AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036204


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036204 MtrunA17_Chr4g0045261 89.474 57 5 1 1 57 214 269 1.78e-29 108
MsaG036204 MtrunA17_Chr8g0374701 82.456 57 9 1 1 57 205 260 1.19e-26 100
MsaG036204 MtrunA17_Chr3g0127571 73.684 57 14 1 1 57 215 270 9.50e-25 95.1
MsaG036204 MtrunA17_Chr5g0402551 75.439 57 13 1 1 57 211 266 1.17e-24 94.7
MsaG036204 MtrunA17_Chr7g0276111 73.684 57 14 1 1 57 221 276 1.93e-24 94.4
MsaG036204 MtrunA17_Chr7g0256001 73.684 57 14 1 1 57 218 273 7.49e-24 92.8
MsaG036204 MtrunA17_Chr5g0444181 57.407 54 22 1 4 57 167 219 4.56e-15 66.6
MsaG036204 MtrunA17_Chr5g0405421 55.172 58 24 2 1 57 173 229 1.32e-14 66.2
MsaG036204 MtrunA17_Chr5g0444171 55.556 54 23 1 4 57 168 220 8.95e-14 63.9
MsaG036204 MtrunA17_Chr1g0157131 50.877 57 26 2 1 57 148 202 2.59e-13 62.8
MsaG036204 MtrunA17_Chr3g0098951 53.704 54 24 1 4 57 160 212 4.85e-13 62.0
MsaG036204 MtrunA17_Chr7g0242561 58.000 50 20 1 8 57 136 184 1.11e-12 60.8
MsaG036204 MtrunA17_Chr7g0257751 58.000 50 20 1 8 57 138 186 2.43e-12 60.1
MsaG036204 MtrunA17_Chr4g0059951 58.000 50 20 1 8 57 153 201 8.33e-12 58.5
MsaG036204 MtrunA17_Chr1g0173541 54.000 50 22 1 8 57 132 180 1.98e-11 57.4
MsaG036204 MtrunA17_Chr5g0397101 56.000 50 21 1 8 57 147 195 3.43e-11 56.6
MsaG036204 MtrunA17_Chr1g0200601 54.000 50 22 1 8 57 110 158 5.31e-11 56.2
MsaG036204 MtrunA17_Chr8g0385341 54.000 50 22 1 8 57 110 158 6.78e-11 55.8
MsaG036204 MtrunA17_Chr8g0346071 47.368 57 28 2 1 57 90 144 7.35e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036204 AT3G50530.1 80.702 57 10 1 1 57 225 280 1.55e-26 100
MsaG036204 AT3G50530.2 80.702 57 10 1 1 57 225 280 1.58e-26 100
MsaG036204 AT3G19100.1 80.702 57 10 1 1 57 221 276 3.51e-26 99.8
MsaG036204 AT2G41140.1 78.947 57 11 1 1 57 200 255 3.17e-25 97.1
MsaG036204 AT1G49580.1 84.000 50 8 0 8 57 233 282 6.19e-25 96.3
MsaG036204 AT2G46700.2 75.439 57 13 1 1 57 39 94 1.30e-24 94.4
MsaG036204 AT2G46700.3 75.439 57 13 1 1 57 39 94 1.30e-24 94.4
MsaG036204 AT2G46700.1 75.439 57 13 1 1 57 220 275 1.44e-24 95.1
MsaG036204 AT3G56760.1 75.439 57 13 1 1 57 201 256 7.07e-24 93.2
MsaG036204 AT5G24430.1 70.370 54 16 0 4 57 222 275 1.96e-20 83.2
MsaG036204 AT3G49370.1 68.519 54 17 0 4 57 221 274 5.40e-20 82.0
MsaG036204 AT5G66210.6 58.621 58 22 2 1 57 136 192 8.91e-16 70.1
MsaG036204 AT5G66210.4 58.621 58 22 2 1 57 136 192 8.91e-16 70.1
MsaG036204 AT5G66210.5 58.621 58 22 2 1 57 136 192 9.10e-16 70.1
MsaG036204 AT5G66210.3 58.621 58 22 2 1 57 136 192 9.14e-16 70.1
MsaG036204 AT5G66210.1 58.621 58 22 2 1 57 136 192 9.20e-16 70.1
MsaG036204 AT5G66210.2 58.621 58 22 2 1 57 136 192 9.20e-16 70.1
MsaG036204 AT2G17890.1 58.621 58 22 2 1 57 182 238 2.38e-15 68.9
MsaG036204 AT4G36070.1 53.448 58 25 2 1 57 145 201 3.54e-14 65.5
MsaG036204 AT4G36070.2 53.448 58 25 2 1 57 145 201 3.55e-14 65.5
MsaG036204 AT5G12480.1 62.000 50 18 1 8 57 139 187 7.08e-14 64.7
MsaG036204 AT5G19450.2 62.000 50 18 1 8 57 137 185 1.32e-13 63.9
MsaG036204 AT5G19450.1 62.000 50 18 1 8 57 137 185 1.32e-13 63.9
MsaG036204 AT1G76040.3 58.000 50 20 1 8 57 192 240 1.79e-13 63.5
MsaG036204 AT1G76040.2 58.000 50 20 1 8 57 192 240 1.83e-13 63.5
MsaG036204 AT1G50700.3 60.000 50 19 1 8 57 153 201 3.07e-13 62.8
MsaG036204 AT1G50700.1 60.000 50 19 1 8 57 153 201 3.09e-13 62.8
MsaG036204 AT1G50700.2 60.000 50 19 1 8 57 153 201 3.10e-13 62.8
MsaG036204 AT3G20410.2 56.000 50 21 1 8 57 171 219 1.19e-12 61.2
MsaG036204 AT3G20410.1 56.000 50 21 1 8 57 171 219 1.19e-12 61.2
MsaG036204 AT2G31500.1 54.386 57 24 2 1 57 140 194 1.41e-12 60.8
MsaG036204 AT4G04720.2 56.000 50 21 1 8 57 160 208 1.53e-12 60.8
MsaG036204 AT4G04720.1 56.000 50 21 1 8 57 160 208 1.53e-12 60.8
MsaG036204 AT3G57530.1 58.000 50 20 1 8 57 143 191 2.55e-12 60.1
MsaG036204 AT3G57530.2 58.000 50 20 1 8 57 143 191 2.88e-12 60.1
MsaG036204 AT1G61950.1 54.000 50 22 1 8 57 178 226 3.49e-12 59.7
MsaG036204 AT2G41860.2 56.000 50 21 1 8 57 134 182 3.99e-12 59.7
MsaG036204 AT2G41860.1 56.000 50 21 1 8 57 134 182 4.03e-12 59.7
MsaG036204 AT3G51850.1 56.000 50 21 1 8 57 134 182 4.95e-12 59.3
MsaG036204 AT4G21940.1 54.000 50 22 1 8 57 182 230 7.41e-12 58.9
MsaG036204 AT4G21940.3 54.000 50 22 1 8 57 182 230 7.44e-12 58.9
MsaG036204 AT4G21940.2 54.000 50 22 1 8 57 182 230 7.48e-12 58.9
MsaG036204 AT5G23580.1 58.000 50 20 1 8 57 102 150 1.02e-11 58.5
MsaG036204 AT4G04740.4 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT4G04740.6 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT4G04740.5 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT4G04740.3 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT4G04740.1 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT4G04740.7 54.000 50 22 1 8 57 149 197 1.11e-11 58.5
MsaG036204 AT3G51850.3 56.000 50 21 1 8 57 134 182 1.15e-11 58.5
MsaG036204 AT3G51850.2 56.000 50 21 1 8 57 134 182 1.69e-11 57.8
MsaG036204 AT4G04740.2 54.000 50 22 1 8 57 149 197 1.96e-11 57.8
MsaG036204 AT1G74740.1 56.000 50 21 1 8 57 139 187 3.97e-11 57.0
MsaG036204 AT1G35670.1 54.000 50 22 1 8 57 106 154 8.40e-11 55.8
MsaG036204 AT4G09570.1 54.000 50 22 1 8 57 105 153 9.18e-11 55.8

Find 10 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGTTTCAGGTTATGTGAA+GGG 0.515873 7:-29140822 MsaT036204.1:intron
AATTTGTACCATGACAGCCT+TGG 0.548593 7:+29140546 None:intergenic
AGATGATGCCAAGGCTGTCA+TGG 0.554908 7:-29140554 MsaT036204.1:CDS
CGACGTTTCAGGTTATGTGA+AGG 0.570325 7:-29140823 MsaT036204.1:intron
ACGTTTCAGGTTATGTGAAG+GGG 0.578083 7:-29140821 MsaT036204.1:intron
ATACTCAGAAGATGATGCCA+AGG 0.618920 7:-29140563 MsaT036204.1:CDS
CGTTTCAGGTTATGTGAAGG+GGG 0.632420 7:-29140820 MsaT036204.1:intron
TATTAGACATGATACTGTCA+AGG 0.648573 7:-29140792 MsaT036204.1:intron
GCACAGAGATCTTAAGCCTG+AGG 0.658568 7:-29140485 MsaT036204.1:intron
AAATGTATGTAGTGACACCA+AGG 0.670047 7:-29140944 MsaT036204.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 29140415 29140964 29140415 ID=MsaG036204
Chr7 mRNA 29140415 29140964 29140415 ID=MsaT036204.1;Parent=MsaG036204
Chr7 exon 29140415 29140456 29140415 ID=MsaT036204.1.exon4;Parent=MsaT036204.1
Chr7 CDS 29140415 29140456 29140415 ID=cds.MsaT036204.1;Parent=MsaT036204.1
Chr7 exon 29140486 29140594 29140486 ID=MsaT036204.1.exon3;Parent=MsaT036204.1
Chr7 CDS 29140486 29140594 29140486 ID=cds.MsaT036204.1;Parent=MsaT036204.1
Chr7 exon 29140793 29140834 29140793 ID=MsaT036204.1.exon2;Parent=MsaT036204.1
Chr7 CDS 29140793 29140834 29140793 ID=cds.MsaT036204.1;Parent=MsaT036204.1
Chr7 exon 29140945 29140964 29140945 ID=MsaT036204.1.exon1;Parent=MsaT036204.1
Chr7 CDS 29140945 29140964 29140945 ID=cds.MsaT036204.1;Parent=MsaT036204.1
Gene Sequence

>MsaT036204.1

ATGTATGTAGTGACACCAAGGTTATGTGAAGGGGGAGAGCTATTAGACATGATACTGTCAAGAGGAGGGAAATACTCAGAAGATGATGCCAAGGCTGTCATGGTACAAATTCTAAATGTTGTTGCATTTTGTCATCTTCAGAGTGTGGTGCACAGAGATCTTAAGCCTGAGATGGTTAATGTCTTAGAGTCTGCTATAGTTAATCATATTTAA

Protein sequence

>MsaT036204.1

MYVVTPRLCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQSVVHRDLKPEMVNVLESAIVNHI*