AlfalfaGEDB | MsaG036017

M. sativa ssp. caerulea / MsaG036017

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036017	XP_013450231.1	83.206	524	67	4	1	524	1	503	0.0	830

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036017	sp\|Q7XJK8\|PHE2_ARATH	27.985	268	164	7	6	264	2	249	3.98e-19	90.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036017	tr\|A0A072U3F6\|A0A072U3F6_MEDTR	83.206	524	67	4	1	524	1	503	0.0	830

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036017	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG035189	MsaG036017	0.956661	5.988071e-114	2.337896e-108

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036017	MtrunA17_Chr7g0267601	83.206	524	67	4	1	524	1	503	0.0	830
MsaG036017	MtrunA17_Chr4g0008701	82.824	524	85	2	1	524	1	519	0.0	822
MsaG036017	MtrunA17_Chr3g0128721	43.986	582	256	11	1	524	1	570	2.70e-130	391
MsaG036017	MtrunA17_Chr8g0361741	52.734	256	117	1	13	268	13	264	1.87e-71	229
MsaG036017	MtrunA17_Chr3g0107381	33.939	165	105	2	1	164	1	162	2.43e-24	101
MsaG036017	MtrunA17_Chr5g0432691	32.692	156	105	0	7	162	4	159	1.25e-22	94.7
MsaG036017	MtrunA17_Chr8g0351751	38.168	131	79	1	4	132	1	131	3.75e-22	95.9
MsaG036017	MtrunA17_Chr3g0107331	34.667	150	97	1	6	154	2	151	1.37e-21	91.7
MsaG036017	MtrunA17_Chr4g0014321	36.066	122	78	0	6	127	3	124	2.09e-21	93.2
MsaG036017	MtrunA17_Chr4g0013041	38.095	126	76	1	7	132	4	127	2.06e-20	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036017	AT1G65300.1	27.985	268	164	7	6	264	2	249	4.04e-20	90.9
MsaG036017	AT2G40210.1	28.916	166	115	2	4	169	1	163	2.53e-19	90.1
MsaG036017	AT3G05860.3	30.657	137	91	2	1	136	1	134	1.35e-16	80.1
MsaG036017	AT3G05860.1	30.657	137	91	2	1	136	1	134	1.47e-16	80.1
MsaG036017	AT3G05860.2	30.657	137	91	2	1	136	1	134	3.21e-16	77.8
MsaG036017	AT5G26650.1	31.579	114	78	0	7	120	2	115	3.90e-16	80.5
MsaG036017	AT5G27960.1	31.579	114	78	0	7	120	2	115	1.08e-15	78.6
MsaG036017	AT1G31630.1	31.304	115	78	1	6	120	2	115	6.56e-15	76.6
MsaG036017	AT1G22590.2	29.358	109	74	1	6	114	3	108	6.88e-15	72.8
MsaG036017	AT2G15660.1	28.351	194	118	7	5	194	3	179	9.46e-15	74.7

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Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATTGGTGCCAACGT+TGG	0.577514	7:+26028022	None:intergenic
AAAGTTGACCAAATGACCAG+TGG	0.671225	7:-26027911	MsaT036017.1:CDS
AACAAATTTGATGATGGCAT+GGG	0.594149	7:-26027782	MsaT036017.1:CDS
AACAATATAGGTAGCAATAT+TGG	0.211965	7:-26027599	MsaT036017.1:CDS
AACACACCTACACCACCACT+AGG	0.650603	7:+26027557	None:intergenic
AATATGGCCATCTCCTACGG+TGG	0.571701	7:-26028356	MsaT036017.1:CDS
ACAACATAGATAGCAACATG+TGG	0.691102	7:-26027370	MsaT036017.1:CDS
ACAATATAGGTAGCAATATT+GGG	0.381596	7:-26027598	MsaT036017.1:CDS
ACACCATGATTTGTATGTGG+TGG	0.720749	7:+26027236	None:intergenic
ACATCACATGAAAATCATAG+TGG	0.625105	7:-26027671	MsaT036017.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	26026980	26028554	26026980	ID=MsaG036017
Chr7	mRNA	26026980	26028554	26026980	ID=MsaT036017.1;Parent=MsaG036017
Chr7	exon	26026980	26028554	26026980	ID=MsaT036017.1.exon1;Parent=MsaT036017.1
Chr7	CDS	26026980	26028554	26026980	ID=cds.MsaT036017.1;Parent=MsaT036017.1

Gene Sequence

>MsaT036017.1

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGTTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGTGGAATTGAGGCATGTGCGATTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAAGTATGAGTCAATGTCATTGGATGTACAATCGAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGCAAAGATCGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCTGAATCGTTTGATTGCTTTTACACTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTTCTCCAACGTTGGCACCAATATCTTTTACTTTAGAAGATGGTGGTGGGGTACAATCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGACCAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGAAGATACCTCCACTAACAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAAATTTGATGATGGCATGGGAATACCATCACCTGAAAATTTTAGTGGTGGTTTTTATGCAGCGTTTTTTCAAGATAATTTGCAAGATTTTGATAGTATCATGGAGATAACATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGTGGAAATCGGGGGAATTTTATTAACAATATAGGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGATAGCAATACAAGGATACTACCACATGCAAATCTGAATGAGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAGCAACATGTGGATACAACATGCAAATTTTAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGACCGATTTAACTTTGAAGATTTTGATAACAACACAGGTAGCAACATGTTGATACCACCACATACAAATCATGGTGTTGGTAATGTTGATGTTTTGTCTCATCAAAGAAATTTTGAAGTTCAGAAAAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGCTGATATGATGACTTTTCATCAAAACAATTTTAGTGGCAATATTAATGGAGATGGGATGCGGAGTTTTAATGCGAACTTTGTTGACAATAATTACAGGAACAACTTCAACCCTGGATTTCCTTCAGAATAA

Protein sequence

>MsaT036017.1

MTRIRKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIEACAIVFGPGDTKPSIWPSPTVAEDLITKYESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKMSRHLEKEILPLNNPSPTLAPISFTLEDGGGVQSGVNMYGHVLNQQPLLDLVEKVDQMTSGFNNNHGSSMKIPPLTDLSGGGCDNLANQADFGDFDNKFDDGMGIPSPENFSGGFYAAFFQDNLQDFDSIMEITSHENHSGSVHDMFLPRGNRGNFINNIGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITDSNTRILPHANLNENVDLLPPQENFEDQENFGGFDDNIDSNMWIQHANFSGGDTLLPQENFGDRFNFEDFDNNTGSNMLIPPHTNHGVGNVDVLSHQRNFEVQKNFGGFDDDTCSNMWKPPHENPSNGGADMMTFHQNNFSGNINGDGMRSFNANFVDNNYRNNFNPGFPSE*