MsaT035844.1:CDS
GGTCAAGTTGATGAGGTGTT+TGG	0.465868	7:-22534826	MsaT035844.1:CDS
AACTACGTATGTTATGTTTG+TGG	0.474919	7:-22534962	MsaT035844.1:CDS
TGCATTTCGAGTTGAAGAAT+CGG	0.477767	7:+22534735	None:intergenic
TAGGTAATCCGCAGCGGCGT+AGG	0.486624	7:-22534777	MsaT035844.1:CDS
GCTGGTGGATTCAGACATCT+AGG	0.489368	7:-22536245	MsaT035844.1:CDS
TTTATGATGACAATGACGAT+TGG	0.491653	7:-22534588	MsaT035844.1:CDS
TCACTCATCTTTCTATGTGC+AGG	0.492964	7:+22536347	None:intergenic
GAGAGCAGAAGCCAGCTAGT+AGG	0.495906	7:-22536490	MsaT035844.1:CDS
CCTAAACTTCTCCCCGTCGC+TGG	0.500888	7:+22534796	None:intergenic
TTCAAATGTGAGCAACATAA+CGG	0.501010	7:-22537030	MsaT035844.1:CDS
GGAAAGTGTCGTGCGTTCCT+CGG	0.501486	7:-22536825	MsaT035844.1:CDS
ATGAAAGCAATGAGGAAAGC+TGG	0.503092	7:-22536308	MsaT035844.1:CDS
TGACGATTGGAACGTTCCTA+TGG	0.504057	7:-22534575	MsaT035844.1:intron
GACACGTACAATTCGACGTA+TGG	0.507400	7:-22536788	MsaT035844.1:CDS
ATGCCAATAGTTCAAGTCAC+CGG	0.516528	7:-22534999	MsaT035844.1:CDS
CCGCAGCGGCGTAGGAAAAG+AGG	0.517276	7:-22534769	MsaT035844.1:CDS
CAGAAGCCAGCTAGTAGGTG+TGG	0.527642	7:-22536485	MsaT035844.1:CDS
ATGTGGAGTATGTGGAGGAA+AGG	0.529949	7:-22534683	MsaT035844.1:CDS
TATTGTCATTCCTTGCATCC+CGG	0.530083	7:+22536528	None:intergenic
ACAATGAGCAATTCAAGGAT+AGG	0.534325	7:-22536202	MsaT035844.1:CDS
ACGCCTAAATGTGGAGTATG+TGG	0.534842	7:-22534691	MsaT035844.1:CDS
CAATGAGCAATTCAAGGATA+GGG	0.537667	7:-22536201	MsaT035844.1:CDS
AACAACACGGGATCTTCTAC+CGG	0.539063	7:+22536607	None:intergenic
CATGTACAATGAGCAATTCA+AGG	0.539489	7:-22536207	MsaT035844.1:CDS
GTTGATGAGGTGTTTGGTGT+GGG	0.541519	7:-22534820	MsaT035844.1:CDS
ACCTTTGTTTGTCATAGAGA+AGG	0.542041	7:-22536554	MsaT035844.1:CDS
GGAAGCAATTGAATTTCTGA+AGG	0.545431	7:-22536156	MsaT035844.1:CDS
AATAGGTACGGTTGTGTGCA+CGG	0.547142	7:-22536635	MsaT035844.1:CDS
GACGAAGAGTTCTGATGCAG+AGG	0.547324	7:-22536177	MsaT035844.1:CDS
GAAGGCATCGTAGGTGTGGA+AGG	0.550437	7:-22537005	MsaT035844.1:CDS
AGTTGATGAGGTGTTTGGTG+TGG	0.553811	7:-22534821	MsaT035844.1:CDS
ACATACGTAGTTACAAAAGC+AGG	0.568046	7:+22534973	None:intergenic
TAGTTACAAAAGCAGGATCC+CGG	0.574230	7:+22534980	None:intergenic
GAAGCAATTGAATTTCTGAA+GGG	0.574630	7:-22536155	MsaT035844.1:CDS
ATTCAAGTTCACGTTGACTA+CGG	0.576810	7:-22536449	MsaT035844.1:CDS
CGTAGGTGTGGAAGGTTCAG+AGG	0.578719	7:-22536997	MsaT035844.1:intron
GACATCTAGGATATTCAAGA+AGG	0.580326	7:-22536232	MsaT035844.1:CDS
AGAAGCCAGCTAGTAGGTGT+GGG	0.582078	7:-22536484	MsaT035844.1:CDS
TGCCAATAGTTCAAGTCACC+GGG	0.582672	7:-22534998	MsaT035844.1:CDS
GAGAAGGTTTCCGGGATGCA+AGG	0.585476	7:-22536538	MsaT035844.1:CDS
GTGTCATGTCGGTTCCGTCA+CGG	0.585630	7:-22534649	MsaT035844.1:CDS
ACACGTACAATTCGACGTAT+GGG	0.592382	7:-22536787	MsaT035844.1:CDS
ATTGCCGGAAACTGTTGTGA+TGG	0.595496	7:-22535064	MsaT035844.1:CDS
AGTCTATAGTTGCTCCGTGA+CGG	0.595691	7:+22534635	None:intergenic
AAACGGAACACGCCTAAATG+TGG	0.598130	7:-22534700	MsaT035844.1:CDS
ATTCTACAGGACTTGGACAG+TGG	0.602899	7:-22536857	MsaT035844.1:intron
TGGATTGCCACACTTTAACA+TGG	0.603575	7:+22534915	None:intergenic
GACATTGGAATCATTCAACA+TGG	0.604480	7:-22534848	MsaT035844.1:CDS
CATGCTTGTTCTTAACAACA+CGG	0.605806	7:+22536594	None:intergenic
TGTGGAGCGTTGCAAGAGGA+TGG	0.606817	7:-22534944	MsaT035844.1:CDS
ATACACCCACACCTACTAGC+TGG	0.608717	7:+22536479	None:intergenic
CGTGTTGTTAAGAACAAGCA+TGG	0.609169	7:-22536593	MsaT035844.1:CDS
CAACATGGGTCAAGTTGATG+AGG	0.613553	7:-22534833	MsaT035844.1:CDS
CAAATGTGAGCAACATAACG+GGG	0.613878	7:-22537028	MsaT035844.1:CDS
ACCTTCTCTATGACAAACAA+AGG	0.615884	7:+22536553	None:intergenic
AAGCAATTGAATTTCTGAAG+GGG	0.619311	7:-22536154	MsaT035844.1:CDS
ATGCTTGTTCTTAACAACAC+GGG	0.628391	7:+22536595	None:intergenic
TTGGTGTGGGTCCAGCGACG+GGG	0.643872	7:-22534807	MsaT035844.1:CDS
GTCACAACCGCGTGTCATGT+CGG	0.644843	7:-22534660	MsaT035844.1:CDS
GTCTTCCATATCATCATCCG+AGG	0.646493	7:+22536808	None:intergenic
GCAAACGCCATGTTAAAGTG+TGG	0.657355	7:-22534922	MsaT035844.1:CDS
TGTTTGTGGAGCGTTGCAAG+AGG	0.662336	7:-22534948	MsaT035844.1:CDS
CAGCGGCGTAGGAAAAGAGG+CGG	0.664927	7:-22534766	MsaT035844.1:CDS
GACGGAACCGACATGACACG+CGG	0.668500	7:+22534653	None:intergenic
AATACCAAATGAAAGCAATG+AGG	0.671984	7:-22536316	MsaT035844.1:CDS
CCTAAATGTGGAGTATGTGG+AGG	0.673219	7:-22534688	MsaT035844.1:CDS
ACGTTGACTACGGTAGTGAA+CGG	0.682166	7:-22536439	MsaT035844.1:CDS
AAACTGTTGTGATGGAACGA+TGG	0.688506	7:-22535056	MsaT035844.1:CDS
AAACCATAGATACGTGACGT+AGG	0.700125	7:+22536281	None:intergenic
ACATTGGAATCATTCAACAT+GGG	0.703646	7:-22534847	MsaT035844.1:CDS
GAAGTTTAGGTAATCCGCAG+CGG	0.723333	7:-22534783	MsaT035844.1:CDS
AAATGTGAGCAACATAACGG+GGG	0.740353	7:-22537027	MsaT035844.1:CDS
TTGACTACGGTAGTGAACGG+TGG	0.752541	7:-22536436	MsaT035844.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	22534466	22537087	22534466	ID=MsaG035844
Chr7	mRNA	22534466	22537087	22534466	ID=MsaT035844.1;Parent=MsaG035844
Chr7	exon	22534466	22534486	22534466	ID=MsaT035844.1.exon4;Parent=MsaT035844.1
Chr7	CDS	22534466	22534486	22534466	ID=cds.MsaT035844.1;Parent=MsaT035844.1
Chr7	exon	22534576	22535114	22534576	ID=MsaT035844.1.exon3;Parent=MsaT035844.1
Chr7	CDS	22534576	22535114	22534576	ID=cds.MsaT035844.1;Parent=MsaT035844.1
Chr7	exon	22536147	22536870	22536147	ID=MsaT035844.1.exon2;Parent=MsaT035844.1
Chr7	CDS	22536147	22536870	22536147	ID=cds.MsaT035844.1;Parent=MsaT035844.1
Chr7	exon	22536998	22537087	22536998	ID=MsaT035844.1.exon1;Parent=MsaT035844.1
Chr7	CDS	22536998	22537087	22536998	ID=cds.MsaT035844.1;Parent=MsaT035844.1

Gene Sequence

>MsaT035844.1

ATGGATATGAGTGAAATTCTTGAAATTTTTCAAGTTTCAAATGTGAGCAACATAACGGGGGAAGGCATCGTAGGTGTGGAAGGTTCAGAGGACTTGGACAGTGGCTCTTCTTCGGAAAGTGTCGTGCGTTCCTCGGATGATGATATGGAAGACACGTACAATTCGACGTATGGGTGCAGTTTTGATGATGAATTTGCGGTTGATTGCATGACTGACCTTGAGAAAATTAATTTCAAGGAATTAAGTTATGATGACTTTATGATGTACCATTTTTCGGATCGTCTAGTTGCATTCAAGTTTTACAATAGGTACGGTTGTGTGCACGGATTTGCCGGTAGAAGATCCCGTGTTGTTAAGAACAAGCATGGCGATGCTATTCAACAAACCTTTGTTTGTCATAGAGAAGGTTTCCGGGATGCAAGGAATGACAATAATCCGTCTAGAAAAAGAGAGCAGAAGCCAGCTAGTAGGTGTGGGTGTATGGCAAGAATTCAAGTTCACGTTGACTACGGTAGTGAACGGTGGTACATAAAAATGTTTGACGATGTTCATAATCACTCATTTTTGGATAATAAGTATGAGGGGATGCTACCTGCACATAGAAAGATGAGTGATTATGACAAATACCAAATGAAAGCAATGAGGAAAGCTGGCATTCCTACGTCACGTATCTATGGTTTTTTTGCTTCACAAGCTGGTGGATTCAGACATCTAGGATATTCAAGAAGGACCATGTACAATGAGCAATTCAAGGATAGGGAGACGAAGAGTTCTGATGCAGAGGAAGCAATTGAATTTCTGAAGGGGTTGTCTAGTGTTTTAGTGCATATGAACATAAGAAAATTGCCGGAAACTGTTGTGATGGAACGATGGACCAAAAGTGCTAAAGATGCAATCAATGCACAAAATGCCAATAGTTCAAGTCACCGGGATCCTGCTTTTGTAACTACGTATGTTATGTTTGTGGAGCGTTGCAAGAGGATGGCAAACGCCATGTTAAAGTGTGGCAATCCAGATTATATACACAAAACCATTGAAATGGTTGAAAAACACACTGAGACATTGGAATCATTCAACATGGGTCAAGTTGATGAGGTGTTTGGTGTGGGTCCAGCGACGGGGAGAAGTTTAGGTAATCCGCAGCGGCGTAGGAAAAGAGGCGGAGCAACAGCCGATTCTTCAACTCGAAATGCAAATGCGAAGAAAAAACGGAACACGCCTAAATGTGGAGTATGTGGAGGAAAGGGTCACAACCGCGTGTCATGTCGGTTCCGTCACGGAGCAACTATAGACTCAGAAACTGATTATGAACAGGAATTTTATGATGACAATGACGATTGGAACGTTCCTATGGAGGACTTGAATTACGTGTGA

Protein sequence

>MsaT035844.1

MDMSEILEIFQVSNVSNITGEGIVGVEGSEDLDSGSSSESVVRSSDDDMEDTYNSTYGCSFDDEFAVDCMTDLEKINFKELSYDDFMMYHFSDRLVAFKFYNRYGCVHGFAGRRSRVVKNKHGDAIQQTFVCHREGFRDARNDNNPSRKREQKPASRCGCMARIQVHVDYGSERWYIKMFDDVHNHSFLDNKYEGMLPAHRKMSDYDKYQMKAMRKAGIPTSRIYGFFASQAGGFRHLGYSRRTMYNEQFKDRETKSSDAEEAIEFLKGLSSVLVHMNIRKLPETVVMERWTKSAKDAINAQNANSSSHRDPAFVTTYVMFVERCKRMANAMLKCGNPDYIHKTIEMVEKHTETLESFNMGQVDEVFGVGPATGRSLGNPQRRRKRGGATADSSTRNANAKKKRNTPKCGVCGGKGHNRVSCRFRHGATIDSETDYEQEFYDDNDDWNVPMEDLNYV*