Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036284 | OAY85237.1 | 55.254 | 295 | 100 | 4 | 19 | 311 | 17 | 281 | 3.75e-109 | 335 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036284 | sp|Q9LTK3|HDG7_ARATH | 34.771 | 371 | 166 | 6 | 21 | 316 | 61 | 430 | 2.19e-62 | 214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036284 | tr|A0A199W6Z0|A0A199W6Z0_ANACO | 55.254 | 295 | 100 | 4 | 19 | 311 | 17 | 281 | 1.79e-109 | 335 |
Gene ID | Type | Classification |
---|---|---|
MsaG036284 | TF | HB-HD-ZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004570 | MsaG036284 | 0.805417 | 2.280830e-49 | 3.491434e-47 |
MsaG036284 | MsaG043116 | 0.800018 | 2.931653e-48 | 3.965458e-46 |
MsaG016974 | MsaG036284 | 0.829292 | 1.001891e-54 | 2.841193e-52 |
MsaG020119 | MsaG036284 | 0.806143 | 1.607491e-49 | 2.503094e-47 |
MsaG028661 | MsaG036284 | 0.808665 | 4.720481e-50 | 7.806117e-48 |
MsaG029464 | MsaG036284 | 0.811851 | 9.773948e-51 | 1.746422e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036284 | MtrunA17_Chr7g0224451 | 82.500 | 200 | 26 | 3 | 130 | 322 | 206 | 403 | 9.92e-112 | 332 |
MsaG036284 | MtrunA17_Chr7g0224451 | 65.441 | 136 | 35 | 2 | 1 | 136 | 1 | 124 | 3.91e-49 | 171 |
MsaG036284 | MtrunA17_Chr6g0481041 | 75.000 | 180 | 44 | 1 | 136 | 314 | 277 | 456 | 1.04e-92 | 292 |
MsaG036284 | MtrunA17_Chr6g0481041 | 64.865 | 148 | 40 | 1 | 1 | 136 | 1 | 148 | 1.29e-53 | 187 |
MsaG036284 | MtrunA17_Chr7g0224481 | 83.088 | 136 | 15 | 2 | 130 | 259 | 206 | 339 | 1.87e-72 | 228 |
MsaG036284 | MtrunA17_Chr7g0224481 | 65.441 | 136 | 35 | 2 | 1 | 136 | 1 | 124 | 4.25e-50 | 171 |
MsaG036284 | MtrunA17_Chr5g0394111 | 31.933 | 357 | 176 | 7 | 24 | 315 | 40 | 394 | 2.42e-53 | 186 |
MsaG036284 | MtrunA17_Chr5g0410711 | 47.783 | 203 | 99 | 7 | 120 | 318 | 320 | 519 | 1.51e-51 | 182 |
MsaG036284 | MtrunA17_Chr5g0410711 | 47.368 | 133 | 69 | 1 | 5 | 136 | 77 | 209 | 9.08e-35 | 135 |
MsaG036284 | MtrunA17_Chr8g0350321 | 50.000 | 182 | 88 | 3 | 143 | 322 | 374 | 554 | 1.01e-50 | 181 |
MsaG036284 | MtrunA17_Chr8g0350321 | 55.000 | 120 | 54 | 0 | 17 | 136 | 115 | 234 | 9.65e-38 | 144 |
MsaG036284 | MtrunA17_Chr2g0322731 | 52.000 | 175 | 79 | 3 | 141 | 314 | 342 | 512 | 1.16e-50 | 180 |
MsaG036284 | MtrunA17_Chr2g0322731 | 50.781 | 128 | 63 | 0 | 19 | 146 | 102 | 229 | 3.38e-35 | 136 |
MsaG036284 | MtrunA17_Chr4g0024351 | 51.397 | 179 | 81 | 4 | 138 | 314 | 297 | 471 | 2.53e-50 | 179 |
MsaG036284 | MtrunA17_Chr4g0024351 | 44.654 | 159 | 86 | 1 | 2 | 158 | 43 | 201 | 2.74e-36 | 139 |
MsaG036284 | MtrunA17_Chr7g0246631 | 49.727 | 183 | 88 | 4 | 143 | 322 | 346 | 527 | 5.76e-50 | 178 |
MsaG036284 | MtrunA17_Chr7g0246631 | 55.833 | 120 | 53 | 0 | 17 | 136 | 91 | 210 | 1.80e-38 | 145 |
MsaG036284 | MtrunA17_Chr2g0292761 | 46.512 | 172 | 89 | 2 | 142 | 312 | 135 | 304 | 7.18e-46 | 164 |
MsaG036284 | MtrunA17_Chr1g0203671 | 44.886 | 176 | 94 | 3 | 143 | 316 | 357 | 531 | 1.73e-44 | 163 |
MsaG036284 | MtrunA17_Chr1g0203671 | 54.167 | 120 | 55 | 0 | 17 | 136 | 95 | 214 | 3.21e-35 | 136 |
MsaG036284 | MtrunA17_Chr7g0224431 | 58.571 | 140 | 15 | 3 | 130 | 269 | 24 | 120 | 6.15e-42 | 142 |
MsaG036284 | MtrunA17_Chr2g0331581 | 38.220 | 191 | 116 | 2 | 138 | 327 | 359 | 548 | 6.93e-42 | 155 |
MsaG036284 | MtrunA17_Chr2g0331581 | 47.154 | 123 | 63 | 1 | 21 | 141 | 143 | 265 | 3.91e-28 | 115 |
MsaG036284 | MtrunA17_Chr2g0292731 | 44.571 | 175 | 95 | 2 | 139 | 312 | 117 | 290 | 6.03e-41 | 150 |
MsaG036284 | MtrunA17_Chr2g0292741 | 44.444 | 171 | 93 | 2 | 143 | 312 | 113 | 282 | 7.80e-40 | 147 |
MsaG036284 | MtrunA17_Chr5g0419821 | 60.177 | 113 | 45 | 0 | 24 | 136 | 41 | 153 | 2.42e-38 | 135 |
MsaG036284 | MtrunA17_Chr6g0472471 | 39.655 | 174 | 102 | 3 | 143 | 314 | 332 | 504 | 1.66e-36 | 140 |
MsaG036284 | MtrunA17_Chr6g0472471 | 49.138 | 116 | 59 | 0 | 21 | 136 | 73 | 188 | 4.87e-32 | 127 |
MsaG036284 | MtrunA17_Chr2g0319671 | 36.782 | 174 | 101 | 4 | 139 | 311 | 103 | 268 | 2.05e-28 | 112 |
MsaG036284 | MtrunA17_Chr7g0224491 | 80.645 | 62 | 11 | 1 | 262 | 322 | 1 | 62 | 3.04e-26 | 106 |
MsaG036284 | MtrunA17_Chr2g0319691 | 45.714 | 105 | 52 | 4 | 208 | 311 | 9 | 109 | 6.37e-20 | 85.5 |
MsaG036284 | MtrunA17_Chr2g0304191 | 40.476 | 84 | 50 | 0 | 143 | 226 | 50 | 133 | 3.42e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036284 | AT5G52170.2 | 35.040 | 371 | 165 | 6 | 21 | 316 | 61 | 430 | 7.00e-64 | 215 |
MsaG036284 | AT5G52170.3 | 34.771 | 371 | 166 | 6 | 21 | 316 | 61 | 430 | 2.22e-63 | 214 |
MsaG036284 | AT5G52170.1 | 34.771 | 371 | 166 | 6 | 21 | 316 | 61 | 430 | 2.22e-63 | 214 |
MsaG036284 | AT4G17710.1 | 35.340 | 382 | 163 | 9 | 19 | 318 | 90 | 469 | 2.75e-60 | 206 |
MsaG036284 | AT1G73360.1 | 52.174 | 184 | 84 | 2 | 134 | 316 | 281 | 461 | 2.65e-59 | 203 |
MsaG036284 | AT1G73360.1 | 58.503 | 147 | 61 | 0 | 19 | 165 | 34 | 180 | 5.99e-47 | 169 |
MsaG036284 | AT1G17920.2 | 51.397 | 179 | 83 | 2 | 139 | 316 | 266 | 441 | 1.32e-54 | 190 |
MsaG036284 | AT1G17920.2 | 63.793 | 116 | 42 | 0 | 21 | 136 | 25 | 140 | 2.36e-43 | 159 |
MsaG036284 | AT1G17920.1 | 51.397 | 179 | 83 | 2 | 139 | 316 | 266 | 441 | 1.32e-54 | 190 |
MsaG036284 | AT1G17920.1 | 63.793 | 116 | 42 | 0 | 21 | 136 | 25 | 140 | 2.36e-43 | 159 |
MsaG036284 | AT4G00730.2 | 45.327 | 214 | 99 | 7 | 139 | 349 | 371 | 569 | 3.30e-50 | 176 |
MsaG036284 | AT4G00730.2 | 55.000 | 120 | 54 | 0 | 17 | 136 | 134 | 253 | 1.92e-38 | 144 |
MsaG036284 | AT4G04890.2 | 50.562 | 178 | 82 | 4 | 139 | 314 | 302 | 475 | 1.00e-49 | 177 |
MsaG036284 | AT4G04890.2 | 51.562 | 128 | 62 | 0 | 19 | 146 | 64 | 191 | 9.39e-35 | 135 |
MsaG036284 | AT4G04890.1 | 50.562 | 178 | 82 | 4 | 139 | 314 | 302 | 475 | 1.00e-49 | 177 |
MsaG036284 | AT4G04890.1 | 51.562 | 128 | 62 | 0 | 19 | 146 | 64 | 191 | 9.39e-35 | 135 |
MsaG036284 | AT4G21750.2 | 48.864 | 176 | 85 | 3 | 140 | 314 | 312 | 483 | 2.08e-48 | 174 |
MsaG036284 | AT4G21750.2 | 52.344 | 128 | 61 | 0 | 19 | 146 | 64 | 191 | 2.40e-35 | 137 |
MsaG036284 | AT4G21750.1 | 48.864 | 176 | 85 | 3 | 140 | 314 | 312 | 483 | 2.08e-48 | 174 |
MsaG036284 | AT4G21750.1 | 52.344 | 128 | 61 | 0 | 19 | 146 | 64 | 191 | 2.40e-35 | 137 |
MsaG036284 | AT4G21750.3 | 48.864 | 176 | 85 | 3 | 140 | 314 | 312 | 483 | 2.08e-48 | 174 |
MsaG036284 | AT4G21750.3 | 52.344 | 128 | 61 | 0 | 19 | 146 | 64 | 191 | 2.40e-35 | 137 |
MsaG036284 | AT4G21750.4 | 48.864 | 176 | 85 | 3 | 140 | 314 | 312 | 483 | 2.08e-48 | 174 |
MsaG036284 | AT4G21750.4 | 52.344 | 128 | 61 | 0 | 19 | 146 | 64 | 191 | 2.40e-35 | 137 |
MsaG036284 | AT4G00730.1 | 49.444 | 180 | 86 | 4 | 139 | 316 | 371 | 547 | 2.17e-48 | 174 |
MsaG036284 | AT4G00730.1 | 55.000 | 120 | 54 | 0 | 17 | 136 | 134 | 253 | 4.08e-38 | 145 |
MsaG036284 | AT1G05230.12 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 1.64e-45 | 164 |
MsaG036284 | AT1G05230.12 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 8.76e-35 | 134 |
MsaG036284 | AT1G05230.8 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.8 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.4 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.4 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.9 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.9 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.10 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.10 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.7 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.7 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.11 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.11 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.2 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.2 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.6 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.6 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.5 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.5 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.1 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.17e-45 | 165 |
MsaG036284 | AT1G05230.1 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.58e-34 | 134 |
MsaG036284 | AT1G05230.3 | 47.458 | 177 | 88 | 3 | 141 | 316 | 297 | 469 | 2.38e-45 | 165 |
MsaG036284 | AT1G05230.3 | 47.917 | 144 | 72 | 1 | 6 | 146 | 50 | 193 | 1.59e-34 | 134 |
MsaG036284 | AT3G61150.1 | 42.995 | 207 | 103 | 6 | 143 | 347 | 373 | 566 | 3.63e-45 | 165 |
MsaG036284 | AT3G61150.1 | 55.085 | 118 | 53 | 0 | 19 | 136 | 112 | 229 | 2.24e-38 | 145 |
MsaG036284 | AT3G03260.2 | 44.000 | 175 | 93 | 4 | 142 | 314 | 266 | 437 | 4.21e-42 | 154 |
MsaG036284 | AT3G03260.2 | 48.571 | 140 | 67 | 2 | 2 | 140 | 12 | 147 | 9.58e-32 | 125 |
MsaG036284 | AT3G03260.1 | 44.000 | 175 | 93 | 4 | 142 | 314 | 266 | 437 | 1.77e-41 | 154 |
MsaG036284 | AT3G03260.1 | 49.286 | 140 | 66 | 3 | 2 | 140 | 12 | 147 | 1.97e-31 | 125 |
MsaG036284 | AT5G46880.3 | 46.961 | 181 | 89 | 5 | 143 | 318 | 383 | 561 | 1.74e-40 | 152 |
MsaG036284 | AT5G46880.3 | 46.875 | 128 | 66 | 1 | 19 | 146 | 113 | 238 | 3.58e-28 | 116 |
MsaG036284 | AT5G46880.1 | 46.961 | 181 | 89 | 5 | 143 | 318 | 383 | 561 | 1.74e-40 | 152 |
MsaG036284 | AT5G46880.1 | 46.875 | 128 | 66 | 1 | 19 | 146 | 113 | 238 | 3.58e-28 | 116 |
MsaG036284 | AT5G46880.2 | 46.961 | 181 | 89 | 5 | 143 | 318 | 383 | 561 | 1.74e-40 | 152 |
MsaG036284 | AT5G46880.2 | 46.875 | 128 | 66 | 1 | 19 | 146 | 113 | 238 | 3.58e-28 | 116 |
MsaG036284 | AT1G79840.5 | 41.436 | 181 | 97 | 5 | 142 | 316 | 313 | 490 | 4.08e-40 | 148 |
MsaG036284 | AT1G79840.5 | 43.478 | 138 | 67 | 2 | 12 | 147 | 96 | 224 | 1.70e-26 | 110 |
MsaG036284 | AT1G79840.4 | 40.642 | 187 | 102 | 5 | 142 | 322 | 313 | 496 | 7.96e-40 | 149 |
MsaG036284 | AT1G79840.4 | 43.478 | 138 | 67 | 2 | 12 | 147 | 96 | 224 | 2.02e-26 | 110 |
MsaG036284 | AT1G79840.3 | 40.642 | 187 | 102 | 5 | 142 | 322 | 255 | 438 | 9.31e-40 | 149 |
MsaG036284 | AT1G79840.3 | 43.796 | 137 | 66 | 2 | 12 | 146 | 38 | 165 | 2.77e-26 | 110 |
MsaG036284 | AT1G79840.6 | 40.642 | 187 | 102 | 5 | 142 | 322 | 255 | 438 | 9.31e-40 | 149 |
MsaG036284 | AT1G79840.6 | 43.796 | 137 | 66 | 2 | 12 | 146 | 38 | 165 | 2.77e-26 | 110 |
MsaG036284 | AT1G79840.2 | 40.642 | 187 | 102 | 5 | 142 | 322 | 342 | 525 | 1.00e-39 | 149 |
MsaG036284 | AT1G79840.2 | 43.796 | 137 | 66 | 2 | 12 | 146 | 125 | 252 | 3.90e-26 | 110 |
MsaG036284 | AT1G79840.1 | 40.642 | 187 | 102 | 5 | 142 | 322 | 313 | 496 | 1.22e-39 | 149 |
MsaG036284 | AT1G79840.1 | 43.796 | 137 | 66 | 2 | 12 | 146 | 96 | 223 | 2.60e-26 | 110 |
MsaG036284 | AT1G34650.1 | 45.665 | 173 | 92 | 2 | 143 | 314 | 284 | 455 | 2.44e-37 | 142 |
MsaG036284 | AT1G34650.1 | 46.018 | 113 | 61 | 0 | 24 | 136 | 23 | 135 | 3.30e-22 | 98.6 |
MsaG036284 | AT5G17320.1 | 44.505 | 182 | 96 | 5 | 137 | 315 | 285 | 464 | 3.87e-37 | 142 |
MsaG036284 | AT5G17320.1 | 49.624 | 133 | 65 | 2 | 6 | 136 | 14 | 146 | 5.39e-28 | 115 |
MsaG036284 | AT2G32370.1 | 38.916 | 203 | 114 | 5 | 139 | 338 | 302 | 497 | 5.00e-36 | 139 |
MsaG036284 | AT2G32370.1 | 41.781 | 146 | 85 | 0 | 3 | 148 | 54 | 199 | 6.72e-29 | 118 |
MsaG036284 | AT4G25530.1 | 40.556 | 180 | 103 | 3 | 138 | 316 | 264 | 440 | 6.14e-35 | 135 |
MsaG036284 | AT4G25530.1 | 32.540 | 126 | 85 | 0 | 11 | 136 | 34 | 159 | 1.97e-15 | 78.2 |
MsaG036284 | AT4G32880.1 | 26.608 | 342 | 174 | 15 | 7 | 278 | 2 | 336 | 3.32e-15 | 77.4 |
Find 56 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGGCTTGCTTATCTTTA+TGG | 0.090984 | 7:-30962539 | MsaT036284.1:CDS |
GACTTTGGTTGAAATGTTTA+TGG | 0.116059 | 7:-30963376 | MsaT036284.1:CDS |
ATGTTTGGTTTCAGAATAAA+AGG | 0.220895 | 7:-30966082 | MsaT036284.1:CDS |
AGAAGCTTTGATACGAATAT+TGG | 0.227126 | 7:+30963431 | None:intergenic |
AATAGCCATTAGGCATGTTT+TGG | 0.297104 | 7:+30962806 | None:intergenic |
ATCAATAGTGAAGTTGCATT+TGG | 0.327865 | 7:-30962599 | MsaT036284.1:CDS |
CGAGGCCATCGTCTTCCTTC+CGG | 0.346534 | 7:-30962838 | MsaT036284.1:CDS |
TTTGCCATTGTCACAATAGT+TGG | 0.352656 | 7:+30963228 | None:intergenic |
AGGAAGTAGAATTCTCTAAT+AGG | 0.356544 | 7:+30962949 | None:intergenic |
GAAGCTTTGATACGAATATT+GGG | 0.358583 | 7:+30963432 | None:intergenic |
CTCCTAGACAGATTGATGTT+TGG | 0.363835 | 7:-30966097 | MsaT036284.1:CDS |
TCTTAGTGGTTCTTTGCAAT+TGG | 0.371610 | 7:-30963169 | MsaT036284.1:intron |
AAATCACAATCAACATTGAT+TGG | 0.400197 | 7:+30965113 | None:intergenic |
ATTACCTTGGAATAGCCATT+AGG | 0.415733 | 7:+30962796 | None:intergenic |
CGAACGAAGGATGGTCTTAG+TGG | 0.418990 | 7:-30963183 | MsaT036284.1:CDS |
AACATAGGTTGCAGTTAAGC+AGG | 0.427466 | 7:-30966133 | MsaT036284.1:CDS |
TTTCTATAGAGCATATGAAC+TGG | 0.444548 | 7:+30962626 | None:intergenic |
CTTCTAATACAGATTATATG+AGG | 0.451700 | 7:-30966319 | MsaT036284.1:CDS |
TTCATCCAAAACATGCCTAA+TGG | 0.474959 | 7:-30962811 | MsaT036284.1:CDS |
TACTGTAAACAATTTGAGAA+AGG | 0.478598 | 7:-30962922 | MsaT036284.1:CDS |
GAATAAAAGGGCTCAGATGA+AGG | 0.502319 | 7:-30966069 | MsaT036284.1:intron |
GTAAACAATTTGAGAAAGGA+TGG | 0.505133 | 7:-30962918 | MsaT036284.1:CDS |
CTACAAGATGACAGGTAGAA+TGG | 0.507649 | 7:+30962506 | None:intergenic |
TATCATGAATGCCTCGACTT+TGG | 0.512377 | 7:-30963391 | MsaT036284.1:CDS |
ATCTGAGAATATAGCTATGA+GGG | 0.523034 | 7:-30965177 | MsaT036284.1:CDS |
ACACTCCTCGTCAGATTCAA+AGG | 0.528470 | 7:-30966277 | MsaT036284.1:CDS |
AAGCAGACACGAGAAGAAAG+AGG | 0.531686 | 7:-30965239 | MsaT036284.1:intron |
GATCTGAGAATATAGCTATG+AGG | 0.531988 | 7:-30965178 | MsaT036284.1:CDS |
CACATCCTTGTGAACAACAT+AGG | 0.537997 | 7:-30966148 | MsaT036284.1:CDS |
AGTTATATCTTCTCGAACGA+AGG | 0.555948 | 7:-30963196 | MsaT036284.1:CDS |
TTCTATAGAGCATATGAACT+GGG | 0.555956 | 7:+30962627 | None:intergenic |
ATTTCCAACTATTGTGACAA+TGG | 0.556197 | 7:-30963232 | MsaT036284.1:CDS |
ATATCTTCTCGAACGAAGGA+TGG | 0.565148 | 7:-30963192 | MsaT036284.1:CDS |
CATGCCTAATGGCTATTCCA+AGG | 0.568508 | 7:-30962800 | MsaT036284.1:intron |
CAATTCAAAGAATGTGTGAA+AGG | 0.576894 | 7:-30962556 | MsaT036284.1:CDS |
AACCAAACATCAATCTGTCT+AGG | 0.586256 | 7:+30966095 | None:intergenic |
TCACAATCAACATTGATTGG+AGG | 0.587576 | 7:+30965116 | None:intergenic |
TGTTTGGTTTCAGAATAAAA+GGG | 0.598282 | 7:-30966081 | MsaT036284.1:CDS |
TACTTGGATTGAACATGTTG+AGG | 0.602638 | 7:-30962663 | MsaT036284.1:CDS |
ATCAATCTGTCTAGGAGACA+AGG | 0.602937 | 7:+30966103 | None:intergenic |
CAAATTGTTTACAGTAACGT+AGG | 0.603339 | 7:+30962929 | None:intergenic |
TAAACAATTTGAGAAAGGAT+GGG | 0.603561 | 7:-30962917 | MsaT036284.1:CDS |
AAATGCTCAACTCAAAGAAG+AGG | 0.603990 | 7:-30965066 | MsaT036284.1:intron |
TGCAACCTATGTTGTTCACA+AGG | 0.621373 | 7:+30966143 | None:intergenic |
CTTATGGAGCATCACAGTGA+AGG | 0.621938 | 7:-30966350 | MsaT036284.1:CDS |
GTCTTGATCTAGAACAAGTG+TGG | 0.623996 | 7:-30961771 | MsaT036284.1:intron |
TCACACGACTACAAGATGAC+AGG | 0.627587 | 7:+30962498 | None:intergenic |
AATTCTCTAATAGGATCAAG+TGG | 0.629742 | 7:+30962958 | None:intergenic |
ACATAGGTTGCAGTTAAGCA+GGG | 0.638853 | 7:-30966132 | MsaT036284.1:CDS |
AAACATTTCAACCAAAGTCG+AGG | 0.640163 | 7:+30963380 | None:intergenic |
TCAAGCCTTTGAATCTGACG+AGG | 0.643299 | 7:+30966272 | None:intergenic |
AATGTTATCTGCAGCACTTG+TGG | 0.647495 | 7:-30965143 | MsaT036284.1:CDS |
GAATCTGACGAGGAGTGTGA+CGG | 0.662551 | 7:+30966282 | None:intergenic |
GTTATCTGCAGCACTTGTGG+TGG | 0.684640 | 7:-30965140 | MsaT036284.1:CDS |
GGAATGAATGATACGTGCGA+AGG | 0.696371 | 7:+30962470 | None:intergenic |
AGCAACCGGAAGGAAGACGA+TGG | 0.719881 | 7:+30962833 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 30961728 | 30966369 | 30961728 | ID=MsaG036284 |
Chr7 | mRNA | 30961728 | 30966369 | 30961728 | ID=MsaT036284.1;Parent=MsaG036284 |
Chr7 | exon | 30961728 | 30961781 | 30961728 | ID=MsaT036284.1.exon8;Parent=MsaT036284.1 |
Chr7 | CDS | 30961728 | 30961781 | 30961728 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30962484 | 30962687 | 30962484 | ID=MsaT036284.1.exon7;Parent=MsaT036284.1 |
Chr7 | CDS | 30962484 | 30962687 | 30962484 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30962801 | 30963007 | 30962801 | ID=MsaT036284.1.exon6;Parent=MsaT036284.1 |
Chr7 | CDS | 30962801 | 30963007 | 30962801 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30963170 | 30963271 | 30963170 | ID=MsaT036284.1.exon5;Parent=MsaT036284.1 |
Chr7 | CDS | 30963170 | 30963271 | 30963170 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30963371 | 30963457 | 30963371 | ID=MsaT036284.1.exon4;Parent=MsaT036284.1 |
Chr7 | CDS | 30963371 | 30963457 | 30963371 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30965067 | 30965255 | 30965067 | ID=MsaT036284.1.exon3;Parent=MsaT036284.1 |
Chr7 | CDS | 30965067 | 30965255 | 30965067 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30966070 | 30966187 | 30966070 | ID=MsaT036284.1.exon2;Parent=MsaT036284.1 |
Chr7 | CDS | 30966070 | 30966187 | 30966070 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Chr7 | exon | 30966269 | 30966369 | 30966269 | ID=MsaT036284.1.exon1;Parent=MsaT036284.1 |
Chr7 | CDS | 30966269 | 30966369 | 30966269 | ID=cds.MsaT036284.1;Parent=MsaT036284.1 |
Gene Sequence |
Protein sequence |