AlfalfaGEDB | MsaG036045

M. sativa ssp. caerulea / MsaG036045

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	XP_013454922.1	81.071	523	90	3	1	518	1	519	0.0	800

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	sp\|Q7XJK8\|PHE2_ARATH	35.652	115	74	0	6	120	2	116	1.32e-18	89.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	tr\|A0A072USW1\|A0A072USW1_MEDTR	81.071	523	90	3	1	518	1	519	0.0	800

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036045	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000722	MsaG036045	0.803786	4.974488e-49	7.332205e-47
MsaG001004	MsaG036045	0.812699	6.395949e-51	1.167071e-48
MsaG001420	MsaG036045	0.806586	1.298214e-49	2.042844e-47
MsaG001878	MsaG036045	0.829191	1.059568e-54	2.996016e-52
MsaG003072	MsaG036045	0.801223	1.669528e-48	2.320404e-46
MsaG003088	MsaG036045	0.805305	2.406874e-49	3.674843e-47
MsaG003381	MsaG036045	0.801795	1.276049e-48	1.796767e-46
MsaG003399	MsaG036045	0.805172	2.565326e-49	3.904833e-47
MsaG003679	MsaG036045	0.822878	3.301985e-53	7.840792e-51
MsaG003998	MsaG036045	0.824826	1.159588e-53	2.903081e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	MtrunA17_Chr4g0008701	81.071	523	90	3	1	518	1	519	0.0	800
MsaG036045	MtrunA17_Chr7g0267601	80.534	524	75	7	1	518	1	503	0.0	787
MsaG036045	MtrunA17_Chr3g0128721	44.254	583	247	8	1	518	1	570	4.43e-132	395
MsaG036045	MtrunA17_Chr8g0361741	52.222	270	125	1	13	282	13	278	4.46e-72	231
MsaG036045	MtrunA17_Chr5g0432691	33.974	156	103	0	7	162	4	159	1.23e-24	100
MsaG036045	MtrunA17_Chr3g0107381	32.727	165	107	2	1	164	1	162	1.00e-22	96.7
MsaG036045	MtrunA17_Chr3g0107331	31.613	155	106	0	6	160	2	156	1.60e-21	91.3
MsaG036045	MtrunA17_Chr8g0351751	36.641	131	81	1	4	132	1	131	1.75e-21	93.6
MsaG036045	MtrunA17_Chr4g0014321	32.692	156	94	2	6	155	3	153	4.59e-21	92.0
MsaG036045	MtrunA17_Chr4g0013041	29.756	205	132	4	7	206	4	201	5.01e-21	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036045	AT2G40210.1	29.341	167	115	2	4	170	1	164	3.15e-20	92.8
MsaG036045	AT1G65300.1	35.652	115	74	0	6	120	2	116	1.34e-19	89.4
MsaG036045	AT3G05860.3	30.464	151	100	3	1	150	1	147	3.32e-17	81.6
MsaG036045	AT3G05860.1	30.464	151	100	3	1	150	1	147	4.03e-17	81.6
MsaG036045	AT5G26650.1	31.579	133	89	2	7	139	2	132	5.52e-17	83.2
MsaG036045	AT3G05860.2	30.464	151	100	3	1	150	1	147	1.45e-16	79.0
MsaG036045	AT1G31630.1	33.913	115	75	1	6	120	2	115	1.78e-16	81.3
MsaG036045	AT5G06500.1	30.000	150	104	1	6	155	3	151	2.70e-16	79.0
MsaG036045	AT5G27960.1	30.075	133	91	2	7	139	2	132	8.73e-16	79.0
MsaG036045	AT1G31640.1	33.043	115	76	1	6	120	2	115	1.15e-15	79.7

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Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATTGGTGCCAACGA+TGG	0.578886	7:-26476824	None:intergenic
AAAGCAACATTACCAACACT+AGG	0.684507	7:-26477610	None:intergenic
AAAGTTGATCAAATGACCAG+TGG	0.646800	7:+26476935	MsaT036045.1:CDS
AAATTAAGATCACTAGAAAG+AGG	0.562753	7:+26476756	MsaT036045.1:CDS
AACAACCATGGAAGTAGCAT+GGG	0.534265	7:+26476965	MsaT036045.1:CDS
AACACACCTACACCACCACT+AGG	0.650603	7:-26477277	None:intergenic
AACTTTGGCAGCAATATTGA+TGG	0.399013	7:+26477766	MsaT036045.1:CDS
AAGGCATGTGCGGTTGTGTT+TGG	0.348949	7:+26476446	MsaT036045.1:CDS
AATATGGCCATCTCCTACGG+TGG	0.571701	7:+26476490	MsaT036045.1:CDS
AATGGTGATGGGGTACATTC+TGG	0.370012	7:+26476857	MsaT036045.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	26476314	26477870	26476314	ID=MsaG036045
Chr7	mRNA	26476314	26477870	26476314	ID=MsaT036045.1;Parent=MsaG036045
Chr7	exon	26476314	26477870	26476314	ID=MsaT036045.1.exon1;Parent=MsaT036045.1
Chr7	CDS	26476314	26477870	26476314	ID=cds.MsaT036045.1;Parent=MsaT036045.1

Gene Sequence

>MsaT036045.1

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGCTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGCGGCATTAAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAGGTTTGAGTCAATGTCATTGGATGTACAATCAAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTAGAAGCAAGCCTTGCAAAGATCGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCAGAATCGCTTGATTGCATTTATTCTTGAAAAAATTAAGATCACTAGAAAGAGGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTCCTCCATCGTTGGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTACATTCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGATCAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGGGGATGCCTACACCTCCAGATCTTAGTGGTGGTGATTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAACTTTTATAACGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTGATGCTGCGTTTTTTCAAGATAATTTGGAAGATTTTGATGGTGTCATGGAGATATCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTTCTCAAGGAAATATGGGGCATTTCAGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTATTGGTAGCAACGCAAGGATACTACCACATGCAAATTTGAATGGGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAACATTTGGATACAACATGCAAATTTGAGTGCTGGTAATACATTGCTTCCTCAAGAAAAATTTGGAGACCAATTTAACTTTGAAGATTTTGATAACAATGCAATTAGCAACATGTTGATACCACCACATACAAATCCTAGTGTTGGTAATGTTGCTTTGTCTCATCAAGGAAATTTTGAAGTTCAGGGGAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGAATTTTCATCAAAACAACTTTGGCAGCAATATTGATGGAGATGGGATGCAGAGTTTTAATGCGAACTTTGTTGACAATAATTACAAGAGCAACTTCAACCCTGGATTTCCTTCGGAATAA

Protein sequence

>MsaT036045.1

MTRIRKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIKACAVVFGPGDTKPSIWPSPTVAEDLITRFESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVQNRLIAFILEKIKITRKRSRHLEKEILPLNNPPPSLAPISFTLDNGDGVHSGVNMYGHVLNQQPLLDLVEKVDQMTSGFNNNHGSSMGMPTPPDLSGGDCDNLANQADFGDFDNNFYNGMGIPSPENSSGGFDAAFFQDNLEDFDGVMEISSHENHSGSVHDMFLSQGNMGHFSSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDIIGSNARILPHANLNGNVDLLPPQENFEDQENFGGFDDNIDNIWIQHANLSAGNTLLPQEKFGDQFNFEDFDNNAISNMLIPPHTNPSVGNVALSHQGNFEVQGNFGGFDDDTCSNMWKPPHENPSNGGVDMMNFHQNNFGSNIDGDGMQSFNANFVDNNYKSNFNPGFPSE*