AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036130 MtrunA17_Chr7g0223361 94.318 176 10 0 1 176 1 176 2.82e-125 349
MsaG036130 MtrunA17_Chr7g0223351 68.786 173 53 1 1 173 1 172 7.43e-84 244
MsaG036130 MtrunA17_Chr7g0273661 61.392 158 60 1 1 157 1 158 2.06e-68 205
MsaG036130 MtrunA17_Chr1g0204971 42.105 171 97 2 2 170 17 187 2.32e-43 142
MsaG036130 MtrunA17_Chr1g0204951 42.857 168 94 2 2 167 17 184 3.74e-43 142
MsaG036130 MtrunA17_Chr5g0394621 41.520 171 96 2 4 170 17 187 2.36e-40 135
MsaG036130 MtrunA17_Chr5g0394631 43.750 176 89 7 3 170 225 398 3.92e-37 132
MsaG036130 MtrunA17_Chr5g0394631 39.881 168 91 3 4 164 17 181 4.21e-35 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036130 AT3G22560.1 45.614 171 90 2 3 170 2 172 2.43e-47 152
MsaG036130 AT2G32020.1 41.954 174 96 3 1 172 12 182 5.59e-46 149
MsaG036130 AT2G32030.1 40.237 169 96 3 6 172 22 187 1.95e-44 145

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTATTGGATTCAACTAT+TGG 0.220333 7:+27796249 MsaT036130.1:CDS
TGCTATTGGATTCAACTATT+GGG 0.279552 7:+27796250 MsaT036130.1:CDS
TGAGAAGTATAAAGCAGATA+TGG 0.323753 7:+27796223 MsaT036130.1:CDS
GACATATTGATTGGCGTAAT+GGG 0.354730 7:-27796151 None:intergenic
ACCACTCCATTGGAATGGTT+TGG 0.355259 7:+27796180 MsaT036130.1:CDS
GCAGATATGGGTTATGCTAT+TGG 0.359042 7:+27796236 MsaT036130.1:CDS
AGCTTGCAACCTTCTCAAAT+CGG 0.366599 7:-27796333 None:intergenic
TAATTCAAAGAAAGAAGCTT+TGG 0.387244 7:+27796103 MsaT036130.1:CDS
CATAGCTTCTCAGAGGGTAT+TGG 0.423997 7:+27796373 MsaT036130.1:CDS
GCTTGCAACCTTCTCAAATC+GGG 0.427428 7:-27796332 None:intergenic
ACGTAGATGATGTGTTATTA+TGG 0.435820 7:+27796036 MsaT036130.1:CDS
AGACATATTGATTGGCGTAA+TGG 0.441572 7:-27796152 None:intergenic
TCTACGTCACTTTCCTTGAA+TGG 0.443643 7:-27796020 None:intergenic
AAGAATCTTCACTGCATTAG+TGG 0.453856 7:-27796285 None:intergenic
GGTCGAATAGTGATCCTTGA+TGG 0.461144 7:-27795999 None:intergenic
CAAAGAGGGTTTGCTCAGAA+AGG 0.466394 7:+27796412 MsaT036130.1:CDS
TTCTCAAATCGGGGAACTCA+TGG 0.488747 7:-27796322 None:intergenic
CAGAGGGTATTGGAAAAGCT+AGG 0.497928 7:+27796383 MsaT036130.1:CDS
GGTCATCAAGACATATTGAT+TGG 0.500106 7:-27796160 None:intergenic
GAGAAGTATAAAGCAGATAT+GGG 0.502094 7:+27796224 MsaT036130.1:CDS
TGTCTTGATGACCACTCCAT+TGG 0.510495 7:+27796170 MsaT036130.1:CDS
GGATTCAACTATTGGGGTCA+AGG 0.510777 7:+27796257 MsaT036130.1:CDS
GATCACTATTCGACCATTCA+AGG 0.514889 7:+27796007 MsaT036130.1:CDS
TGATGACCACTCCATTGGAA+TGG 0.535636 7:+27796175 MsaT036130.1:CDS
GCTATTGGATTCAACTATTG+GGG 0.539184 7:+27796251 MsaT036130.1:CDS
GATTCAACTATTGGGGTCAA+GGG 0.549382 7:+27796258 MsaT036130.1:CDS
ATGAGTTCCCCGATTTGAGA+AGG 0.555146 7:+27796324 MsaT036130.1:CDS
TGGCAATAATAAATCCATCA+AGG 0.562148 7:+27795985 MsaT036130.1:CDS
AATACTAACTAAACAACAGA+AGG 0.576587 7:-27796500 None:intergenic
AAGCTAGGGTTCTACAAAGA+GGG 0.577948 7:+27796398 MsaT036130.1:CDS
AAGAATCCAAACCATTCCAA+TGG 0.587139 7:-27796186 None:intergenic
AGTAACTGAGCATACTCGAT+GGG 0.588466 7:+27796073 MsaT036130.1:CDS
AGAGGGTATTGGAAAAGCTA+GGG 0.597985 7:+27796384 MsaT036130.1:CDS
GATGATGTGTTATTATGGCT+AGG 0.599337 7:+27796041 MsaT036130.1:CDS
TACTTCTCATCATTAGCATG+AGG 0.611961 7:-27796209 None:intergenic
TCCAAACCATTCCAATGGAG+TGG 0.617327 7:-27796181 None:intergenic
GAGTAACTGAGCATACTCGA+TGG 0.628723 7:+27796072 MsaT036130.1:CDS
AAAGCTAGGGTTCTACAAAG+AGG 0.630805 7:+27796397 MsaT036130.1:CDS
CTTGCAACCTTCTCAAATCG+GGG 0.653528 7:-27796331 None:intergenic
TAGAGAACATAGCTTCTCAG+AGG 0.672958 7:+27796366 MsaT036130.1:CDS
AGAGAACATAGCTTCTCAGA+GGG 0.687021 7:+27796367 MsaT036130.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 27795984 27796514 27795984 ID=MsaG036130
Chr7 mRNA 27795984 27796514 27795984 ID=MsaT036130.1;Parent=MsaG036130
Chr7 exon 27795984 27796514 27795984 ID=MsaT036130.1.exon1;Parent=MsaT036130.1
Chr7 CDS 27795984 27796514 27795984 ID=cds.MsaT036130.1;Parent=MsaT036130.1
Gene Sequence

>MsaT036130.1

ATGGCAATAATAAATCCATCAAGGATCACTATTCGACCATTCAAGGAAAGTGACGTAGATGATGTGTTATTATGGCTAGGAGATGAAAGAGTAACTGAGCATACTCGATGGGAAACATGTAATTCAAAGAAAGAAGCTTTGGATTTCATAAAAAATGAATGCATTTACCCATTACGCCAATCAATATGTCTTGATGACCACTCCATTGGAATGGTTTGGATTCTTCCTCATGCTAATGATGAGAAGTATAAAGCAGATATGGGTTATGCTATTGGATTCAACTATTGGGGTCAAGGGATTGCCACTAATGCAGTGAAGATTCTTCTGTCAAAAGTGTTCCATGAGTTCCCCGATTTGAGAAGGTTGCAAGCTTATACTGTTCTAGAGAACATAGCTTCTCAGAGGGTATTGGAAAAGCTAGGGTTCTACAAAGAGGGTTTGCTCAGAAAGGTTTTTTATTTTAAAGGAAACTTTGTGGATTTCTATATTTTTAGCTTTCTTTGGACAGATGAAATTCCTTCTGTTGTTTAG

Protein sequence

>MsaT036130.1

MAIINPSRITIRPFKESDVDDVLLWLGDERVTEHTRWETCNSKKEALDFIKNECIYPLRQSICLDDHSIGMVWILPHANDEKYKADMGYAIGFNYWGQGIATNAVKILLSKVFHEFPDLRRLQAYTVLENIASQRVLEKLGFYKEGLLRKVFYFKGNFVDFYIFSFLWTDEIPSVV*