AlfalfaGEDB | MsaG035879

M. sativa ssp. caerulea / MsaG035879

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035879	XP_013447750.1	91.225	604	27	3	171	774	172	749	0.0	1108

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035879	sp\|Q9C660\|PEK10_ARATH	61.605	461	146	6	297	755	330	761	0.0	590

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035879	tr\|A0A072U7M3\|A0A072U7M3_MEDTR	91.225	604	27	3	171	774	172	749	0.0	1108

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035879	MtrunA17_Chr7g0221191	91.225	604	27	3	171	774	172	749	0.0	1108
MsaG035879	MtrunA17_Chr0c01g0489481	60.814	467	150	7	281	745	218	653	0.0	541
MsaG035879	MtrunA17_Chr5g0413511	60.053	378	125	2	385	762	47	398	6.68e-166	484
MsaG035879	MtrunA17_Chr6g0485761	56.456	395	138	3	380	766	278	646	4.15e-155	467
MsaG035879	MtrunA17_Chr3g0144481	55.319	376	131	5	381	742	73	425	5.33e-144	431
MsaG035879	MtrunA17_Chr8g0373501	40.444	675	299	17	134	735	18	662	1.64e-142	434
MsaG035879	MtrunA17_Chr6g0485721	53.353	343	135	2	382	724	83	400	1.58e-123	376
MsaG035879	MtrunA17_Chr8g0389251	47.910	311	136	3	384	694	391	675	9.83e-98	317
MsaG035879	MtrunA17_Chr7g0262521	48.105	343	146	5	385	724	334	647	1.26e-96	316
MsaG035879	MtrunA17_Chr8g0341881	45.882	340	153	4	384	723	392	700	3.06e-96	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG035879	AT1G26150.1	61.605	461	146	6	297	755	330	761	0.0	590
MsaG035879	AT1G68690.1	60.684	468	150	8	287	753	271	705	0.0	587
MsaG035879	AT1G68690.3	60.684	468	150	8	287	753	271	705	0.0	587
MsaG035879	AT1G68690.2	60.684	468	150	8	287	753	271	705	0.0	587
MsaG035879	AT1G68690.4	60.644	404	129	5	287	689	271	645	3.39e-174	516
MsaG035879	AT1G52290.1	54.278	374	134	4	370	734	121	466	1.69e-148	444
MsaG035879	AT1G70450.1	59.249	346	119	2	378	723	30	353	6.93e-146	433
MsaG035879	AT3G24540.1	51.294	425	141	6	292	716	121	479	1.62e-145	436
MsaG035879	AT4G34440.2	48.188	469	180	8	313	746	206	646	4.86e-145	441
MsaG035879	AT4G34440.1	48.188	469	180	8	313	746	206	646	4.86e-145	441

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Find 239 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCAGCACCAGATGA+TGG	0.539033	7:+23569376	None:intergenic
AAAATGCACCCGTTCTGAAT+TGG	0.405099	7:-23567023	MsaT035879.1:CDS
AAACAACTTAAAATTGGTGG+TGG	0.581592	7:-23567444	MsaT035879.1:CDS
AACGCAACAGTTGCTGCTGG+TGG	0.620385	7:-23568683	MsaT035879.1:CDS
AACTGAGGAGTGACGCACAC+AGG	0.623362	7:+23564250	None:intergenic
AACTGGAAGCGGAACTATCT+TGG	0.408693	7:+23563974	None:intergenic
AAGTCTGATGTATATTCCTA+CGG	0.575372	7:-23564996	MsaT035879.1:CDS
AATACCTGAATTGTGAGACG+AGG	0.733286	7:+23568409	None:intergenic
AATGCAATAGGAGAACCATT+TGG	0.568378	7:+23569403	None:intergenic
AATGCACCTTCAAATTCAGG+AGG	0.629506	7:-23568575	MsaT035879.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	23563870	23569446	23563870	ID=MsaG035879
Chr7	mRNA	23563870	23569446	23563870	ID=MsaT035879.1;Parent=MsaG035879
Chr7	exon	23563870	23564130	23563870	ID=MsaT035879.1.exon8;Parent=MsaT035879.1
Chr7	CDS	23563870	23564130	23563870	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23564229	23564390	23564229	ID=MsaT035879.1.exon7;Parent=MsaT035879.1
Chr7	CDS	23564229	23564390	23564229	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23564914	23565061	23564914	ID=MsaT035879.1.exon6;Parent=MsaT035879.1
Chr7	CDS	23564914	23565061	23564914	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23566177	23566253	23566177	ID=MsaT035879.1.exon5;Parent=MsaT035879.1
Chr7	CDS	23566177	23566253	23566177	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23566603	23566716	23566603	ID=MsaT035879.1.exon4;Parent=MsaT035879.1
Chr7	CDS	23566603	23566716	23566603	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23566936	23567048	23566936	ID=MsaT035879.1.exon3;Parent=MsaT035879.1
Chr7	CDS	23566936	23567048	23566936	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23567289	23567705	23567289	ID=MsaT035879.1.exon2;Parent=MsaT035879.1
Chr7	CDS	23567289	23567705	23567289	ID=cds.MsaT035879.1;Parent=MsaT035879.1
Chr7	exon	23568414	23569446	23568414	ID=MsaT035879.1.exon1;Parent=MsaT035879.1
Chr7	CDS	23568414	23569446	23568414	ID=cds.MsaT035879.1;Parent=MsaT035879.1

Gene Sequence

>MsaT035879.1

ATGGCTACAATCCCTCTTTCTCCAAATGGTTCTCCTATTGCATTGCCTCCATCATCTGGTGCTGCTGTTTTACCACCTACCACTTCTTCTCAGTCCAATCAAACAGCTAATTCACCACCTCCATCAGTTCCTCCTCTGTCGACGACGGTGCCAATAACTCCTCCTACACCATCTCTTTCTCCTCCTCCACCGTCAACTACACCGCCGCCAACATCTCCACCACCAGCATCATCACCTCCACCAATTGTAACATCACCGCCTCCTGCATCACCAGCTCCACCAGTTGTAACATCACCACCTCCTACACCAGCTGCTACCGCCCCTCCTCCAGCTGAAACTTCACCTTCCATTCCTAATTTGTCTCCACCACCTCCATCAGCTGGTTCCCCTCCTCCTCAACCATCAAAGCCACCTCCTTCTGAATCAGTTTCGCCGTCTCCTCCTCCTCCGGCACCAAAGCCACCATCTACCAAACCTCCTCCTCCTACACCACAAGCAAAGCCACCAAAAAGTAACACTCCTTCACCTCCTTCACATGATGCACCCCCTCCATCAGTTTCTAAATCACCTCCTTCCCCTTCTACTGATGTTCCACCTCCATCTACATTGCCATCTACTCCTCCTTCAGTCCCCTCAGAATCTGCAGCACCTCCTGCAGTCCCTTCAGGATCTGCAGCACCTCCTGCAGTCCCTTCAGGATCTGCGGCACCTCCAGCAGCGTCTTTGCCTCGTCCTCCTAGGAACGCAACAGTTGCTGCTGGTGGTCCAACTGTGTCATTGCCATCTATTCCAACTGAGAAACCAACTGCTAGACCAACTGTTGATGGCTCTGGTAATGCAGCCACAAGCAATGCACCTTCAAATTCAGGAGGGTTAAATACCGGAGGAGCTGTTGCTATTGGCGTCGTTGTTAGTGTAGTTGTCATCAGCCTTCTTGTCATGGCTGTGTTGTTTGTACGGAAGAAAAAGAAGGGAAAAAGACCGATAGCTGATTATGCTGCACCTTCCCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCTCAGCCTCAGTCTCCAGCCAATTTTATAGGGAGTGGCAATGGTAGTGAATTTGTGTATTCACCATCAGAACCAGGTGGTGTAAATAGTTCAAGATCATGGTTCACATATGAAGAGCTTATCCAAGCTACGAACGGATTTTCAGAACAGAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTACAAAGGTTTGCTCATAGATGGGAGAGAAGTAGCTGTGAAACAACTTAAAATTGGTGGTGGACAAGGGGAACGTGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTAGTTTCTTTGGTTGGTTATTGTATATCTGAACATCAAAGATTGCTTGTCTACGACTATGTTCCCAACAATACTCTTCATTATCATCTACATGATGAAAATGCACCCGTTCTGAATTGGCCTATCAGAGTTAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGATTGTAAGTTTATTCTTTTTCCCTCAAGTTATGCTCTATTCATCTTCTTATTTCGATTTGATTATTTTTCTGGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCAAAACTTTGAAGCTCTTGTTTCAGATTTTGGGCTTGCAAAATTAACACTGGATTCAAACACACACGTTACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAATTGACTGATAAGTCTGATGTATATTCCTACGGTGTTGTACTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCAATTGGTGACGAGAGCTTGGTTGAATGGGCTCGGCCTCTGTTGATGGAAGCGCTCAATAGCGAGGACTTTGAAACTTTAGCGGATCCAAGACTAGGAAAGAACTACAATAGAAACGAAATGTTTAGGATGATTGAGGCTGCTGCGGCCTGTGTGCGTCACTCCTCAGTTAAAAGGCCAAAGATGAGTCAGGTTGTGAGAGCTTTCGATTCCATGGACGAGTTTTCAGATCTGAATAACGGAATGATACCGGGACAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAGATCAGAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCCGCTTCCAGTTTCTTTAACGAGTCTCAAAGTAGTTATAGGACTAGGGACCAAGACTCTACAAGTATATTTCCTCAAAATAAATCTAGGTCTTGGAACTTTCGAGATGACGCTTAA

Protein sequence

>MsaT035879.1

MATIPLSPNGSPIALPPSSGAAVLPPTTSSQSNQTANSPPPSVPPLSTTVPITPPTPSLSPPPPSTTPPPTSPPPASSPPPIVTSPPPASPAPPVVTSPPPTPAATAPPPAETSPSIPNLSPPPPSAGSPPPQPSKPPPSESVSPSPPPPAPKPPSTKPPPPTPQAKPPKSNTPSPPSHDAPPPSVSKSPPSPSTDVPPPSTLPSTPPSVPSESAAPPAVPSGSAAPPAVPSGSAAPPAASLPRPPRNATVAAGGPTVSLPSIPTEKPTARPTVDGSGNAATSNAPSNSGGLNTGGAVAIGVVVSVVVISLLVMAVLFVRKKKKGKRPIADYAAPSPFTSSHNSGTLFLKPQPQSPANFIGSGNGSEFVYSPSEPGGVNSSRSWFTYEELIQATNGFSEQNMLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHDENAPVLNWPIRVKVAAGAARGIAYLHEDCKFILFPSSYALFIFLFRFDYFSGHPRIIHRDIKSSNILLDQNFEALVSDFGLAKLTLDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLMEALNSEDFETLADPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPKMSQVVRAFDSMDEFSDLNNGMIPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSASSFFNESQSSYRTRDQDSTSIFPQNKSRSWNFRDDA*