Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036257 | AES78253.1 | 88.455 | 589 | 63 | 1 | 31 | 614 | 14 | 602 | 0.0 | 1003 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036257 | sp|Q9ZWJ9|ARR2_ARATH | 37.500 | 272 | 140 | 6 | 6 | 253 | 26 | 291 | 7.20e-48 | 181 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036257 | tr|G7L033|G7L033_MEDTR | 88.455 | 589 | 63 | 1 | 31 | 614 | 14 | 602 | 0.0 | 1003 |
Gene ID | Type | Classification |
---|---|---|
MsaG036257 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036257 | MtrunA17_Chr7g0223971 | 82.239 | 518 | 54 | 2 | 86 | 565 | 1 | 518 | 0.0 | 795 |
MsaG036257 | MtrunA17_Chr7g0223991 | 77.570 | 214 | 28 | 3 | 241 | 452 | 24 | 219 | 1.38e-103 | 313 |
MsaG036257 | MtrunA17_Chr6g0473731 | 44.266 | 436 | 170 | 12 | 84 | 498 | 10 | 393 | 2.50e-93 | 294 |
MsaG036257 | MtrunA17_Chr2g0294911 | 40.171 | 234 | 128 | 4 | 9 | 230 | 34 | 267 | 9.00e-46 | 171 |
MsaG036257 | MtrunA17_Chr4g0067981 | 36.441 | 236 | 136 | 2 | 9 | 230 | 36 | 271 | 7.62e-45 | 169 |
MsaG036257 | MtrunA17_Chr1g0149841 | 36.842 | 247 | 126 | 3 | 9 | 232 | 10 | 249 | 7.49e-44 | 164 |
MsaG036257 | MtrunA17_Chr1g0161431 | 33.955 | 268 | 152 | 5 | 9 | 252 | 16 | 282 | 6.25e-43 | 163 |
MsaG036257 | MtrunA17_Chr3g0123131 | 33.569 | 283 | 166 | 5 | 9 | 269 | 18 | 300 | 8.13e-43 | 162 |
MsaG036257 | MtrunA17_Chr8g0376881 | 34.586 | 266 | 156 | 5 | 1 | 248 | 22 | 287 | 7.06e-42 | 159 |
MsaG036257 | MtrunA17_Chr3g0137101 | 34.259 | 324 | 171 | 8 | 9 | 293 | 13 | 333 | 1.52e-41 | 159 |
MsaG036257 | MtrunA17_Chr7g0275401 | 36.820 | 239 | 132 | 3 | 10 | 230 | 11 | 248 | 2.53e-40 | 149 |
MsaG036257 | MtrunA17_Chr6g0471041 | 35.124 | 242 | 125 | 3 | 5 | 236 | 15 | 234 | 7.67e-39 | 148 |
MsaG036257 | MtrunA17_Chr7g0275891 | 33.846 | 260 | 129 | 5 | 9 | 232 | 10 | 262 | 1.56e-38 | 145 |
MsaG036257 | MtrunA17_Chr4g0009901 | 35.398 | 226 | 126 | 3 | 9 | 230 | 15 | 224 | 1.57e-38 | 143 |
MsaG036257 | MtrunA17_Chr4g0009851 | 34.694 | 245 | 146 | 5 | 9 | 251 | 16 | 248 | 1.62e-38 | 144 |
MsaG036257 | MtrunA17_Chr2g0304841 | 33.969 | 262 | 142 | 5 | 9 | 241 | 23 | 282 | 1.84e-37 | 148 |
MsaG036257 | MtrunA17_Chr4g0074411 | 33.745 | 243 | 148 | 2 | 9 | 238 | 23 | 265 | 6.77e-36 | 142 |
MsaG036257 | MtrunA17_Chr1g0149851 | 34.231 | 260 | 126 | 4 | 9 | 230 | 10 | 262 | 4.77e-35 | 139 |
MsaG036257 | MtrunA17_Chr4g0009981 | 35.263 | 190 | 104 | 2 | 49 | 234 | 2 | 176 | 5.28e-35 | 133 |
MsaG036257 | MtrunA17_Chr4g0074401 | 31.801 | 261 | 162 | 3 | 9 | 253 | 22 | 282 | 2.65e-34 | 137 |
MsaG036257 | MtrunA17_Chr3g0134461 | 36.111 | 216 | 101 | 3 | 9 | 223 | 13 | 192 | 6.78e-34 | 127 |
MsaG036257 | MtrunA17_Chr3g0134481 | 34.101 | 217 | 97 | 2 | 9 | 225 | 13 | 183 | 2.58e-33 | 126 |
MsaG036257 | MtrunA17_Chr4g0074421 | 33.155 | 187 | 114 | 2 | 53 | 228 | 1 | 187 | 2.07e-26 | 107 |
MsaG036257 | MtrunA17_Chr1g0149831 | 34.211 | 190 | 92 | 4 | 66 | 232 | 4 | 183 | 2.98e-25 | 104 |
MsaG036257 | MtrunA17_Chr8g0391911 | 29.344 | 259 | 145 | 7 | 6 | 238 | 11 | 257 | 3.93e-21 | 93.6 |
MsaG036257 | MtrunA17_Chr4g0009991 | 37.121 | 132 | 61 | 3 | 97 | 223 | 2 | 116 | 6.36e-20 | 85.9 |
MsaG036257 | MtrunA17_Chr4g0031961 | 42.857 | 112 | 48 | 4 | 151 | 252 | 101 | 206 | 1.27e-18 | 87.0 |
MsaG036257 | MtrunA17_Chr7g0255711 | 49.296 | 71 | 36 | 0 | 163 | 233 | 80 | 150 | 3.30e-18 | 85.9 |
MsaG036257 | MtrunA17_Chr4g0011071 | 29.139 | 151 | 88 | 3 | 54 | 200 | 39 | 174 | 4.09e-18 | 82.4 |
MsaG036257 | MtrunA17_Chr8g0383961 | 28.571 | 224 | 117 | 6 | 10 | 230 | 20 | 203 | 1.82e-17 | 82.8 |
MsaG036257 | MtrunA17_Chr4g0040481 | 61.111 | 54 | 21 | 0 | 173 | 226 | 157 | 210 | 6.98e-15 | 77.0 |
MsaG036257 | MtrunA17_Chr2g0324891 | 43.333 | 90 | 50 | 1 | 137 | 226 | 125 | 213 | 1.49e-14 | 76.3 |
MsaG036257 | MtrunA17_Chr5g0400241 | 53.333 | 60 | 28 | 0 | 173 | 232 | 310 | 369 | 6.80e-14 | 74.7 |
MsaG036257 | MtrunA17_Chr3g0091641 | 28.188 | 149 | 104 | 1 | 6 | 151 | 22 | 170 | 7.77e-14 | 74.7 |
MsaG036257 | MtrunA17_Chr4g0054981 | 50.794 | 63 | 31 | 0 | 173 | 235 | 309 | 371 | 7.81e-14 | 74.3 |
MsaG036257 | MtrunA17_Chr4g0061021 | 27.517 | 149 | 105 | 1 | 6 | 151 | 31 | 179 | 1.00e-13 | 74.3 |
MsaG036257 | MtrunA17_Chr1g0181811 | 28.814 | 118 | 81 | 1 | 9 | 123 | 86 | 203 | 2.12e-12 | 70.1 |
MsaG036257 | MtrunA17_Chr6g0456631 | 33.058 | 121 | 78 | 2 | 6 | 124 | 11 | 130 | 4.63e-12 | 64.7 |
MsaG036257 | MtrunA17_Chr7g0276361 | 30.508 | 118 | 79 | 1 | 9 | 123 | 15 | 132 | 5.48e-12 | 68.6 |
MsaG036257 | MtrunA17_Chr6g0469321 | 62.791 | 43 | 16 | 0 | 190 | 232 | 70 | 112 | 6.41e-12 | 64.7 |
MsaG036257 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 24 | 1 | 174 | 227 | 15 | 69 | 1.23e-11 | 66.6 |
MsaG036257 | MtrunA17_Chr6g0461641 | 54.545 | 55 | 24 | 1 | 174 | 227 | 42 | 96 | 1.56e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036257 | AT3G16857.1 | 35.563 | 284 | 141 | 5 | 6 | 253 | 35 | 312 | 1.32e-46 | 175 |
MsaG036257 | AT3G16857.2 | 35.563 | 284 | 141 | 5 | 6 | 253 | 35 | 312 | 1.68e-46 | 174 |
MsaG036257 | AT5G07210.2 | 35.336 | 283 | 139 | 7 | 10 | 250 | 18 | 298 | 3.18e-43 | 164 |
MsaG036257 | AT2G25180.1 | 29.540 | 413 | 225 | 11 | 9 | 381 | 18 | 404 | 6.79e-41 | 157 |
MsaG036257 | AT2G01760.1 | 36.290 | 248 | 135 | 5 | 6 | 230 | 9 | 256 | 1.48e-40 | 152 |
MsaG036257 | AT5G07210.1 | 34.364 | 291 | 139 | 8 | 10 | 250 | 18 | 306 | 1.49e-40 | 157 |
MsaG036257 | AT3G16857.3 | 36.032 | 247 | 116 | 5 | 43 | 253 | 2 | 242 | 1.78e-40 | 156 |
MsaG036257 | AT4G31920.1 | 35.371 | 229 | 148 | 0 | 9 | 237 | 18 | 246 | 2.91e-40 | 155 |
MsaG036257 | AT1G67710.1 | 35.433 | 254 | 143 | 5 | 9 | 241 | 12 | 265 | 2.95e-37 | 145 |
MsaG036257 | AT2G01760.2 | 35.802 | 243 | 129 | 6 | 11 | 230 | 46 | 284 | 5.34e-35 | 137 |
MsaG036257 | AT2G27070.1 | 32.168 | 286 | 147 | 7 | 10 | 250 | 18 | 301 | 1.03e-34 | 139 |
MsaG036257 | AT5G58080.1 | 29.082 | 392 | 217 | 12 | 9 | 353 | 19 | 396 | 2.61e-33 | 135 |
MsaG036257 | AT5G49240.1 | 31.197 | 234 | 138 | 3 | 9 | 223 | 43 | 272 | 2.80e-30 | 121 |
MsaG036257 | AT3G62670.1 | 33.624 | 229 | 139 | 6 | 9 | 226 | 42 | 268 | 1.73e-28 | 119 |
MsaG036257 | AT2G01760.3 | 36.126 | 191 | 99 | 4 | 63 | 230 | 1 | 191 | 6.57e-28 | 115 |
MsaG036257 | AT1G49190.1 | 31.579 | 247 | 144 | 6 | 7 | 231 | 33 | 276 | 8.57e-27 | 113 |
MsaG036257 | AT1G67710.2 | 35.533 | 197 | 106 | 5 | 66 | 241 | 4 | 200 | 1.58e-25 | 110 |
MsaG036257 | AT1G67710.3 | 35.556 | 180 | 95 | 5 | 83 | 241 | 12 | 191 | 7.47e-21 | 96.3 |
MsaG036257 | AT5G59570.2 | 38.053 | 113 | 59 | 2 | 132 | 233 | 88 | 200 | 1.49e-18 | 87.0 |
MsaG036257 | AT5G59570.1 | 38.053 | 113 | 59 | 2 | 132 | 233 | 88 | 200 | 1.49e-18 | 87.0 |
MsaG036257 | AT3G10760.1 | 47.297 | 74 | 39 | 0 | 160 | 233 | 91 | 164 | 2.52e-18 | 87.0 |
MsaG036257 | AT2G40970.1 | 50.725 | 69 | 34 | 0 | 165 | 233 | 96 | 164 | 4.55e-18 | 84.7 |
MsaG036257 | AT5G05090.1 | 47.222 | 72 | 38 | 0 | 162 | 233 | 69 | 140 | 5.65e-18 | 84.7 |
MsaG036257 | AT3G46640.2 | 51.562 | 64 | 31 | 0 | 170 | 233 | 140 | 203 | 7.16e-18 | 85.5 |
MsaG036257 | AT3G46640.1 | 51.562 | 64 | 31 | 0 | 170 | 233 | 140 | 203 | 7.16e-18 | 85.5 |
MsaG036257 | AT3G46640.3 | 49.296 | 71 | 34 | 1 | 165 | 233 | 133 | 203 | 1.28e-17 | 84.7 |
MsaG036257 | AT5G44190.1 | 62.295 | 61 | 21 | 1 | 166 | 226 | 141 | 199 | 1.80e-16 | 82.0 |
MsaG036257 | AT5G44190.2 | 62.295 | 61 | 21 | 1 | 166 | 226 | 141 | 199 | 1.82e-16 | 81.6 |
MsaG036257 | AT1G49190.2 | 32.231 | 121 | 82 | 0 | 7 | 127 | 33 | 153 | 2.49e-15 | 79.7 |
MsaG036257 | AT2G20570.1 | 59.259 | 54 | 22 | 0 | 173 | 226 | 152 | 205 | 3.97e-14 | 75.1 |
MsaG036257 | AT2G20570.2 | 60.784 | 51 | 20 | 0 | 176 | 226 | 171 | 221 | 2.26e-13 | 73.2 |
MsaG036257 | AT5G61380.1 | 28.571 | 126 | 87 | 1 | 6 | 128 | 17 | 142 | 2.31e-13 | 73.6 |
MsaG036257 | AT4G18020.3 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 4.99e-13 | 72.4 |
MsaG036257 | AT4G18020.2 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 4.99e-13 | 72.4 |
MsaG036257 | AT4G18020.1 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 4.99e-13 | 72.4 |
MsaG036257 | AT4G18020.6 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 4.99e-13 | 72.4 |
MsaG036257 | AT4G18020.9 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 4.99e-13 | 72.4 |
MsaG036257 | AT4G18020.8 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT4G18020.11 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT4G18020.4 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT4G18020.5 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT4G18020.10 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT4G18020.7 | 48.387 | 62 | 32 | 0 | 174 | 235 | 296 | 357 | 5.09e-13 | 72.0 |
MsaG036257 | AT5G60100.7 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 6.62e-12 | 68.2 |
MsaG036257 | AT5G60100.6 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 6.62e-12 | 68.2 |
MsaG036257 | AT5G60100.4 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 6.62e-12 | 68.2 |
MsaG036257 | AT5G60100.5 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 8.17e-12 | 68.6 |
MsaG036257 | AT5G60100.3 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 8.17e-12 | 68.6 |
MsaG036257 | AT5G60100.1 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 8.17e-12 | 68.6 |
MsaG036257 | AT5G60100.2 | 31.356 | 118 | 78 | 1 | 9 | 123 | 65 | 182 | 1.03e-11 | 68.2 |
MsaG036257 | AT3G04450.3 | 52.632 | 57 | 26 | 1 | 171 | 226 | 235 | 291 | 1.45e-11 | 66.2 |
MsaG036257 | AT3G04450.1 | 46.479 | 71 | 31 | 2 | 171 | 234 | 235 | 305 | 2.49e-11 | 66.6 |
MsaG036257 | AT3G04450.4 | 46.479 | 71 | 31 | 2 | 171 | 234 | 195 | 265 | 2.68e-11 | 66.2 |
MsaG036257 | AT3G04450.2 | 46.479 | 71 | 31 | 2 | 171 | 234 | 195 | 265 | 2.68e-11 | 66.2 |
MsaG036257 | AT5G29000.1 | 40.506 | 79 | 46 | 1 | 171 | 248 | 185 | 263 | 3.42e-11 | 65.9 |
MsaG036257 | AT5G29000.3 | 40.506 | 79 | 46 | 1 | 171 | 248 | 185 | 263 | 3.42e-11 | 65.9 |
MsaG036257 | AT5G29000.4 | 44.286 | 70 | 38 | 1 | 171 | 239 | 228 | 297 | 3.54e-11 | 65.1 |
MsaG036257 | AT3G04030.1 | 52.727 | 55 | 25 | 1 | 174 | 227 | 45 | 99 | 4.81e-11 | 65.5 |
MsaG036257 | AT3G04030.3 | 52.727 | 55 | 25 | 1 | 174 | 227 | 45 | 99 | 5.22e-11 | 65.5 |
Find 102 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGATTCTATTTCTAATATT+AGG | 0.147775 | 7:-30429461 | MsaT036257.1:CDS |
CTGAAGACTTCAAAGATATT+TGG | 0.172247 | 7:-30431802 | MsaT036257.1:CDS |
ATTGATCTTTAATATGCTTT+TGG | 0.238095 | 7:+30432658 | None:intergenic |
GGACCATGATGATGCTTATT+TGG | 0.240587 | 7:-30436575 | MsaT036257.1:CDS |
GAACTATGAACAATGGATTA+AGG | 0.243060 | 7:-30429584 | MsaT036257.1:CDS |
ACTTACTTTCCAATCCAATT+TGG | 0.246719 | 7:+30431564 | None:intergenic |
CTGCTTGCTATTAACCAAAT+TGG | 0.262572 | 7:-30431578 | MsaT036257.1:CDS |
AGATTCTATTTCTAATATTA+GGG | 0.274157 | 7:-30429460 | MsaT036257.1:CDS |
GTAAGAAACGATAATCCTTT+TGG | 0.277733 | 7:-30429645 | MsaT036257.1:CDS |
AAATGTAGCAAGTCACTTAC+AGG | 0.277878 | 7:-30430410 | MsaT036257.1:intron |
GTGACACACTTACTTATTAT+AGG | 0.282733 | 7:+30432627 | None:intergenic |
CAAAGCATGACGAGCATCTT+TGG | 0.288698 | 7:+30432761 | None:intergenic |
CAACATGATGTGTTGGAAAT+TGG | 0.289454 | 7:+30430027 | None:intergenic |
ATCTCAAAGACGCTAGAAAA+TGG | 0.291584 | 7:-30431857 | MsaT036257.1:CDS |
TTTGGAATTCAGCTGAATAA+TGG | 0.295030 | 7:-30429627 | MsaT036257.1:CDS |
ACTTACTTATTATAGGTATC+TGG | 0.300133 | 7:+30432634 | None:intergenic |
ATTCATGCAGGAATTTGATA+TGG | 0.300210 | 7:-30428442 | MsaT036257.1:intron |
TTAAGAAACAAAAGCTTGTT+TGG | 0.309580 | 7:-30431625 | MsaT036257.1:CDS |
CAAATGGGGAACCATCTAAT+AGG | 0.310117 | 7:-30428596 | MsaT036257.1:CDS |
TTTCCTCAACATAAATTAGA+TGG | 0.318545 | 7:-30429369 | MsaT036257.1:CDS |
AGGATCGGCTCTTCAAGATT+TGG | 0.320002 | 7:-30429982 | MsaT036257.1:CDS |
TTGAAGTCTTCAGCACAAAA+AGG | 0.324880 | 7:+30431812 | None:intergenic |
GGATCTTTGATAAGCACTAA+TGG | 0.346236 | 7:-30429693 | MsaT036257.1:CDS |
CAATTCCCTTATATACAAAA+AGG | 0.349070 | 7:-30430002 | MsaT036257.1:CDS |
AGATATTTGGAAATATGTTA+TGG | 0.355548 | 7:-30431789 | MsaT036257.1:CDS |
CACCTCTTGTTTGATATGCC+AGG | 0.356901 | 7:+30430075 | None:intergenic |
GATCTTGTTGAAGCCTTGTT+TGG | 0.371084 | 7:-30428420 | MsaT036257.1:CDS |
AACTATGAACAATGGATTAA+GGG | 0.373260 | 7:-30429583 | MsaT036257.1:CDS |
GGAGCAGAAATGGTTGGAAT+TGG | 0.379114 | 7:-30429606 | MsaT036257.1:CDS |
GGTTTGGTTCAAGGAGGGTT+TGG | 0.385385 | 7:-30429486 | MsaT036257.1:CDS |
TGCTATTAACCAAATTGGAT+TGG | 0.390260 | 7:-30431573 | MsaT036257.1:CDS |
GGCCATGGTCAAAACAGGTT+TGG | 0.410656 | 7:-30429903 | MsaT036257.1:CDS |
GAAAATGAGCAAAAGTATAA+TGG | 0.418138 | 7:-30429336 | MsaT036257.1:CDS |
TAGTGGTGAACAAGGATTGA+TGG | 0.418771 | 7:-30429802 | MsaT036257.1:CDS |
GTGTTGGAAATTGGTTGAAA+TGG | 0.423793 | 7:+30430036 | None:intergenic |
ATCACTCTTCAAGAAAATGA+AGG | 0.424779 | 7:-30432738 | MsaT036257.1:CDS |
TTACGATGATTCTTGTCATC+AGG | 0.428578 | 7:+30429249 | None:intergenic |
GCTGAATAATGGAGCAGAAA+TGG | 0.428747 | 7:-30429616 | MsaT036257.1:CDS |
CTGCGAGATGTTGAAGAGAA+AGG | 0.429447 | 7:-30430230 | MsaT036257.1:CDS |
TTCAAGATTTGGAACAGGTT+AGG | 0.432005 | 7:-30429971 | MsaT036257.1:CDS |
TTTCATCTGATGGGAATGAA+TGG | 0.436631 | 7:-30432690 | MsaT036257.1:CDS |
CAGTGATGTCTGAAGACAAT+AGG | 0.437039 | 7:-30431889 | MsaT036257.1:CDS |
GGCTCTTCAAGATTTGGAAC+AGG | 0.443284 | 7:-30429976 | MsaT036257.1:CDS |
ATAATGGCCATGGTCAAAAC+AGG | 0.444362 | 7:-30429908 | MsaT036257.1:CDS |
GATGTTGTTGCGGAGAATAA+TGG | 0.456575 | 7:-30429924 | MsaT036257.1:CDS |
TATTGCAGAATTTCATCTGA+TGG | 0.458198 | 7:-30432700 | MsaT036257.1:CDS |
AAGCACCTCAGCTACTAATC+TGG | 0.458994 | 7:-30428547 | MsaT036257.1:intron |
TGGTTCTACTTTCACTAATG+AGG | 0.465096 | 7:-30429316 | MsaT036257.1:CDS |
AGCGTCTTTGAGATTAAACT+TGG | 0.469430 | 7:+30431866 | None:intergenic |
CTTCTTCAAGTTTCTTAACA+AGG | 0.470322 | 7:-30429773 | MsaT036257.1:CDS |
GATTTGGAACAGGTTAGGCT+TGG | 0.482764 | 7:-30429966 | MsaT036257.1:CDS |
CTAGTGCAAATAACAATGAA+AGG | 0.484554 | 7:-30429557 | MsaT036257.1:CDS |
TAGTGCAAATAACAATGAAA+GGG | 0.484951 | 7:-30429556 | MsaT036257.1:CDS |
GCAGGATCAGTTAATAATGA+AGG | 0.491730 | 7:-30429414 | MsaT036257.1:CDS |
GTTGAAGAGAAAGGAATGGT+TGG | 0.491902 | 7:-30430221 | MsaT036257.1:CDS |
TTCATCTGATGGGAATGAAT+GGG | 0.494879 | 7:-30432689 | MsaT036257.1:CDS |
CTTGAATATCTCTCTCTCCT+TGG | 0.495918 | 7:+30431651 | None:intergenic |
ACCTCTTGTTTGATATGCCA+GGG | 0.497863 | 7:+30430076 | None:intergenic |
ATGTAGTTGCAAGGAAATGA+AGG | 0.500225 | 7:-30428624 | MsaT036257.1:intron |
ATTGCAGAATTTCATCTGAT+GGG | 0.501306 | 7:-30432699 | MsaT036257.1:CDS |
ATGGTCCACAATCAAAACTT+TGG | 0.502455 | 7:+30436591 | None:intergenic |
TCTAATATTAGGGGAGGGAG+TGG | 0.503861 | 7:-30429450 | MsaT036257.1:CDS |
TTTCCATCTAATTTATGTTG+AGG | 0.508389 | 7:+30429366 | None:intergenic |
TAGGCTTGGAAAATCAAAGT+TGG | 0.508790 | 7:-30429952 | MsaT036257.1:CDS |
ATTTCTCTGATCACAGAACT+TGG | 0.510262 | 7:+30430152 | None:intergenic |
GTTTGCAAATATTGAAGTGT+TGG | 0.515294 | 7:+30430098 | None:intergenic |
ACATCAGAAGTAAACTTATG+AGG | 0.520784 | 7:+30429666 | None:intergenic |
ATTTCTTGCTAATATACTCA+TGG | 0.525942 | 7:-30436551 | MsaT036257.1:CDS |
TAAATTAGATGGAAATGTTG+TGG | 0.531191 | 7:-30429358 | MsaT036257.1:CDS |
TTCTTCAAGTTTCTTAACAA+GGG | 0.536372 | 7:-30429772 | MsaT036257.1:CDS |
AGCTAGTGGAAGCACCATCA+TGG | 0.545478 | 7:+30429835 | None:intergenic |
TTATTCAGCTGAATTCCAAA+AGG | 0.546390 | 7:+30429630 | None:intergenic |
TCATCATATAGTGGTGAACA+AGG | 0.550445 | 7:-30429810 | MsaT036257.1:CDS |
AATAATGGAGCAGAAATGGT+TGG | 0.555811 | 7:-30429612 | MsaT036257.1:CDS |
TTATATGATATGTAGTTGCA+AGG | 0.557191 | 7:-30428633 | MsaT036257.1:intron |
TCTATTTCTAATATTAGGGG+AGG | 0.557220 | 7:-30429456 | MsaT036257.1:CDS |
AATTTGGTTTGGTTCAAGGA+GGG | 0.563542 | 7:-30429491 | MsaT036257.1:CDS |
GTTGGAAGCCGATGTTGTTG+CGG | 0.566366 | 7:-30429934 | MsaT036257.1:CDS |
GAAGAGAAAGGAATGGTTGG+AGG | 0.566539 | 7:-30430218 | MsaT036257.1:CDS |
AGTGGAAGAGAGTTTCTAGC+AGG | 0.567708 | 7:-30429432 | MsaT036257.1:CDS |
ATTATTCTCCGCAACAACAT+CGG | 0.578561 | 7:+30429926 | None:intergenic |
ATGCCAAATAAGCATCATCA+TGG | 0.579548 | 7:+30436572 | None:intergenic |
CTATTTCTAATATTAGGGGA+GGG | 0.586359 | 7:-30429455 | MsaT036257.1:CDS |
AAATTTGGTTTGGTTCAAGG+AGG | 0.591953 | 7:-30429492 | MsaT036257.1:CDS |
GGAATTGGAACTATGAACAA+TGG | 0.591999 | 7:-30429591 | MsaT036257.1:CDS |
ACTATATGATGAAAAGCTAG+TGG | 0.594596 | 7:+30429821 | None:intergenic |
GATTCTATTTCTAATATTAG+GGG | 0.598018 | 7:-30429459 | MsaT036257.1:CDS |
AATTGGTCAACATGATGTGT+TGG | 0.598362 | 7:+30430020 | None:intergenic |
TTGCTAATATACTCATGGCA+TGG | 0.599578 | 7:-30436546 | MsaT036257.1:CDS |
AGAAAGAGTAAAGAATGCCA+AGG | 0.604346 | 7:-30431668 | MsaT036257.1:CDS |
GACATTAGAAACCAAAATCA+CGG | 0.605831 | 7:-30429735 | MsaT036257.1:CDS |
ACTTCAATATTTGCAAACCC+TGG | 0.607854 | 7:-30430093 | MsaT036257.1:CDS |
TTGGTACTATAGAAGACAAG+AGG | 0.611066 | 7:-30428401 | MsaT036257.1:CDS |
AGTGCAAATAACAATGAAAG+GGG | 0.643068 | 7:-30429555 | MsaT036257.1:CDS |
TGGTACTATAGAAGACAAGA+GGG | 0.647456 | 7:-30428400 | MsaT036257.1:CDS |
CTCATGGCATGGCAATACAA+AGG | 0.648754 | 7:-30436535 | MsaT036257.1:intron |
ACCCTGGCATATCAAACAAG+AGG | 0.650777 | 7:-30430077 | MsaT036257.1:CDS |
ACTTACCAGATTAGTAGCTG+AGG | 0.652697 | 7:+30428542 | None:intergenic |
AGATGTTGAAGAGAAAGGAA+TGG | 0.660542 | 7:-30430225 | MsaT036257.1:CDS |
GTCTTCTATAGTACCAAACA+AGG | 0.672696 | 7:+30428407 | None:intergenic |
GTTGCGGAGAATAATGGCCA+TGG | 0.690083 | 7:-30429918 | MsaT036257.1:CDS |
TGACAAGAATCATCGTAACG+AGG | 0.748080 | 7:-30429244 | MsaT036257.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 30428395 | 30436635 | 30428395 | ID=MsaG036257 |
Chr7 | mRNA | 30428395 | 30436635 | 30428395 | ID=MsaT036257.1;Parent=MsaG036257 |
Chr7 | exon | 30428395 | 30428454 | 30428395 | ID=MsaT036257.1.exon7;Parent=MsaT036257.1 |
Chr7 | CDS | 30428395 | 30428454 | 30428395 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30428548 | 30428640 | 30428548 | ID=MsaT036257.1.exon6;Parent=MsaT036257.1 |
Chr7 | CDS | 30428548 | 30428640 | 30428548 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30429245 | 30430267 | 30429245 | ID=MsaT036257.1.exon5;Parent=MsaT036257.1 |
Chr7 | CDS | 30429245 | 30430267 | 30429245 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30430411 | 30430487 | 30430411 | ID=MsaT036257.1.exon4;Parent=MsaT036257.1 |
Chr7 | CDS | 30430411 | 30430487 | 30430411 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30431570 | 30431908 | 30431570 | ID=MsaT036257.1.exon3;Parent=MsaT036257.1 |
Chr7 | CDS | 30431570 | 30431908 | 30431570 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30432640 | 30432792 | 30432640 | ID=MsaT036257.1.exon2;Parent=MsaT036257.1 |
Chr7 | CDS | 30432640 | 30432792 | 30432640 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Chr7 | exon | 30436536 | 30436635 | 30436536 | ID=MsaT036257.1.exon1;Parent=MsaT036257.1 |
Chr7 | CDS | 30436536 | 30436635 | 30436536 | ID=cds.MsaT036257.1;Parent=MsaT036257.1 |
Gene Sequence |
Protein sequence |