AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036284


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036284 MtrunA17_Chr7g0224451 82.500 200 26 3 130 322 206 403 9.92e-112 332
MsaG036284 MtrunA17_Chr7g0224451 65.441 136 35 2 1 136 1 124 3.91e-49 171
MsaG036284 MtrunA17_Chr6g0481041 75.000 180 44 1 136 314 277 456 1.04e-92 292
MsaG036284 MtrunA17_Chr6g0481041 64.865 148 40 1 1 136 1 148 1.29e-53 187
MsaG036284 MtrunA17_Chr7g0224481 83.088 136 15 2 130 259 206 339 1.87e-72 228
MsaG036284 MtrunA17_Chr7g0224481 65.441 136 35 2 1 136 1 124 4.25e-50 171
MsaG036284 MtrunA17_Chr5g0394111 31.933 357 176 7 24 315 40 394 2.42e-53 186
MsaG036284 MtrunA17_Chr5g0410711 47.783 203 99 7 120 318 320 519 1.51e-51 182
MsaG036284 MtrunA17_Chr5g0410711 47.368 133 69 1 5 136 77 209 9.08e-35 135
MsaG036284 MtrunA17_Chr8g0350321 50.000 182 88 3 143 322 374 554 1.01e-50 181
MsaG036284 MtrunA17_Chr8g0350321 55.000 120 54 0 17 136 115 234 9.65e-38 144
MsaG036284 MtrunA17_Chr2g0322731 52.000 175 79 3 141 314 342 512 1.16e-50 180
MsaG036284 MtrunA17_Chr2g0322731 50.781 128 63 0 19 146 102 229 3.38e-35 136
MsaG036284 MtrunA17_Chr4g0024351 51.397 179 81 4 138 314 297 471 2.53e-50 179
MsaG036284 MtrunA17_Chr4g0024351 44.654 159 86 1 2 158 43 201 2.74e-36 139
MsaG036284 MtrunA17_Chr7g0246631 49.727 183 88 4 143 322 346 527 5.76e-50 178
MsaG036284 MtrunA17_Chr7g0246631 55.833 120 53 0 17 136 91 210 1.80e-38 145
MsaG036284 MtrunA17_Chr2g0292761 46.512 172 89 2 142 312 135 304 7.18e-46 164
MsaG036284 MtrunA17_Chr1g0203671 44.886 176 94 3 143 316 357 531 1.73e-44 163
MsaG036284 MtrunA17_Chr1g0203671 54.167 120 55 0 17 136 95 214 3.21e-35 136
MsaG036284 MtrunA17_Chr7g0224431 58.571 140 15 3 130 269 24 120 6.15e-42 142
MsaG036284 MtrunA17_Chr2g0331581 38.220 191 116 2 138 327 359 548 6.93e-42 155
MsaG036284 MtrunA17_Chr2g0331581 47.154 123 63 1 21 141 143 265 3.91e-28 115
MsaG036284 MtrunA17_Chr2g0292731 44.571 175 95 2 139 312 117 290 6.03e-41 150
MsaG036284 MtrunA17_Chr2g0292741 44.444 171 93 2 143 312 113 282 7.80e-40 147
MsaG036284 MtrunA17_Chr5g0419821 60.177 113 45 0 24 136 41 153 2.42e-38 135
MsaG036284 MtrunA17_Chr6g0472471 39.655 174 102 3 143 314 332 504 1.66e-36 140
MsaG036284 MtrunA17_Chr6g0472471 49.138 116 59 0 21 136 73 188 4.87e-32 127
MsaG036284 MtrunA17_Chr2g0319671 36.782 174 101 4 139 311 103 268 2.05e-28 112
MsaG036284 MtrunA17_Chr7g0224491 80.645 62 11 1 262 322 1 62 3.04e-26 106
MsaG036284 MtrunA17_Chr2g0319691 45.714 105 52 4 208 311 9 109 6.37e-20 85.5
MsaG036284 MtrunA17_Chr2g0304191 40.476 84 50 0 143 226 50 133 3.42e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036284 AT5G52170.2 35.040 371 165 6 21 316 61 430 7.00e-64 215
MsaG036284 AT5G52170.3 34.771 371 166 6 21 316 61 430 2.22e-63 214
MsaG036284 AT5G52170.1 34.771 371 166 6 21 316 61 430 2.22e-63 214
MsaG036284 AT4G17710.1 35.340 382 163 9 19 318 90 469 2.75e-60 206
MsaG036284 AT1G73360.1 52.174 184 84 2 134 316 281 461 2.65e-59 203
MsaG036284 AT1G73360.1 58.503 147 61 0 19 165 34 180 5.99e-47 169
MsaG036284 AT1G17920.2 51.397 179 83 2 139 316 266 441 1.32e-54 190
MsaG036284 AT1G17920.2 63.793 116 42 0 21 136 25 140 2.36e-43 159
MsaG036284 AT1G17920.1 51.397 179 83 2 139 316 266 441 1.32e-54 190
MsaG036284 AT1G17920.1 63.793 116 42 0 21 136 25 140 2.36e-43 159
MsaG036284 AT4G00730.2 45.327 214 99 7 139 349 371 569 3.30e-50 176
MsaG036284 AT4G00730.2 55.000 120 54 0 17 136 134 253 1.92e-38 144
MsaG036284 AT4G04890.2 50.562 178 82 4 139 314 302 475 1.00e-49 177
MsaG036284 AT4G04890.2 51.562 128 62 0 19 146 64 191 9.39e-35 135
MsaG036284 AT4G04890.1 50.562 178 82 4 139 314 302 475 1.00e-49 177
MsaG036284 AT4G04890.1 51.562 128 62 0 19 146 64 191 9.39e-35 135
MsaG036284 AT4G21750.2 48.864 176 85 3 140 314 312 483 2.08e-48 174
MsaG036284 AT4G21750.2 52.344 128 61 0 19 146 64 191 2.40e-35 137
MsaG036284 AT4G21750.1 48.864 176 85 3 140 314 312 483 2.08e-48 174
MsaG036284 AT4G21750.1 52.344 128 61 0 19 146 64 191 2.40e-35 137
MsaG036284 AT4G21750.3 48.864 176 85 3 140 314 312 483 2.08e-48 174
MsaG036284 AT4G21750.3 52.344 128 61 0 19 146 64 191 2.40e-35 137
MsaG036284 AT4G21750.4 48.864 176 85 3 140 314 312 483 2.08e-48 174
MsaG036284 AT4G21750.4 52.344 128 61 0 19 146 64 191 2.40e-35 137
MsaG036284 AT4G00730.1 49.444 180 86 4 139 316 371 547 2.17e-48 174
MsaG036284 AT4G00730.1 55.000 120 54 0 17 136 134 253 4.08e-38 145
MsaG036284 AT1G05230.12 47.458 177 88 3 141 316 297 469 1.64e-45 164
MsaG036284 AT1G05230.12 47.917 144 72 1 6 146 50 193 8.76e-35 134
MsaG036284 AT1G05230.8 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.8 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.4 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.4 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.9 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.9 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.10 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.10 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.7 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.7 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.11 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.11 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.2 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.2 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.6 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.6 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.5 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.5 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.1 47.458 177 88 3 141 316 297 469 2.17e-45 165
MsaG036284 AT1G05230.1 47.917 144 72 1 6 146 50 193 1.58e-34 134
MsaG036284 AT1G05230.3 47.458 177 88 3 141 316 297 469 2.38e-45 165
MsaG036284 AT1G05230.3 47.917 144 72 1 6 146 50 193 1.59e-34 134
MsaG036284 AT3G61150.1 42.995 207 103 6 143 347 373 566 3.63e-45 165
MsaG036284 AT3G61150.1 55.085 118 53 0 19 136 112 229 2.24e-38 145
MsaG036284 AT3G03260.2 44.000 175 93 4 142 314 266 437 4.21e-42 154
MsaG036284 AT3G03260.2 48.571 140 67 2 2 140 12 147 9.58e-32 125
MsaG036284 AT3G03260.1 44.000 175 93 4 142 314 266 437 1.77e-41 154
MsaG036284 AT3G03260.1 49.286 140 66 3 2 140 12 147 1.97e-31 125
MsaG036284 AT5G46880.3 46.961 181 89 5 143 318 383 561 1.74e-40 152
MsaG036284 AT5G46880.3 46.875 128 66 1 19 146 113 238 3.58e-28 116
MsaG036284 AT5G46880.1 46.961 181 89 5 143 318 383 561 1.74e-40 152
MsaG036284 AT5G46880.1 46.875 128 66 1 19 146 113 238 3.58e-28 116
MsaG036284 AT5G46880.2 46.961 181 89 5 143 318 383 561 1.74e-40 152
MsaG036284 AT5G46880.2 46.875 128 66 1 19 146 113 238 3.58e-28 116
MsaG036284 AT1G79840.5 41.436 181 97 5 142 316 313 490 4.08e-40 148
MsaG036284 AT1G79840.5 43.478 138 67 2 12 147 96 224 1.70e-26 110
MsaG036284 AT1G79840.4 40.642 187 102 5 142 322 313 496 7.96e-40 149
MsaG036284 AT1G79840.4 43.478 138 67 2 12 147 96 224 2.02e-26 110
MsaG036284 AT1G79840.3 40.642 187 102 5 142 322 255 438 9.31e-40 149
MsaG036284 AT1G79840.3 43.796 137 66 2 12 146 38 165 2.77e-26 110
MsaG036284 AT1G79840.6 40.642 187 102 5 142 322 255 438 9.31e-40 149
MsaG036284 AT1G79840.6 43.796 137 66 2 12 146 38 165 2.77e-26 110
MsaG036284 AT1G79840.2 40.642 187 102 5 142 322 342 525 1.00e-39 149
MsaG036284 AT1G79840.2 43.796 137 66 2 12 146 125 252 3.90e-26 110
MsaG036284 AT1G79840.1 40.642 187 102 5 142 322 313 496 1.22e-39 149
MsaG036284 AT1G79840.1 43.796 137 66 2 12 146 96 223 2.60e-26 110
MsaG036284 AT1G34650.1 45.665 173 92 2 143 314 284 455 2.44e-37 142
MsaG036284 AT1G34650.1 46.018 113 61 0 24 136 23 135 3.30e-22 98.6
MsaG036284 AT5G17320.1 44.505 182 96 5 137 315 285 464 3.87e-37 142
MsaG036284 AT5G17320.1 49.624 133 65 2 6 136 14 146 5.39e-28 115
MsaG036284 AT2G32370.1 38.916 203 114 5 139 338 302 497 5.00e-36 139
MsaG036284 AT2G32370.1 41.781 146 85 0 3 148 54 199 6.72e-29 118
MsaG036284 AT4G25530.1 40.556 180 103 3 138 316 264 440 6.14e-35 135
MsaG036284 AT4G25530.1 32.540 126 85 0 11 136 34 159 1.97e-15 78.2
MsaG036284 AT4G32880.1 26.608 342 174 15 7 278 2 336 3.32e-15 77.4

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGCTTGCTTATCTTTA+TGG 0.090984 7:-30962539 MsaT036284.1:CDS
GACTTTGGTTGAAATGTTTA+TGG 0.116059 7:-30963376 MsaT036284.1:CDS
ATGTTTGGTTTCAGAATAAA+AGG 0.220895 7:-30966082 MsaT036284.1:CDS
AGAAGCTTTGATACGAATAT+TGG 0.227126 7:+30963431 None:intergenic
AATAGCCATTAGGCATGTTT+TGG 0.297104 7:+30962806 None:intergenic
ATCAATAGTGAAGTTGCATT+TGG 0.327865 7:-30962599 MsaT036284.1:CDS
CGAGGCCATCGTCTTCCTTC+CGG 0.346534 7:-30962838 MsaT036284.1:CDS
TTTGCCATTGTCACAATAGT+TGG 0.352656 7:+30963228 None:intergenic
AGGAAGTAGAATTCTCTAAT+AGG 0.356544 7:+30962949 None:intergenic
GAAGCTTTGATACGAATATT+GGG 0.358583 7:+30963432 None:intergenic
CTCCTAGACAGATTGATGTT+TGG 0.363835 7:-30966097 MsaT036284.1:CDS
TCTTAGTGGTTCTTTGCAAT+TGG 0.371610 7:-30963169 MsaT036284.1:intron
AAATCACAATCAACATTGAT+TGG 0.400197 7:+30965113 None:intergenic
ATTACCTTGGAATAGCCATT+AGG 0.415733 7:+30962796 None:intergenic
CGAACGAAGGATGGTCTTAG+TGG 0.418990 7:-30963183 MsaT036284.1:CDS
AACATAGGTTGCAGTTAAGC+AGG 0.427466 7:-30966133 MsaT036284.1:CDS
TTTCTATAGAGCATATGAAC+TGG 0.444548 7:+30962626 None:intergenic
CTTCTAATACAGATTATATG+AGG 0.451700 7:-30966319 MsaT036284.1:CDS
TTCATCCAAAACATGCCTAA+TGG 0.474959 7:-30962811 MsaT036284.1:CDS
TACTGTAAACAATTTGAGAA+AGG 0.478598 7:-30962922 MsaT036284.1:CDS
GAATAAAAGGGCTCAGATGA+AGG 0.502319 7:-30966069 MsaT036284.1:intron
GTAAACAATTTGAGAAAGGA+TGG 0.505133 7:-30962918 MsaT036284.1:CDS
CTACAAGATGACAGGTAGAA+TGG 0.507649 7:+30962506 None:intergenic
TATCATGAATGCCTCGACTT+TGG 0.512377 7:-30963391 MsaT036284.1:CDS
ATCTGAGAATATAGCTATGA+GGG 0.523034 7:-30965177 MsaT036284.1:CDS
ACACTCCTCGTCAGATTCAA+AGG 0.528470 7:-30966277 MsaT036284.1:CDS
AAGCAGACACGAGAAGAAAG+AGG 0.531686 7:-30965239 MsaT036284.1:intron
GATCTGAGAATATAGCTATG+AGG 0.531988 7:-30965178 MsaT036284.1:CDS
CACATCCTTGTGAACAACAT+AGG 0.537997 7:-30966148 MsaT036284.1:CDS
AGTTATATCTTCTCGAACGA+AGG 0.555948 7:-30963196 MsaT036284.1:CDS
TTCTATAGAGCATATGAACT+GGG 0.555956 7:+30962627 None:intergenic
ATTTCCAACTATTGTGACAA+TGG 0.556197 7:-30963232 MsaT036284.1:CDS
ATATCTTCTCGAACGAAGGA+TGG 0.565148 7:-30963192 MsaT036284.1:CDS
CATGCCTAATGGCTATTCCA+AGG 0.568508 7:-30962800 MsaT036284.1:intron
CAATTCAAAGAATGTGTGAA+AGG 0.576894 7:-30962556 MsaT036284.1:CDS
AACCAAACATCAATCTGTCT+AGG 0.586256 7:+30966095 None:intergenic
TCACAATCAACATTGATTGG+AGG 0.587576 7:+30965116 None:intergenic
TGTTTGGTTTCAGAATAAAA+GGG 0.598282 7:-30966081 MsaT036284.1:CDS
TACTTGGATTGAACATGTTG+AGG 0.602638 7:-30962663 MsaT036284.1:CDS
ATCAATCTGTCTAGGAGACA+AGG 0.602937 7:+30966103 None:intergenic
CAAATTGTTTACAGTAACGT+AGG 0.603339 7:+30962929 None:intergenic
TAAACAATTTGAGAAAGGAT+GGG 0.603561 7:-30962917 MsaT036284.1:CDS
AAATGCTCAACTCAAAGAAG+AGG 0.603990 7:-30965066 MsaT036284.1:intron
TGCAACCTATGTTGTTCACA+AGG 0.621373 7:+30966143 None:intergenic
CTTATGGAGCATCACAGTGA+AGG 0.621938 7:-30966350 MsaT036284.1:CDS
GTCTTGATCTAGAACAAGTG+TGG 0.623996 7:-30961771 MsaT036284.1:intron
TCACACGACTACAAGATGAC+AGG 0.627587 7:+30962498 None:intergenic
AATTCTCTAATAGGATCAAG+TGG 0.629742 7:+30962958 None:intergenic
ACATAGGTTGCAGTTAAGCA+GGG 0.638853 7:-30966132 MsaT036284.1:CDS
AAACATTTCAACCAAAGTCG+AGG 0.640163 7:+30963380 None:intergenic
TCAAGCCTTTGAATCTGACG+AGG 0.643299 7:+30966272 None:intergenic
AATGTTATCTGCAGCACTTG+TGG 0.647495 7:-30965143 MsaT036284.1:CDS
GAATCTGACGAGGAGTGTGA+CGG 0.662551 7:+30966282 None:intergenic
GTTATCTGCAGCACTTGTGG+TGG 0.684640 7:-30965140 MsaT036284.1:CDS
GGAATGAATGATACGTGCGA+AGG 0.696371 7:+30962470 None:intergenic
AGCAACCGGAAGGAAGACGA+TGG 0.719881 7:+30962833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 30961728 30966369 30961728 ID=MsaG036284
Chr7 mRNA 30961728 30966369 30961728 ID=MsaT036284.1;Parent=MsaG036284
Chr7 exon 30961728 30961781 30961728 ID=MsaT036284.1.exon8;Parent=MsaT036284.1
Chr7 CDS 30961728 30961781 30961728 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30962484 30962687 30962484 ID=MsaT036284.1.exon7;Parent=MsaT036284.1
Chr7 CDS 30962484 30962687 30962484 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30962801 30963007 30962801 ID=MsaT036284.1.exon6;Parent=MsaT036284.1
Chr7 CDS 30962801 30963007 30962801 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30963170 30963271 30963170 ID=MsaT036284.1.exon5;Parent=MsaT036284.1
Chr7 CDS 30963170 30963271 30963170 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30963371 30963457 30963371 ID=MsaT036284.1.exon4;Parent=MsaT036284.1
Chr7 CDS 30963371 30963457 30963371 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30965067 30965255 30965067 ID=MsaT036284.1.exon3;Parent=MsaT036284.1
Chr7 CDS 30965067 30965255 30965067 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30966070 30966187 30966070 ID=MsaT036284.1.exon2;Parent=MsaT036284.1
Chr7 CDS 30966070 30966187 30966070 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Chr7 exon 30966269 30966369 30966269 ID=MsaT036284.1.exon1;Parent=MsaT036284.1
Chr7 CDS 30966269 30966369 30966269 ID=cds.MsaT036284.1;Parent=MsaT036284.1
Gene Sequence

>MsaT036284.1

ATGGAGCATCACAGTGAAGGAAGTGTTTCTTCTAATACAGATTATATGAGGATCAAATGTTACAACCGTCACACTCCTCGTCAGATTCAAAGGCTTGAAGCGCTGTTTAAAGATTGTTCACATCCTTGTGAACAACATAGGTTGCAGTTAAGCAGGGAATTAGCCTTGTCTCCTAGACAGATTGATGTTTGGTTTCAGAATAAAAGGGCTCAGATGAAGACACGAGAAGAAAGAGGTGATAACTCTAAACTCATAGAAGAGAATGATAAAATAAGATCTGAGAATATAGCTATGAGGGAAGCCCTTAAAAATGTTATCTGCAGCACTTGTGGTGGTCCTCCAATCAATGTTGATTGTGATTTTGATGAACAAAAGTTGATCATTGAAAATGCTCAACTCAAAGAAGAGAATCCCAATATTCGTATCAAAGCTTCTAGAAATTCTGTTGATGTTATCATGAATGCCTCGACTTTGGTTGAAATGTTTATGGATCCTAACAAGTGGATGGGGCTATTTCCAACTATTGTGACAATGGCAAAGACTATTGAAGTTATATCTTCTCGAACGAAGGATGGTCTTAGTGGTTCTTTGCAATTGATGTATGAAGGGTTGCAAGTACTTACACCACTTGATCCTATTAGAGAATTCTACTTCCTACGTTACTGTAAACAATTTGAGAAAGGATGGGCAATAGTTGATGTTTCATATGAATTTCGTCATAACAAACATTTTGCTACGAAATTTCGAGGCCATCGTCTTCCTTCCGGTTGCTTCATCCAAAACATGCCTAATGGCTATTCCAAGGTTACTTGGATTGAACATGTTGAGGTTGAAGACAGAAACCCAGTTCATATGCTCTATAGAAATGTTATCAATAGTGAAGTTGCATTTGGAGCTGAAAAATGGCTCACTACAATTCAAAGAATGTGTGAAAGGCTTGCTTATCTTTATGGATTCATCAAGCCATTCTACCTGTCATCTTGTAGTCGTGTGACTATTCCTTCGCACAACAAGTGTGGTTATCAGACAAAAATAACTAAGTGTATTGGAATTTTTCTGTGA

Protein sequence

>MsaT036284.1

MEHHSEGSVSSNTDYMRIKCYNRHTPRQIQRLEALFKDCSHPCEQHRLQLSRELALSPRQIDVWFQNKRAQMKTREERGDNSKLIEENDKIRSENIAMREALKNVICSTCGGPPINVDCDFDEQKLIIENAQLKEENPNIRIKASRNSVDVIMNASTLVEMFMDPNKWMGLFPTIVTMAKTIEVISSRTKDGLSGSLQLMYEGLQVLTPLDPIREFYFLRYCKQFEKGWAIVDVSYEFRHNKHFATKFRGHRLPSGCFIQNMPNGYSKVTWIEHVEVEDRNPVHMLYRNVINSEVAFGAEKWLTTIQRMCERLAYLYGFIKPFYLSSCSRVTIPSHNKCGYQTKITKCIGIFL*