AlfalfaGEDB | MsaG036021

M. sativa ssp. caerulea / MsaG036021

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036021	XP_013450231.1	83.015	524	68	4	1	524	1	503	0.0	826

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036021	sp\|Q7XJK8\|PHE2_ARATH	27.612	268	165	7	6	264	2	249	1.19e-17	86.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036021	tr\|A0A072U3F6\|A0A072U3F6_MEDTR	83.015	524	68	4	1	524	1	503	0.0	826

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG036021	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036021	MtrunA17_Chr7g0267601	83.015	524	68	4	1	524	1	503	0.0	826
MsaG036021	MtrunA17_Chr4g0008701	82.824	524	85	2	1	524	1	519	0.0	822
MsaG036021	MtrunA17_Chr3g0128721	44.158	582	255	12	1	524	1	570	4.96e-131	392
MsaG036021	MtrunA17_Chr8g0361741	51.562	256	120	1	13	268	13	264	3.53e-67	218
MsaG036021	MtrunA17_Chr3g0107381	33.939	165	105	2	1	164	1	162	5.16e-24	100
MsaG036021	MtrunA17_Chr3g0107331	34.667	150	97	1	6	154	2	151	1.39e-21	91.7
MsaG036021	MtrunA17_Chr5g0432691	32.051	156	106	0	7	162	4	159	6.19e-21	89.7
MsaG036021	MtrunA17_Chr8g0351751	37.405	131	80	1	4	132	1	131	8.59e-21	91.7
MsaG036021	MtrunA17_Chr3g0107351	32.026	153	103	1	6	157	2	154	2.31e-20	88.2
MsaG036021	MtrunA17_Chr3g0107361	32.680	153	102	1	6	157	2	154	2.52e-20	88.2

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036021	AT1G65300.1	27.612	268	165	7	6	264	2	249	1.21e-18	86.7
MsaG036021	AT2G40210.1	28.313	166	116	2	4	169	1	163	9.37e-18	85.5
MsaG036021	AT3G05860.1	29.927	137	92	2	1	136	1	134	2.96e-15	76.3
MsaG036021	AT3G05860.3	29.927	137	92	2	1	136	1	134	3.18e-15	75.9
MsaG036021	AT5G26650.1	30.702	114	79	0	7	120	2	115	8.31e-15	76.6
MsaG036021	AT1G22590.2	29.358	109	74	1	6	114	3	108	9.92e-15	72.4
MsaG036021	AT5G06500.1	28.082	146	104	1	4	149	1	145	1.02e-14	74.3
MsaG036021	AT3G05860.2	29.927	137	92	2	1	136	1	134	1.02e-14	73.6
MsaG036021	AT5G27960.1	30.702	114	79	0	7	120	2	115	2.58e-14	74.3
MsaG036021	AT1G31630.1	30.435	115	79	1	6	120	2	115	8.11e-14	73.2

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 101 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATTGGTGCCAACGT+TGG	0.577514	7:+26151091	None:intergenic
AAAGTTGACCAAATGACCAG+TGG	0.671225	7:-26150980	MsaT036021.1:CDS
AACAAATTTGATGATGGCAT+GGG	0.594149	7:-26150851	MsaT036021.1:CDS
AACAATATAGGTAGCAATAT+TGG	0.211965	7:-26150668	MsaT036021.1:CDS
AACACACCTACACCACCACT+AGG	0.650603	7:+26150626	None:intergenic
AACTTTGGCGGCAATATTAA+TGG	0.210065	7:-26150131	MsaT036021.1:CDS
AATATGGCCATCTCCTACGG+TGG	0.571701	7:-26151425	MsaT036021.1:CDS
ACAATATAGGTAGCAATATT+GGG	0.381596	7:-26150667	MsaT036021.1:CDS
ACACCATGATTTGTATGTGG+TGG	0.720749	7:+26150305	None:intergenic
ACATCACATGAAAATCATAG+TGG	0.625105	7:-26150740	MsaT036021.1:CDS

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	26150049	26151623	26150049	ID=MsaG036021
Chr7	mRNA	26150049	26151623	26150049	ID=MsaT036021.1;Parent=MsaG036021
Chr7	exon	26150049	26151623	26150049	ID=MsaT036021.1.exon1;Parent=MsaT036021.1
Chr7	CDS	26150049	26151623	26150049	ID=cds.MsaT036021.1;Parent=MsaT036021.1

Gene Sequence

>MsaT036021.1

ATGACTAGAATCAAAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGTTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGTGGAATTGAGGCATGTGCGATTGTGTTTGGGCTGTGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAAGTATGAGTCAATGTCATTGGATGTACAATCGAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGCAAAGATTGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCTGAATCGTTTGATTGCTTTTACACTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTTCTCCAACGTTGGCACCAATATCTTTTACTTTAGAAGATGGTGGTGGGGTACAATCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGACCAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGAAGATACCTCCACTAACAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAAATTTGATGATGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTTATGCAGCGTTTTTTCAAGATAATTTGCAAGATTTTGATAGTATCATGGAGATAACATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGTGGAAATCGGGGGAATTTTATTAACAATATAGGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAATACAAGGATACTACCACATGCAAATCTGAATGAGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACATCATAGATAGCAGCATGTGGATACAACATGCAAATTTTAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGACCAATTTCACTTTGAAGATTTTGATAACAACACAGGTAGCAACATGTTGATACCACCACATACAAATCATGGTGTTGGTAATGTTGATGTTTTGTCTCATCAAAGAAATTTTGAAGTTCACAGAAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAACTTTGGCGGCAATATTAATGGAGATGGGATGCGGAGTTTTAATGCGAACTTTGTTGACAATAATTACAGGAACAACTTCAACCCTGGATTTCCTTCAGAATAA

Protein sequence

>MsaT036021.1

MTRIKKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIEACAIVFGLCDTKPSIWPSPTVAEDLITKYESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKMSRHLEKEILPLNNPSPTLAPISFTLEDGGGVQSGVNMYGHVLNQQPLLDLVEKVDQMTSGFNNNHGSSMKIPPLTDLSGGGCDNLANQADFGDFDNKFDDGMGIPSPENSSGGFYAAFFQDNLQDFDSIMEITSHENHSGSVHDMFLPRGNRGNFINNIGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTRILPHANLNENVDLLPPQENFEDQENFGGFDDIIDSSMWIQHANFSGGDTLLPQENFGDQFHFEDFDNNTGSNMLIPPHTNHGVGNVDVLSHQRNFEVHRNFGGFDDDTCSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMRSFNANFVDNNYRNNFNPGFPSE*