Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035932 | XP_039685680.1 | 90.470 | 766 | 67 | 2 | 1 | 760 | 35 | 800 | 0.0 | 1437 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035932 | sp|Q9SZL8|FRS5_ARATH | 26.374 | 637 | 391 | 15 | 16 | 645 | 72 | 637 | 4.40e-67 | 240 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035932 | tr|D3YBB9|D3YBB9_TRIRP | 79.288 | 787 | 145 | 3 | 3 | 779 | 69 | 847 | 0.0 | 1296 |
Gene ID | Type | Classification |
---|---|---|
MsaG035932 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG035932 | MsaG037007 | 0.843961 | 1.896733e-58 | 8.398988e-56 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035932 | MtrunA17_Chr3g0088371 | 82.199 | 191 | 31 | 1 | 598 | 785 | 1 | 191 | 1.26e-103 | 316 |
MsaG035932 | MtrunA17_Chr2g0324011 | 30.174 | 633 | 368 | 12 | 18 | 645 | 8 | 571 | 2.09e-97 | 314 |
MsaG035932 | MtrunA17_Chr3g0082121 | 33.610 | 482 | 287 | 8 | 23 | 502 | 49 | 499 | 8.16e-85 | 284 |
MsaG035932 | MtrunA17_Chr3g0082121 | 32.692 | 156 | 87 | 6 | 574 | 722 | 529 | 673 | 2.61e-11 | 67.4 |
MsaG035932 | MtrunA17_Chr1g0202341 | 29.088 | 636 | 366 | 16 | 16 | 642 | 50 | 609 | 2.07e-80 | 271 |
MsaG035932 | MtrunA17_Chr8g0363841 | 29.299 | 628 | 371 | 16 | 22 | 645 | 22 | 580 | 1.04e-77 | 264 |
MsaG035932 | MtrunA17_Chr1g0203721 | 25.606 | 742 | 454 | 17 | 1 | 721 | 39 | 703 | 1.70e-71 | 251 |
MsaG035932 | MtrunA17_Chr2g0296781 | 27.093 | 657 | 396 | 16 | 21 | 669 | 1 | 582 | 1.79e-70 | 246 |
MsaG035932 | MtrunA17_Chr5g0448761 | 25.457 | 711 | 457 | 15 | 6 | 708 | 47 | 692 | 8.84e-70 | 244 |
MsaG035932 | MtrunA17_Chr6g0458391 | 26.709 | 629 | 358 | 14 | 23 | 642 | 231 | 765 | 1.57e-67 | 238 |
MsaG035932 | MtrunA17_Chr6g0477261 | 27.984 | 511 | 319 | 10 | 162 | 669 | 7 | 471 | 9.54e-64 | 225 |
MsaG035932 | MtrunA17_Chr1g0164591 | 33.750 | 320 | 197 | 4 | 113 | 430 | 1 | 307 | 1.43e-61 | 210 |
MsaG035932 | MtrunA17_Chr5g0441581 | 25.373 | 670 | 410 | 17 | 5 | 669 | 25 | 609 | 1.04e-60 | 218 |
MsaG035932 | MtrunA17_Chr2g0287651 | 25.678 | 627 | 388 | 12 | 21 | 642 | 79 | 632 | 1.18e-59 | 217 |
MsaG035932 | MtrunA17_Chr2g0329031 | 24.824 | 709 | 431 | 19 | 5 | 703 | 2 | 618 | 6.89e-57 | 207 |
MsaG035932 | MtrunA17_Chr5g0440451 | 24.113 | 705 | 432 | 18 | 16 | 701 | 42 | 662 | 1.52e-54 | 203 |
MsaG035932 | MtrunA17_Chr1g0207551 | 25.000 | 672 | 420 | 15 | 32 | 698 | 49 | 641 | 2.38e-54 | 201 |
MsaG035932 | MtrunA17_Chr7g0258861 | 34.936 | 312 | 179 | 6 | 12 | 318 | 2 | 294 | 3.07e-53 | 187 |
MsaG035932 | MtrunA17_Chr1g0198761 | 27.002 | 637 | 377 | 18 | 18 | 640 | 48 | 610 | 5.25e-53 | 197 |
MsaG035932 | MtrunA17_Chr1g0196541 | 24.920 | 626 | 396 | 15 | 21 | 642 | 1 | 556 | 5.36e-53 | 196 |
MsaG035932 | MtrunA17_Chr3g0118611 | 27.400 | 500 | 307 | 10 | 203 | 699 | 111 | 557 | 8.73e-53 | 196 |
MsaG035932 | MtrunA17_Chr1g0203051 | 23.599 | 589 | 381 | 10 | 32 | 617 | 94 | 616 | 2.54e-51 | 190 |
MsaG035932 | MtrunA17_Chr3g0080351 | 25.289 | 692 | 423 | 18 | 13 | 698 | 72 | 675 | 2.97e-51 | 192 |
MsaG035932 | MtrunA17_Chr1g0172971 | 86.735 | 98 | 13 | 0 | 1 | 98 | 20 | 117 | 4.47e-50 | 184 |
MsaG035932 | MtrunA17_Chr2g0287061 | 25.000 | 628 | 354 | 17 | 23 | 645 | 189 | 704 | 2.17e-48 | 184 |
MsaG035932 | MtrunA17_Chr2g0276841 | 25.832 | 631 | 380 | 18 | 31 | 650 | 84 | 637 | 3.61e-48 | 182 |
MsaG035932 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 370 | 18 | 20 | 640 | 54 | 611 | 1.89e-47 | 179 |
MsaG035932 | MtrunA17_Chr2g0291581 | 24.800 | 625 | 391 | 14 | 20 | 642 | 74 | 621 | 8.99e-44 | 169 |
MsaG035932 | MtrunA17_Chr5g0448511 | 24.470 | 519 | 319 | 12 | 198 | 703 | 1 | 459 | 8.60e-43 | 164 |
MsaG035932 | MtrunA17_Chr2g0291591 | 26.261 | 476 | 298 | 13 | 19 | 481 | 66 | 501 | 2.94e-42 | 162 |
MsaG035932 | MtrunA17_Chr6g0475591 | 93.151 | 73 | 5 | 0 | 170 | 242 | 1 | 73 | 1.62e-41 | 145 |
MsaG035932 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 22 | 455 | 66 | 488 | 3.96e-41 | 158 |
MsaG035932 | MtrunA17_Chr2g0294841 | 26.316 | 627 | 376 | 18 | 23 | 637 | 51 | 603 | 4.33e-40 | 158 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG035932 | AT4G38180.1 | 26.374 | 637 | 391 | 15 | 16 | 645 | 72 | 637 | 4.47e-68 | 240 |
MsaG035932 | AT4G15090.1 | 24.966 | 729 | 465 | 16 | 32 | 753 | 66 | 719 | 4.31e-60 | 218 |
MsaG035932 | AT4G15090.5 | 24.966 | 729 | 465 | 16 | 32 | 753 | 66 | 719 | 4.31e-60 | 218 |
MsaG035932 | AT4G15090.3 | 24.966 | 729 | 465 | 16 | 32 | 753 | 66 | 719 | 4.31e-60 | 218 |
MsaG035932 | AT4G15090.2 | 24.966 | 729 | 465 | 16 | 32 | 753 | 66 | 719 | 4.31e-60 | 218 |
MsaG035932 | AT4G15090.4 | 24.966 | 729 | 465 | 16 | 32 | 753 | 66 | 719 | 4.31e-60 | 218 |
MsaG035932 | AT3G06250.2 | 24.922 | 642 | 361 | 17 | 5 | 641 | 178 | 703 | 1.01e-51 | 193 |
MsaG035932 | AT3G06250.1 | 24.922 | 642 | 361 | 17 | 5 | 641 | 178 | 703 | 1.01e-51 | 193 |
MsaG035932 | AT3G06250.3 | 24.922 | 642 | 361 | 17 | 5 | 641 | 178 | 703 | 1.01e-51 | 193 |
MsaG035932 | AT2G27110.3 | 24.747 | 594 | 388 | 13 | 195 | 783 | 36 | 575 | 2.69e-50 | 188 |
MsaG035932 | AT3G22170.2 | 23.547 | 688 | 422 | 16 | 14 | 690 | 67 | 661 | 3.09e-50 | 190 |
MsaG035932 | AT3G22170.1 | 23.547 | 688 | 422 | 16 | 14 | 690 | 67 | 661 | 3.09e-50 | 190 |
MsaG035932 | AT2G27110.2 | 24.747 | 594 | 388 | 13 | 195 | 783 | 181 | 720 | 6.14e-50 | 189 |
MsaG035932 | AT2G27110.1 | 24.747 | 594 | 388 | 13 | 195 | 783 | 181 | 720 | 6.14e-50 | 189 |
MsaG035932 | AT1G76320.3 | 23.849 | 717 | 440 | 19 | 32 | 733 | 12 | 637 | 3.12e-49 | 185 |
MsaG035932 | AT1G76320.1 | 23.646 | 757 | 463 | 21 | 32 | 773 | 12 | 668 | 8.11e-49 | 184 |
MsaG035932 | AT1G76320.4 | 23.646 | 757 | 463 | 21 | 32 | 773 | 12 | 668 | 8.11e-49 | 184 |
MsaG035932 | AT1G76320.2 | 24.029 | 695 | 433 | 18 | 32 | 722 | 12 | 615 | 8.99e-49 | 184 |
MsaG035932 | AT5G18960.2 | 23.375 | 646 | 373 | 18 | 3 | 641 | 197 | 727 | 2.33e-45 | 175 |
MsaG035932 | AT5G18960.1 | 23.375 | 646 | 373 | 18 | 3 | 641 | 197 | 727 | 2.33e-45 | 175 |
MsaG035932 | AT1G10240.2 | 25.000 | 624 | 372 | 21 | 31 | 639 | 62 | 604 | 1.88e-44 | 171 |
MsaG035932 | AT1G10240.1 | 25.000 | 624 | 372 | 21 | 31 | 639 | 62 | 604 | 1.88e-44 | 171 |
MsaG035932 | AT4G38170.1 | 23.848 | 499 | 297 | 13 | 217 | 699 | 24 | 455 | 9.97e-44 | 167 |
MsaG035932 | AT5G28530.1 | 24.961 | 637 | 383 | 18 | 22 | 640 | 60 | 619 | 3.89e-43 | 167 |
MsaG035932 | AT5G28530.3 | 24.804 | 637 | 380 | 19 | 22 | 640 | 60 | 615 | 3.70e-42 | 164 |
MsaG035932 | AT5G28530.2 | 24.804 | 637 | 380 | 19 | 22 | 640 | 60 | 615 | 3.70e-42 | 164 |
MsaG035932 | AT2G32250.5 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 8.64e-42 | 164 |
MsaG035932 | AT2G32250.6 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 1.48e-41 | 163 |
MsaG035932 | AT2G32250.1 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 1.48e-41 | 163 |
MsaG035932 | AT2G32250.3 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 1.48e-41 | 163 |
MsaG035932 | AT2G32250.7 | 23.932 | 702 | 399 | 21 | 32 | 725 | 12 | 586 | 1.50e-41 | 163 |
MsaG035932 | AT2G32250.2 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 1.58e-41 | 163 |
MsaG035932 | AT2G32250.4 | 23.934 | 727 | 416 | 22 | 7 | 725 | 30 | 627 | 1.58e-41 | 163 |
MsaG035932 | AT2G32250.8 | 23.932 | 702 | 399 | 21 | 32 | 725 | 12 | 586 | 1.99e-41 | 162 |
MsaG035932 | AT1G80010.1 | 24.608 | 638 | 386 | 22 | 23 | 642 | 101 | 661 | 4.66e-40 | 158 |
MsaG035932 | AT1G52520.1 | 22.756 | 624 | 402 | 17 | 23 | 642 | 91 | 638 | 3.28e-35 | 143 |
MsaG035932 | AT4G19990.3 | 24.832 | 447 | 285 | 11 | 23 | 465 | 27 | 426 | 3.81e-30 | 127 |
MsaG035932 | AT4G19990.3 | 36.082 | 97 | 52 | 2 | 573 | 669 | 497 | 583 | 1.96e-11 | 68.2 |
MsaG035932 | AT4G19990.4 | 24.832 | 447 | 285 | 11 | 23 | 465 | 27 | 426 | 3.81e-30 | 127 |
MsaG035932 | AT4G19990.4 | 36.082 | 97 | 52 | 2 | 573 | 669 | 497 | 583 | 1.96e-11 | 68.2 |
MsaG035932 | AT4G19990.5 | 24.832 | 447 | 285 | 11 | 23 | 465 | 27 | 426 | 3.93e-30 | 127 |
MsaG035932 | AT4G19990.5 | 36.082 | 97 | 52 | 2 | 573 | 669 | 497 | 583 | 1.86e-11 | 68.2 |
MsaG035932 | AT4G19990.7 | 24.832 | 447 | 285 | 11 | 23 | 465 | 41 | 440 | 4.26e-30 | 127 |
MsaG035932 | AT4G19990.7 | 36.082 | 97 | 52 | 2 | 573 | 669 | 511 | 597 | 2.03e-11 | 68.2 |
MsaG035932 | AT4G19990.6 | 24.832 | 447 | 285 | 11 | 23 | 465 | 27 | 426 | 5.23e-30 | 127 |
MsaG035932 | AT4G19990.6 | 36.082 | 97 | 52 | 2 | 573 | 669 | 497 | 583 | 2.13e-11 | 68.2 |
MsaG035932 | AT4G19990.2 | 24.832 | 447 | 285 | 11 | 23 | 465 | 27 | 426 | 5.23e-30 | 127 |
MsaG035932 | AT4G19990.2 | 36.082 | 97 | 52 | 2 | 573 | 669 | 497 | 583 | 2.13e-11 | 68.2 |
MsaG035932 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 201 | 465 | 106 | 369 | 2.42e-29 | 125 |
MsaG035932 | AT4G19990.1 | 36.082 | 97 | 52 | 2 | 573 | 669 | 440 | 526 | 2.00e-11 | 68.2 |
MsaG035932 | AT5G28530.4 | 22.771 | 628 | 345 | 21 | 22 | 640 | 60 | 556 | 4.43e-26 | 114 |
MsaG035932 | AT5G28530.5 | 22.611 | 628 | 342 | 22 | 22 | 640 | 60 | 552 | 3.63e-25 | 111 |
Find 114 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 7:+24766033 | None:intergenic |
TAAACTTCAGCTGCCTTTAT+TGG | 0.169733 | 7:-24767443 | MsaT035932.1:intron |
GAGAGATGATGAAGCTTTAT+TGG | 0.183881 | 7:-24765947 | MsaT035932.1:CDS |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7:-24766895 | MsaT035932.1:CDS |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 7:+24767316 | None:intergenic |
TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 7:+24766039 | None:intergenic |
CTCCTCATAATAGTATTTAA+AGG | 0.287001 | 7:+24766719 | None:intergenic |
GCCTTCCAATGTTGATGTTT+TGG | 0.297192 | 7:-24766604 | MsaT035932.1:CDS |
TCTACTGTTGGCCTGTTGTT+AGG | 0.303711 | 7:+24768536 | None:intergenic |
CGATCATGATCTTCAAAACT+TGG | 0.305304 | 7:+24766555 | None:intergenic |
AGAGATGATGAAGCTTTATT+GGG | 0.307122 | 7:-24765946 | MsaT035932.1:CDS |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 7:+24768345 | None:intergenic |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 7:-24768029 | MsaT035932.1:CDS |
GCATACGATTTGCATAAGTT+TGG | 0.330274 | 7:+24767039 | None:intergenic |
TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 7:-24766435 | MsaT035932.1:CDS |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7:+24767979 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 7:+24767430 | None:intergenic |
TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 7:+24765971 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 7:-24767972 | MsaT035932.1:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7:-24767980 | MsaT035932.1:CDS |
GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 7:-24768270 | MsaT035932.1:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7:+24766057 | None:intergenic |
TTCCTTTAAATACTATTATG+AGG | 0.399583 | 7:-24766721 | MsaT035932.1:CDS |
TCATGCTGAGTTGGACTTCA+AGG | 0.402098 | 7:-24766853 | MsaT035932.1:CDS |
GAAGACCTACCTCAGACTTT+AGG | 0.413032 | 7:-24767070 | MsaT035932.1:CDS |
CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 7:-24766479 | MsaT035932.1:CDS |
GACCGCATCAACTGACTGTT+GGG | 0.417096 | 7:+24766801 | None:intergenic |
CTCGACGGTGTTCTTGAAGC+TGG | 0.420714 | 7:-24766195 | MsaT035932.1:CDS |
AAAACACCTGGAAAACTATT+CGG | 0.428349 | 7:+24767257 | None:intergenic |
GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 7:-24768257 | MsaT035932.1:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7:-24768332 | MsaT035932.1:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7:-24768450 | MsaT035932.1:CDS |
GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 7:-24766162 | MsaT035932.1:CDS |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 7:+24768747 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 7:+24768746 | None:intergenic |
TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 7:+24766065 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7:-24768467 | MsaT035932.1:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 7:-24767021 | MsaT035932.1:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 7:-24768415 | MsaT035932.1:CDS |
CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 7:-24766755 | MsaT035932.1:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 7:-24768302 | MsaT035932.1:CDS |
TTGAAGACTTAGATGGCATC+GGG | 0.465118 | 7:+24766127 | None:intergenic |
AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 7:-24768269 | MsaT035932.1:CDS |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 7:-24768547 | MsaT035932.1:CDS |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 7:+24766378 | None:intergenic |
GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 7:-24765981 | MsaT035932.1:CDS |
CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 7:+24768362 | None:intergenic |
ATCATGATCGATTTGATGAA+AGG | 0.476999 | 7:-24766542 | MsaT035932.1:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 7:-24767022 | MsaT035932.1:CDS |
TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 7:+24768218 | None:intergenic |
GATCATGATCTTCAAAACTT+GGG | 0.487945 | 7:+24766556 | None:intergenic |
CATTCTTTGAAGACAATACC+TGG | 0.489494 | 7:-24766396 | MsaT035932.1:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7:-24766705 | MsaT035932.1:CDS |
GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 7:+24766311 | None:intergenic |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7:-24766881 | MsaT035932.1:CDS |
CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 7:-24768584 | MsaT035932.1:CDS |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 7:-24768748 | MsaT035932.1:CDS |
TTTGAAGACTTAGATGGCAT+CGG | 0.503312 | 7:+24766126 | None:intergenic |
TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 7:+24766066 | None:intergenic |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 7:+24768473 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 7:-24766862 | MsaT035932.1:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 7:-24768618 | MsaT035932.1:CDS |
TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 7:-24768573 | MsaT035932.1:CDS |
GATCTTCAAAACTTGGGGAA+AGG | 0.512098 | 7:+24766562 | None:intergenic |
ACTGTTGGTGAAACATCTGC+TGG | 0.515392 | 7:-24766096 | MsaT035932.1:CDS |
TGGCCTTTGTTCATGGCACA+TGG | 0.516705 | 7:-24767231 | MsaT035932.1:CDS |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7:+24766913 | None:intergenic |
GGTAATTATGCATATAACAC+TGG | 0.523547 | 7:-24768680 | MsaT035932.1:CDS |
CTGTTGGTGAAACATCTGCT+GGG | 0.524135 | 7:-24766095 | MsaT035932.1:CDS |
AGAACAGGGGCTTCTTATGT+CGG | 0.528346 | 7:-24766464 | MsaT035932.1:CDS |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 7:+24768748 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7:-24766704 | MsaT035932.1:CDS |
TGCATCCAAAACATCAACAT+TGG | 0.544202 | 7:+24766599 | None:intergenic |
AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 7:-24768572 | MsaT035932.1:CDS |
CTTATGCAAATCGTATGCAT+TGG | 0.556208 | 7:-24767034 | MsaT035932.1:CDS |
CATAATAGTATTTAAAGGAA+AGG | 0.556288 | 7:+24766724 | None:intergenic |
GACCTACCTCAGACTTTAGG+TGG | 0.559106 | 7:-24767067 | MsaT035932.1:CDS |
ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 7:-24766478 | MsaT035932.1:CDS |
CTGAAATCGACCGTCAATGT+TGG | 0.564487 | 7:-24766321 | MsaT035932.1:CDS |
GGACCGCATCAACTGACTGT+TGG | 0.564630 | 7:+24766800 | None:intergenic |
TAAGATATATAGATGGGATG+TGG | 0.566406 | 7:-24768408 | MsaT035932.1:CDS |
TCCAAAACATCAACATTGGA+AGG | 0.569301 | 7:+24766603 | None:intergenic |
TGAATAAATGCAAAGCAAGA+AGG | 0.570463 | 7:+24766759 | None:intergenic |
TCTTCAAAAGTAGCTACTGT+TGG | 0.571634 | 7:-24766111 | MsaT035932.1:CDS |
GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 7:+24768374 | None:intergenic |
GAGATGATGAAGCTTTATTG+GGG | 0.576179 | 7:-24765945 | MsaT035932.1:CDS |
TGAAGCTTTATTGGGGATTG+TGG | 0.577426 | 7:-24765938 | MsaT035932.1:CDS |
ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 7:+24766557 | None:intergenic |
GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 7:-24768254 | MsaT035932.1:CDS |
TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 7:-24768263 | MsaT035932.1:CDS |
AAGATCTTGGAGTTCTTAGG+TGG | 0.582236 | 7:-24766432 | MsaT035932.1:CDS |
AACACAATAACACACTAGCC+TGG | 0.584442 | 7:+24767285 | None:intergenic |
ACCAGTGGACTGTCTACTGT+TGG | 0.592390 | 7:+24768524 | None:intergenic |
TATGATGATGCTGATAATGA+CGG | 0.599988 | 7:-24766627 | MsaT035932.1:CDS |
CTGCCATGTGCCATGAACAA+AGG | 0.600144 | 7:+24767228 | None:intergenic |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 7:-24768414 | MsaT035932.1:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 7:+24766287 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+TGG | 0.604978 | 7:-24768249 | MsaT035932.1:CDS |
ACATCTAAAATTTGTCTCGA+CGG | 0.614100 | 7:-24766210 | MsaT035932.1:CDS |
ATGATGATGCTGATAATGAC+GGG | 0.620534 | 7:-24766626 | MsaT035932.1:CDS |
ATCCCAACAGTCAGTTGATG+CGG | 0.626787 | 7:-24766803 | MsaT035932.1:CDS |
CTTTAAATACTATTATGAGG+AGG | 0.630294 | 7:-24766718 | MsaT035932.1:CDS |
TTCACAAACTCAATAACCAG+TGG | 0.633415 | 7:+24768509 | None:intergenic |
GCCAACAGTAGACAGTCCAC+TGG | 0.642242 | 7:-24768525 | MsaT035932.1:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7:-24766880 | MsaT035932.1:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 7:+24767305 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 7:+24766336 | None:intergenic |
GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 7:+24767061 | None:intergenic |
TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 7:-24766477 | MsaT035932.1:CDS |
TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 7:+24766062 | None:intergenic |
TGTTGGTGAAACATCTGCTG+GGG | 0.688137 | 7:-24766094 | MsaT035932.1:CDS |
AGGTGTGTACTTGTTTACAA+CGG | 0.690351 | 7:+24766779 | None:intergenic |
AGCCACCTAAAGTCTGAGGT+AGG | 0.699500 | 7:+24767065 | None:intergenic |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 7:-24767303 | MsaT035932.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 24765927 | 24768801 | 24765927 | ID=MsaG035932 |
Chr7 | mRNA | 24765927 | 24768801 | 24765927 | ID=MsaT035932.1;Parent=MsaG035932 |
Chr7 | exon | 24765927 | 24767455 | 24765927 | ID=MsaT035932.1.exon2;Parent=MsaT035932.1 |
Chr7 | CDS | 24765927 | 24767455 | 24765927 | ID=cds.MsaT035932.1;Parent=MsaT035932.1 |
Chr7 | exon | 24767973 | 24768801 | 24767973 | ID=MsaT035932.1.exon1;Parent=MsaT035932.1 |
Chr7 | CDS | 24767973 | 24768801 | 24767973 | ID=cds.MsaT035932.1;Parent=MsaT035932.1 |
Gene Sequence |
Protein sequence |