AlfalfaGEDB | MsaG036045

M. sativa ssp. caerulea / MsaG036045

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	XP_013454922.1	81.071	523	90	3	1	518	1	519	0.0	800

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	sp\|Q7XJK8\|PHE2_ARATH	35.652	115	74	0	6	120	2	116	1.32e-18	89.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	tr\|A0A072USW1\|A0A072USW1_MEDTR	81.071	523	90	3	1	518	1	519	0.0	800

TFs/TRs:

Gene ID	Type	Classification
MsaG036045	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000722	MsaG036045	0.803786	4.974488e-49	7.332205e-47
MsaG001004	MsaG036045	0.812699	6.395949e-51	1.167071e-48
MsaG001420	MsaG036045	0.806586	1.298214e-49	2.042844e-47
MsaG001878	MsaG036045	0.829191	1.059568e-54	2.996016e-52
MsaG003072	MsaG036045	0.801223	1.669528e-48	2.320404e-46
MsaG003088	MsaG036045	0.805305	2.406874e-49	3.674843e-47
MsaG003399	MsaG036045	0.805172	2.565326e-49	3.904833e-47
MsaG003381	MsaG036045	0.801795	1.276049e-48	1.796767e-46
MsaG003679	MsaG036045	0.822878	3.301985e-53	7.840792e-51
MsaG003998	MsaG036045	0.824826	1.159588e-53	2.903081e-51
MsaG003999	MsaG036045	0.801151	1.726537e-48	2.395790e-46
MsaG004152	MsaG036045	0.816392	9.829944e-52	1.968539e-49
MsaG004153	MsaG036045	0.815114	1.888559e-51	3.661112e-49
MsaG004989	MsaG036045	0.832428	1.719743e-55	5.338905e-53
MsaG005331	MsaG036045	0.808192	5.946798e-50	9.722515e-48
MsaG006160	MsaG036045	0.820756	1.017366e-52	2.282667e-50
MsaG006174	MsaG036045	0.810861	1.599035e-50	2.788658e-48
MsaG006480	MsaG036045	0.811788	1.008647e-50	1.799445e-48
MsaG006757	MsaG036045	0.851340	1.807808e-60	1.026105e-57
MsaG006944	MsaG036045	0.822970	3.142646e-53	7.481227e-51
MsaG006994	MsaG036045	0.809878	2.600633e-50	4.428083e-48
MsaG007551	MsaG036045	0.842721	4.050987e-58	1.723961e-55
MsaG007737	MsaG036045	0.841141	1.054293e-57	4.266295e-55
MsaG007908	MsaG036045	0.831233	3.380586e-55	1.013540e-52
MsaG008223	MsaG036045	0.823644	2.191068e-53	5.312158e-51
MsaG008480	MsaG036045	0.806629	1.271120e-49	2.002268e-47
MsaG008704	MsaG036045	0.809392	3.303324e-50	5.558935e-48
MsaG010065	MsaG036045	0.819950	1.553962e-52	3.413204e-50
MsaG011177	MsaG036045	0.850248	3.655664e-60	1.998044e-57
MsaG011132	MsaG036045	0.847735	1.811086e-59	9.090479e-57
MsaG011386	MsaG036045	0.848996	8.141599e-60	4.264161e-57
MsaG012060	MsaG036045	0.821045	8.732190e-53	1.974453e-50
MsaG012132	MsaG036045	0.828052	1.991032e-54	5.452725e-52
MsaG012449	MsaG036045	0.818066	4.147567e-52	8.671560e-50
MsaG012806	MsaG036045	0.810678	1.751490e-50	3.040807e-48
MsaG015142	MsaG036045	0.845125	9.252693e-59	4.257248e-56
MsaG015333	MsaG036045	0.805154	2.587790e-49	3.937345e-47
MsaG015721	MsaG036045	0.813590	4.086226e-51	7.624247e-49
MsaG015809	MsaG036045	0.817705	4.998352e-52	1.035337e-49
MsaG016248	MsaG036045	0.844625	1.260489e-58	5.705289e-56
MsaG016290	MsaG036045	0.834251	6.070650e-56	1.988338e-53
MsaG016347	MsaG036045	0.819813	1.669337e-52	3.653182e-50
MsaG017722	MsaG036045	0.844716	1.191779e-58	5.410095e-56
MsaG017804	MsaG036045	0.818310	3.653467e-52	7.686751e-50
MsaG018112	MsaG036045	0.839232	3.302700e-57	1.258612e-54
MsaG018608	MsaG036045	0.819069	2.461942e-52	5.283607e-50
MsaG020336	MsaG036045	0.860729	3.319460e-63	2.653906e-60
MsaG020497	MsaG036045	0.820129	1.414355e-52	3.121438e-50
MsaG020713	MsaG036045	0.825388	8.553238e-54	2.174600e-51
MsaG020815	MsaG036045	0.877491	1.258946e-68	2.024422e-65
MsaG020838	MsaG036045	0.884445	4.095227e-71	9.129315e-68
MsaG020889	MsaG036045	0.827248	3.099975e-54	8.300209e-52
MsaG022869	MsaG036045	0.844057	1.788772e-58	7.945958e-56
MsaG023405	MsaG036045	0.805906	1.802681e-49	2.791325e-47
MsaG023679	MsaG036045	0.830970	3.919681e-55	1.166315e-52
MsaG026487	MsaG036045	0.808409	5.349648e-50	8.791714e-48
MsaG027138	MsaG036045	0.849692	5.222640e-60	2.801093e-57
MsaG027519	MsaG036045	0.840486	1.562314e-57	6.192719e-55
MsaG027591	MsaG036045	0.835725	2.591046e-56	8.869309e-54
MsaG028119	MsaG036045	0.832924	1.297310e-55	4.086225e-53
MsaG029235	MsaG036045	0.811971	9.204695e-51	1.649592e-48
MsaG029381	MsaG036045	0.814119	3.127868e-51	5.913911e-49
MsaG031088	MsaG036045	0.858371	1.684848e-62	1.231873e-59
MsaG031410	MsaG036045	0.804868	2.967755e-49	4.485574e-47
MsaG034224	MsaG036045	0.813009	5.473098e-51	1.006436e-48
MsaG034426	MsaG036045	0.844234	1.603594e-58	7.165503e-56
MsaG036045	MsaG036346	0.818696	2.990661e-52	6.355579e-50
MsaG036045	MsaG038518	0.805089	2.669547e-49	4.055559e-47
MsaG036045	MsaG040682	0.821051	8.704690e-53	1.968546e-50
MsaG036045	MsaG040713	0.871330	1.515785e-66	1.858517e-63
MsaG036045	MsaG042068	0.812597	6.730829e-51	1.225065e-48
MsaG036045	MsaG042512	0.813714	3.837421e-51	7.182146e-49
MsaG036045	MsaG043350	0.812746	6.246104e-51	1.141058e-48
MsaG036045	MsaG043396	0.804331	3.836800e-49	5.727368e-47
MsaG036045	MsaG044113	0.830444	5.265916e-55	1.543434e-52
MsaG036045	MsaG044120	0.832023	2.163637e-55	6.638881e-53
MsaG036045	MsaG044728	0.818632	3.091666e-52	6.559469e-50
MsaG036045	MsaG045689	0.812728	6.302390e-51	1.150823e-48
MsaG036045	MsaG045703	0.826393	4.949206e-54	1.293982e-51
MsaG036045	MsaG046135	0.817762	4.852801e-52	1.006702e-49
MsaG036045	MsaG046538	0.833793	7.895189e-56	2.551038e-53
MsaG036045	MsaG046436	0.819615	1.851630e-52	4.030844e-50
MsaG036045	MsaG046446	0.815863	1.288618e-51	2.546031e-49
MsaG036045	MsaG001346	0.886536	6.804440e-72	1.681198e-68
MsaG036045	MsaG001555	0.843187	3.047125e-58	1.316286e-55
MsaG036045	MsaG007986	0.801914	1.206298e-48	1.703187e-46
MsaG036045	MsaG008209	0.811257	1.313806e-50	2.313557e-48
MsaG036045	MsaG007261	0.809155	3.711250e-50	6.209814e-48
MsaG036045	MsaG012932	0.822166	4.823711e-53	1.123629e-50
MsaG036045	MsaG028901	0.808604	4.862049e-50	8.028146e-48
MsaG036045	MsaG028598	0.823635	2.201940e-53	5.337132e-51
MsaG036045	MsaG030748	0.804541	3.469308e-49	5.204050e-47
MsaG036045	MsaG031242	0.803015	7.173442e-49	1.038675e-46
MsaG036045	MsaG030699	0.844763	1.157730e-58	5.264002e-56
MsaG036045	MsaG030436	0.817271	6.255109e-52	1.281343e-49
MsaG036045	MsaG036646	0.856121	7.728234e-62	5.200097e-59
MsaG036045	MsaG036687	0.817245	6.338316e-52	1.297527e-49
MsaG036045	MsaG035954	0.804275	3.940554e-49	5.874643e-47
MsaG036045	MsaG039594	0.811496	1.166402e-50	2.066084e-48
MsaG036045	MsaG035299	0.814815	2.197535e-51	4.228325e-49
MsaG036045	MsaG039324	0.822203	4.729653e-53	1.102812e-50
MsaG036045	MsaG043220	0.808228	5.843833e-50	9.562423e-48
MsaG036045	MsaG046905	0.819868	1.621988e-52	3.554772e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	MtrunA17_Chr4g0008701	81.071	523	90	3	1	518	1	519	0.0	800
MsaG036045	MtrunA17_Chr7g0267601	80.534	524	75	7	1	518	1	503	0.0	787
MsaG036045	MtrunA17_Chr3g0128721	44.254	583	247	8	1	518	1	570	4.43e-132	395
MsaG036045	MtrunA17_Chr8g0361741	52.222	270	125	1	13	282	13	278	4.46e-72	231
MsaG036045	MtrunA17_Chr5g0432691	33.974	156	103	0	7	162	4	159	1.23e-24	100
MsaG036045	MtrunA17_Chr3g0107381	32.727	165	107	2	1	164	1	162	1.00e-22	96.7
MsaG036045	MtrunA17_Chr3g0107331	31.613	155	106	0	6	160	2	156	1.60e-21	91.3
MsaG036045	MtrunA17_Chr8g0351751	36.641	131	81	1	4	132	1	131	1.75e-21	93.6
MsaG036045	MtrunA17_Chr4g0014321	32.692	156	94	2	6	155	3	153	4.59e-21	92.0
MsaG036045	MtrunA17_Chr4g0013041	29.756	205	132	4	7	206	4	201	5.01e-21	91.3
MsaG036045	MtrunA17_Chr4g0014031	37.179	156	94	2	1	155	1	153	3.17e-19	86.7
MsaG036045	MtrunA17_Chr3g0107351	30.719	153	105	1	6	157	2	154	4.51e-19	84.3
MsaG036045	MtrunA17_Chr3g0107361	31.373	153	104	1	6	157	2	154	4.83e-19	84.3
MsaG036045	MtrunA17_Chr1g0197321	33.913	115	75	1	6	120	3	116	1.16e-18	83.2
MsaG036045	MtrunA17_Chr3g0107341	30.065	153	106	1	6	157	2	154	2.58e-18	82.4
MsaG036045	MtrunA17_Chr2g0283941	29.032	155	109	1	7	160	4	158	3.42e-18	84.0
MsaG036045	MtrunA17_Chr3g0110131	32.051	156	106	0	6	161	3	158	4.14e-18	84.0
MsaG036045	MtrunA17_Chr5g0420351	35.833	120	73	2	1	120	1	116	8.94e-17	77.8
MsaG036045	MtrunA17_Chr2g0296831	36.000	125	77	1	1	125	1	122	2.71e-16	75.1
MsaG036045	MtrunA17_Chr4g0014121	38.542	96	59	0	37	132	62	157	5.05e-16	76.6
MsaG036045	MtrunA17_Chr4g0014131	29.221	154	94	3	37	175	34	187	2.07e-15	75.9
MsaG036045	MtrunA17_Chr1g0197461	27.586	145	104	1	6	150	2	145	2.13e-15	73.9
MsaG036045	MtrunA17_Chr1g0188681	29.167	144	93	3	6	141	3	145	2.28e-15	73.6
MsaG036045	MtrunA17_Chr1g0197261	33.333	120	76	2	1	120	1	116	4.83e-15	72.8
MsaG036045	MtrunA17_Chr1g0193311	37.815	119	69	2	6	120	3	120	1.44e-13	68.6
MsaG036045	MtrunA17_Chr4g0012761	35.433	127	81	1	6	132	3	128	5.53e-13	67.0
MsaG036045	MtrunA17_Chr1g0188651	30.723	166	97	4	6	167	3	154	8.25e-13	66.2
MsaG036045	MtrunA17_Chr1g0188661	34.783	115	74	1	6	120	3	116	9.22e-13	66.2
MsaG036045	MtrunA17_Chr7g0218151	33.858	127	83	1	6	132	3	128	1.77e-12	65.5
MsaG036045	MtrunA17_Chr3g0107461	27.350	117	85	0	6	122	3	119	7.04e-12	63.9
MsaG036045	MtrunA17_Chr3g0106501	30.682	88	61	0	35	122	4	91	8.84e-12	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	AT2G40210.1	29.341	167	115	2	4	170	1	164	3.15e-20	92.8
MsaG036045	AT1G65300.1	35.652	115	74	0	6	120	2	116	1.34e-19	89.4
MsaG036045	AT3G05860.3	30.464	151	100	3	1	150	1	147	3.32e-17	81.6
MsaG036045	AT3G05860.1	30.464	151	100	3	1	150	1	147	4.03e-17	81.6
MsaG036045	AT5G26650.1	31.579	133	89	2	7	139	2	132	5.52e-17	83.2
MsaG036045	AT3G05860.2	30.464	151	100	3	1	150	1	147	1.45e-16	79.0
MsaG036045	AT1G31630.1	33.913	115	75	1	6	120	2	115	1.78e-16	81.3
MsaG036045	AT5G06500.1	30.000	150	104	1	6	155	3	151	2.70e-16	79.0
MsaG036045	AT5G27960.1	30.075	133	91	2	7	139	2	132	8.73e-16	79.0
MsaG036045	AT1G31640.1	33.043	115	76	1	6	120	2	115	1.15e-15	79.7
MsaG036045	AT1G22590.2	29.358	109	74	1	6	114	3	108	2.11e-15	74.3
MsaG036045	AT5G26630.1	34.637	179	106	5	1	177	1	170	6.42e-15	74.3
MsaG036045	AT5G48670.1	36.134	119	76	0	4	122	1	119	6.91e-15	76.3
MsaG036045	AT1G65330.1	32.743	113	76	0	8	120	4	116	9.17e-15	75.1
MsaG036045	AT2G28700.1	27.941	204	134	6	4	203	1	195	1.23e-14	75.5
MsaG036045	AT2G15660.1	31.214	173	98	7	5	171	3	160	2.15e-14	73.6
MsaG036045	AT5G27810.1	32.184	87	59	0	34	120	3	89	5.91e-11	60.5

Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTCTTTCTCAAGGAAATA+TGG	0.173617	7:+26477213	MsaT036045.1:CDS
TTGCCTCCTCAAGGATATTT+TGG	0.199048	7:+26477298	MsaT036045.1:CDS
AGTATTATTCTCAATCAATT+TGG	0.203967	7:-26476345	None:intergenic
TTGGCTAATCAAGCCGATTT+TGG	0.211096	7:+26477031	MsaT036045.1:CDS
CAAAATCTTCAAAGTTAAAT+TGG	0.246957	7:-26477543	None:intergenic
TTGACTCAAACCTGGTTATT+AGG	0.247950	7:-26476520	None:intergenic
GATTGTCACCTGCTCCATTT+TGG	0.265823	7:-26476411	None:intergenic
GGGCATTTCAGTAGCAATAT+TGG	0.280920	7:+26477235	MsaT036045.1:CDS
GAAAGGGTTGTTCACCAAAA+TGG	0.296295	7:+26476397	MsaT036045.1:CDS
AGAAAATGAAGAGACTTTAA+TGG	0.303503	7:+26476640	MsaT036045.1:CDS
CCAACAACCCTTGTTAGATT+TGG	0.312296	7:+26476907	MsaT036045.1:CDS
ATGACAACATAGATAACATT+TGG	0.344877	7:+26477461	MsaT036045.1:CDS
AAGGCATGTGCGGTTGTGTT+TGG	0.348949	7:+26476446	MsaT036045.1:CDS
GACAATCTTATGCGGCATTA+AGG	0.352556	7:+26476427	MsaT036045.1:CDS
TTTCTTTCTCAAGGAAATAT+GGG	0.363502	7:+26477214	MsaT036045.1:CDS
AATGGTGATGGGGTACATTC+TGG	0.370012	7:+26476857	MsaT036045.1:CDS
GGCATTTCAGTAGCAATATT+GGG	0.382881	7:+26477236	MsaT036045.1:CDS
GTGATACAAAACCATCAATA+TGG	0.392745	7:+26476474	MsaT036045.1:CDS
TTTGAAGATCAAGAAAACTT+TGG	0.393915	7:+26477430	MsaT036045.1:CDS
AGGCATGTGCGGTTGTGTTT+GGG	0.393959	7:+26476447	MsaT036045.1:CDS
TTTGAAGTTCAGGGGAACTT+TGG	0.396318	7:+26477649	MsaT036045.1:CDS
GTTATCAAAATCGCCAAAAT+CGG	0.397560	7:-26477044	None:intergenic
CAGGTTTGAGTCAATGTCAT+TGG	0.398460	7:+26476529	MsaT036045.1:CDS
AACTTTGGCAGCAATATTGA+TGG	0.399013	7:+26477766	MsaT036045.1:CDS
AATTATTCCGAAGGAAATCC+AGG	0.399449	7:-26477850	None:intergenic
CTTCAACCCTGGATTTCCTT+CGG	0.403734	7:+26477843	MsaT036045.1:CDS
GTAGGAGATGGCCATATTGA+TGG	0.410732	7:-26476485	None:intergenic
CTACCACATGCAAATTTGAA+TGG	0.411798	7:+26477376	MsaT036045.1:CDS
ATGGTGATGGGGTACATTCT+GGG	0.421537	7:+26476858	MsaT036045.1:CDS
GGCAGCAATATTGATGGAGA+TGG	0.423343	7:+26477772	MsaT036045.1:CDS
GAAAATGAAGAGACTTTAAT+GGG	0.430958	7:+26476641	MsaT036045.1:CDS
TTGTCTAAAGTAAAAGATAT+TGG	0.434434	7:-26476836	None:intergenic
CATTCTGGGGTTAACATGTA+TGG	0.436691	7:+26476872	MsaT036045.1:CDS
TGTGCGGTTGTGTTTGGGCC+AGG	0.446264	7:+26476452	MsaT036045.1:CDS
GGAGGTCAAAGCAACTTTCA+AGG	0.462180	7:+26477319	MsaT036045.1:CDS
CATGATATGTTTCTTTCTCA+AGG	0.468470	7:+26477205	MsaT036045.1:CDS
ATATCAACACCACCATTGCT+TGG	0.469029	7:-26477724	None:intergenic
TACCACATGCAAATTTGAAT+GGG	0.473760	7:+26477377	MsaT036045.1:CDS
TTTACTTTAGACAATGGTGA+TGG	0.480639	7:+26476845	MsaT036045.1:CDS
GAAGATCAAGAAAACTTTGG+AGG	0.480766	7:+26477433	MsaT036045.1:CDS
TACAAGAGCAACTTCAACCC+TGG	0.483870	7:+26477832	MsaT036045.1:CDS
GAGGTCTAGGCATTTAGAAA+AGG	0.487608	7:+26476775	MsaT036045.1:CDS
CCAAATCTAACAAGGGTTGT+TGG	0.489048	7:-26476907	None:intergenic
CCTACACCTCCAGATCTTAG+TGG	0.490566	7:+26476992	MsaT036045.1:CDS
GAAGTTCAGGGGAACTTTGG+AGG	0.495790	7:+26477652	MsaT036045.1:CDS
ATCAATATGGCCATCTCCTA+CGG	0.501169	7:+26476487	MsaT036045.1:CDS
GATGGAGGAGGATTATTAAG+AGG	0.505755	7:-26476806	None:intergenic
ATGGTTGTTATTGAAACCAC+TGG	0.506528	7:-26476951	None:intergenic
AGATCACTAGAAAGAGGTCT+AGG	0.508379	7:+26476762	MsaT036045.1:CDS
CAATCACCACCACTAAGATC+TGG	0.508447	7:-26477001	None:intergenic
CGCTATAAGAAAAGATTGAA+AGG	0.508733	7:+26476380	MsaT036045.1:CDS
CAACATGCAAATTTGAGTGC+TGG	0.511397	7:+26477487	MsaT036045.1:CDS
AATGTTGCTTTGTCTCATCA+AGG	0.517281	7:+26477622	MsaT036045.1:CDS
TTACTTTAGACAATGGTGAT+GGG	0.517853	7:+26476846	MsaT036045.1:CDS
TGAGAATAATACTCAAAGAA+AGG	0.521008	7:+26476355	MsaT036045.1:CDS
CCACTAAGATCTGGAGGTGT+AGG	0.531744	7:-26476992	None:intergenic
AACAACCATGGAAGTAGCAT+GGG	0.534265	7:+26476965	MsaT036045.1:CDS
GCATCCCCATGCTACTTCCA+TGG	0.535942	7:-26476970	None:intergenic
GTTGTTCACCAAAATGGAGC+AGG	0.556851	7:+26476403	MsaT036045.1:CDS
TCTTCAGCCACCGTAGGAGA+TGG	0.560949	7:-26476497	None:intergenic
AAATTAAGATCACTAGAAAG+AGG	0.562753	7:+26476756	MsaT036045.1:CDS
TGGTGGTGATTGTGATAACT+TGG	0.565716	7:+26477012	MsaT036045.1:CDS
TTTCTCGACCAAATCTAACA+AGG	0.571412	7:-26476915	None:intergenic
AATATGGCCATCTCCTACGG+TGG	0.571701	7:+26476490	MsaT036045.1:CDS
TACTTTAGACAATGGTGATG+GGG	0.572598	7:+26476847	MsaT036045.1:CDS
TAATAATCCTCCTCCATCGT+TGG	0.573169	7:+26476811	MsaT036045.1:CDS
ATTGGTGCCAACGATGGAGG+AGG	0.576273	7:-26476818	None:intergenic
CAATGACATTGACTCAAACC+TGG	0.576547	7:-26476528	None:intergenic
TAACAACCATGGAAGTAGCA+TGG	0.577578	7:+26476964	MsaT036045.1:CDS
AAAGATATTGGTGCCAACGA+TGG	0.578886	7:-26476824	None:intergenic
GTAGGTGTGTTGCCTCCTCA+AGG	0.582180	7:+26477289	MsaT036045.1:CDS
GCTATAAGAAAAGATTGAAA+GGG	0.593678	7:+26476381	MsaT036045.1:CDS
TGGTGATGGGGTACATTCTG+GGG	0.594600	7:+26476859	MsaT036045.1:CDS
GATATTGGTGCCAACGATGG+AGG	0.597015	7:-26476821	None:intergenic
GCAGCAATATTGATGGAGAT+GGG	0.598875	7:+26477773	MsaT036045.1:CDS
TTCTTTCTCAAGGAAATATG+GGG	0.600624	7:+26477215	MsaT036045.1:CDS
ACATTATTGGTAGCAACGCA+AGG	0.601393	7:+26477350	MsaT036045.1:CDS
CCAACACTAGGATTTGTATG+TGG	0.605205	7:-26477598	None:intergenic
TTCTCGACCAAATCTAACAA+GGG	0.605573	7:-26476914	None:intergenic
CATGAAAATCCAAGCAATGG+TGG	0.610991	7:+26477715	MsaT036045.1:CDS
CCACATGAAAATCCAAGCAA+TGG	0.614633	7:+26477712	MsaT036045.1:CDS
TCACCTGAAAATTCTAGTGG+TGG	0.615267	7:+26477094	MsaT036045.1:CDS
CCACATACAAATCCTAGTGT+TGG	0.620141	7:+26477598	MsaT036045.1:CDS
ATTAGGTCTTCAGCCACCGT+AGG	0.620414	7:-26476503	None:intergenic
TTCCCATTCAAATTTGCATG+TGG	0.620497	7:-26477379	None:intergenic
ATTATTCCGAAGGAAATCCA+GGG	0.624169	7:-26477849	None:intergenic
CCATCACCTGAAAATTCTAG+TGG	0.626301	7:+26477091	MsaT036045.1:CDS
GAAAATCCTAGTGGTGGTGT+AGG	0.627650	7:+26477271	MsaT036045.1:CDS
TCATCACATGAAAATCATAG+TGG	0.635133	7:+26477175	MsaT036045.1:CDS
ATGCGGCATTAAGGCATGTG+CGG	0.636877	7:+26476436	MsaT036045.1:CDS
ATGCATCAAATTGAAAACGA+AGG	0.641960	7:+26476671	MsaT036045.1:CDS
ACACTAGGATTTGTATGTGG+TGG	0.642124	7:-26477595	None:intergenic
AAAGTTGATCAAATGACCAG+TGG	0.646800	7:+26476935	MsaT036045.1:CDS
AGTGGTTTCAATAACAACCA+TGG	0.647385	7:+26476953	MsaT036045.1:CDS
AACACACCTACACCACCACT+AGG	0.650603	7:-26477277	None:intergenic
CCTCCAAAATATCCTTGAGG+AGG	0.656666	7:-26477301	None:intergenic
ATGATACATGTAGCAACATG+TGG	0.657144	7:+26477683	MsaT036045.1:CDS
TGACCTCCAAAATATCCTTG+AGG	0.660910	7:-26477304	None:intergenic
TGGCTGAAGACCTAATAACC+AGG	0.668231	7:+26476510	MsaT036045.1:CDS
TCACCACCACTAAGATCTGG+AGG	0.674015	7:-26476998	None:intergenic
TCACATGAAAATCCTAGTGG+TGG	0.674534	7:+26477265	MsaT036045.1:CDS
AAAGCAACATTACCAACACT+AGG	0.684507	7:-26477610	None:intergenic
CAATCACATGAAAATCCTAG+TGG	0.684612	7:+26477262	MsaT036045.1:CDS
ACACCTCCAGATCTTAGTGG+TGG	0.688719	7:+26476995	MsaT036045.1:CDS
GAGCAGGTGACAATCTTATG+CGG	0.699387	7:+26476419	MsaT036045.1:CDS
ACAACCATGGAAGTAGCATG+GGG	0.707731	7:+26476966	MsaT036045.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	26476314	26477870	26476314	ID=MsaG036045
Chr7	mRNA	26476314	26477870	26476314	ID=MsaT036045.1;Parent=MsaG036045
Chr7	exon	26476314	26477870	26476314	ID=MsaT036045.1.exon1;Parent=MsaT036045.1
Chr7	CDS	26476314	26477870	26476314	ID=cds.MsaT036045.1;Parent=MsaT036045.1

Gene Sequence

>MsaT036045.1

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGCTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGCGGCATTAAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAGGTTTGAGTCAATGTCATTGGATGTACAATCAAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTAGAAGCAAGCCTTGCAAAGATCGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCAGAATCGCTTGATTGCATTTATTCTTGAAAAAATTAAGATCACTAGAAAGAGGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTCCTCCATCGTTGGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTACATTCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGATCAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGGGGATGCCTACACCTCCAGATCTTAGTGGTGGTGATTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAACTTTTATAACGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTGATGCTGCGTTTTTTCAAGATAATTTGGAAGATTTTGATGGTGTCATGGAGATATCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTTCTCAAGGAAATATGGGGCATTTCAGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTATTGGTAGCAACGCAAGGATACTACCACATGCAAATTTGAATGGGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAACATTTGGATACAACATGCAAATTTGAGTGCTGGTAATACATTGCTTCCTCAAGAAAAATTTGGAGACCAATTTAACTTTGAAGATTTTGATAACAATGCAATTAGCAACATGTTGATACCACCACATACAAATCCTAGTGTTGGTAATGTTGCTTTGTCTCATCAAGGAAATTTTGAAGTTCAGGGGAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGAATTTTCATCAAAACAACTTTGGCAGCAATATTGATGGAGATGGGATGCAGAGTTTTAATGCGAACTTTGTTGACAATAATTACAAGAGCAACTTCAACCCTGGATTTCCTTCGGAATAA

Protein sequence

>MsaT036045.1

MTRIRKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIKACAVVFGPGDTKPSIWPSPTVAEDLITRFESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVQNRLIAFILEKIKITRKRSRHLEKEILPLNNPPPSLAPISFTLDNGDGVHSGVNMYGHVLNQQPLLDLVEKVDQMTSGFNNNHGSSMGMPTPPDLSGGDCDNLANQADFGDFDNNFYNGMGIPSPENSSGGFDAAFFQDNLEDFDGVMEISSHENHSGSVHDMFLSQGNMGHFSSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDIIGSNARILPHANLNGNVDLLPPQENFEDQENFGGFDDNIDNIWIQHANLSAGNTLLPQEKFGDQFNFEDFDNNAISNMLIPPHTNPSVGNVALSHQGNFEVQGNFGGFDDDTCSNMWKPPHENPSNGGVDMMNFHQNNFGSNIDGDGMQSFNANFVDNNYKSNFNPGFPSE*