AlfalfaGEDB | MsaG036287

M. sativa ssp. caerulea / MsaG036287

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036287	XP_039683759.1	82.953	657	56	6	15	625	1	647	0.0	1092

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036287	sp\|Q9FX31\|HDG11_ARATH	49.713	698	236	16	30	624	31	716	0.0	608

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036287	tr\|A0A072TYN2\|A0A072TYN2_MEDTR	82.774	656	54	6	15	625	1	642	0.0	1083

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036287	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG036287	0.805251	2.469702e-49	3.766084e-47
MsaG000083	MsaG036287	0.853614	4.094323e-61	2.517274e-58
MsaG000113	MsaG036287	0.823522	2.339727e-53	5.653440e-51
MsaG000188	MsaG036287	0.800190	2.705390e-48	3.673481e-46
MsaG000235	MsaG036287	0.825158	9.685631e-54	2.447055e-51
MsaG000250	MsaG036287	0.801277	1.627245e-48	2.264443e-46
MsaG000292	MsaG036287	0.811944	9.328601e-51	1.670727e-48
MsaG000321	MsaG036287	0.827482	2.725514e-54	7.345583e-52
MsaG000534	MsaG036287	0.807544	8.155160e-50	1.312673e-47
MsaG000643	MsaG036287	0.817853	4.631903e-52	9.631060e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036287	MtrunA17_Chr7g0224451	86.147	462	39	5	15	469	1	444	0.0	812
MsaG036287	MtrunA17_Chr6g0481041	60.274	730	180	11	1	624	1	726	0.0	804
MsaG036287	MtrunA17_Chr7g0224481	86.246	349	32	3	15	357	1	339	0.0	619
MsaG036287	MtrunA17_Chr8g0350321	42.335	711	287	17	25	623	109	808	3.23e-171	508
MsaG036287	MtrunA17_Chr7g0246631	41.691	698	290	16	31	623	91	776	1.46e-167	497
MsaG036287	MtrunA17_Chr2g0322731	41.921	687	288	13	29	622	98	766	2.80e-163	486
MsaG036287	MtrunA17_Chr4g0024351	40.621	709	308	16	11	622	38	730	9.82e-162	481
MsaG036287	MtrunA17_Chr5g0410711	39.943	706	315	16	20	621	78	778	2.32e-157	472
MsaG036287	MtrunA17_Chr7g0224491	77.705	305	21	3	360	625	1	297	1.60e-156	451
MsaG036287	MtrunA17_Chr1g0203671	39.518	706	305	18	29	621	93	789	5.55e-154	462

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036287	AT1G73360.1	49.713	698	236	16	30	624	31	716	0.0	608
MsaG036287	AT1G17920.2	50.145	688	219	19	34	624	24	684	0.0	585
MsaG036287	AT1G17920.1	50.145	688	219	19	34	624	24	684	0.0	585
MsaG036287	AT4G04890.2	42.713	693	280	17	31	623	62	737	9.85e-173	509
MsaG036287	AT4G04890.1	42.713	693	280	17	31	623	62	737	9.85e-173	509
MsaG036287	AT4G21750.2	41.501	706	292	15	31	623	62	759	1.25e-164	489
MsaG036287	AT4G21750.1	41.501	706	292	15	31	623	62	759	1.25e-164	489
MsaG036287	AT4G21750.3	41.501	706	292	15	31	623	62	759	1.25e-164	489
MsaG036287	AT4G21750.4	41.501	706	292	15	31	623	62	759	1.25e-164	489
MsaG036287	AT1G05230.3	40.634	694	295	16	20	623	50	716	2.98e-160	477

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Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCAACCAAAGTCA+AGG	0.591466	7:-31001208	None:intergenic
AAATGCTCGACTCAAAGAAG+AGG	0.627561	7:+31000257	MsaT036287.1:CDS
AACAATGATCCTCCAATGTT+TGG	0.280132	7:-31003843	None:intergenic
AACACGGAAATGCAGTTACC+TGG	0.445852	7:-31003002	None:intergenic
AACAGTTGCATTTCAAATTA+TGG	0.161793	7:+31003866	MsaT036287.1:CDS
AACCAAAATTTGATCTTAGT+AGG	0.469554	7:-30999959	None:intergenic
AATGATAATAATATTCAAGG+AGG	0.684472	7:+31003780	MsaT036287.1:CDS
AATGTTCCTTACCAACCTGC+TGG	0.579986	7:+31000952	MsaT036287.1:CDS
AATTCTCTAATAGGAACAAG+TGG	0.613864	7:-31001632	None:intergenic
ACAAAGGTTGCAGTTAGGCA+AGG	0.593066	7:+30999922	MsaT036287.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	30999260	31003989	30999260	ID=MsaG036287
Chr7	mRNA	30999260	31003989	30999260	ID=MsaT036287.1;Parent=MsaG036287
Chr7	exon	30999260	30999402	30999260	ID=MsaT036287.1.exon1;Parent=MsaT036287.1
Chr7	CDS	30999260	30999402	30999260	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	30999889	31000006	30999889	ID=MsaT036287.1.exon2;Parent=MsaT036287.1
Chr7	CDS	30999889	31000006	30999889	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31000123	31000278	31000123	ID=MsaT036287.1.exon3;Parent=MsaT036287.1
Chr7	CDS	31000123	31000278	31000123	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31000868	31001239	31000868	ID=MsaT036287.1.exon4;Parent=MsaT036287.1
Chr7	CDS	31000868	31001239	31000868	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31001340	31001441	31001340	ID=MsaT036287.1.exon5;Parent=MsaT036287.1
Chr7	CDS	31001340	31001441	31001340	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31001605	31001811	31001605	ID=MsaT036287.1.exon6;Parent=MsaT036287.1
Chr7	CDS	31001605	31001811	31001605	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31001925	31002102	31001925	ID=MsaT036287.1.exon7;Parent=MsaT036287.1
Chr7	CDS	31001925	31002102	31001925	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31002306	31002436	31002306	ID=MsaT036287.1.exon8;Parent=MsaT036287.1
Chr7	CDS	31002306	31002436	31002306	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31002939	31003028	31002939	ID=MsaT036287.1.exon9;Parent=MsaT036287.1
Chr7	CDS	31002939	31003028	31002939	ID=cds.MsaT036287.1;Parent=MsaT036287.1
Chr7	exon	31003609	31003989	31003609	ID=MsaT036287.1.exon10;Parent=MsaT036287.1
Chr7	CDS	31003609	31003989	31003609	ID=cds.MsaT036287.1;Parent=MsaT036287.1

Gene Sequence

>MsaT036287.1

ATGGAGCATCACAGTGAAGGAAGTGTTTCTTCTAAGAGACTTATGGAGCATCACAGTGAAGGAAGTGTTTCTTCTGATACTCATAAGAGGAAGAAACGTCGTTGCAACCGTCACACTGCTGATCAGATCCAAAGGCTTGAAGCGGTGTTTAAGACATGTTCATATCCTGATGAAAAACAAAGGTTGCAGTTAGGCAAGGAATTAGCCATGGATCCTACTAAGATCAAATTTTGGTTTCAGAATAGAAGGACTCAGATGAAGACACAACAAGAAAGAGATGATAACCGTACACTCGTAGAAGAGAATGATAAAATAAGATCTGAGAATATAGCTATGAGGCAAGCCCTTAAAAATGTTATTTGCAGCACTTGTGATGAACAAAAGTTGAGAATTGAAAATGCTCGACTCAAAGAAGAGCTTGTTAGAGTATCTAGCATTGCAGCTGGATACACTGGAAAATCACTGTCACACCTTCTACCAGGAAGTTCATCAACATCACCAAATGTTCCTTACCAACCTGCTGGTCTCTCTAATAAGGAAAAATCACTCATGTTAGGCATTGCTGAAAATGCAATGCAAGAGCTGATTTTGCTTATGGAAACTAATGAGCCTTTATGGATAAAATCAAACACTGATGGAAGAGATACTCTTAACCTTGAAACCTATGAAACAATGTTCCCTAGGGTTAATAATCAGTTAAAGAATCCCAATATTCGCATCGAAGCTTCTAGAAATTCTGGTGATGTTGTCATGAATGCCTTGACTTTGGTTGAAATGTTTATGGATCCTAACAAGTGGATGGAGCTATTTCCAACTATTGTGACAATGGCAAAGACTATTGAAGTTATATCTTCTCAAACGAAGGATGGTCTAAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCACCACTTGTTCCTATTAGAGAATTTTACTTCCTACGTTACTGTAAACAATTTGAGAAAGGATGGGCAATAGTTGATGTTTCGTATGAATTTCCTCATAACAAACATTTTGCTTCGAAATTTCGAGGCCTTCGTCTTCCTTCCGGTTGCTTCATCCAAAACATGCCTAATGGCAAATCCAAGGTTACTTGGATTGAACATGTTGAGGTTGAAGACAGAAACCCAGTTCATATGCTTTATAAAAATGTTATCAATAGTGGAGTTGCATTTGGAGCTGAAAAATGGCTCACTACACTTCAAAGAATGTGTGAAAGGCTTGCTTATCTTATGGATTCAGGCCATTCCGGTCATATCGAAGGAGTGATTTCATCACCTGATGGAAAGAGGACCATGATGAAGCTAACACAAAGGATGGTAACTAATTTCTGTGAAAGTATAAATGCATCAGCTAGTCATAGATGGACCACATTATCAACTTTGAATGAGATTATTTCGAATGTACTTTCCAATGGTAATGATGTTCAAGAGGTTGTTCATATAGCAAATGTTTCGTGCCCAGGTAACTGCATTTCCGTGTTTAAGGGTTTCAACACAAGTAACAACAACATGTTGATACTACAAGAAAGTTGTGTGGACTCATCAGGTTCACTTGTGGTGTCTTGTCCTGTTGATTCATCAATAATGAGCGAGGTAGATCCTTCATACATTCAATTACTACCATCAGGTTTCGCAATTACTTCTGATGGAAAGCAAAATGATAATAATATTCAAGGAGGTAAGAGTGATAATGGTGATGTTGCATCAACAAGCTCAAACCCAAACATTGGAGGATCATTGTTAACAGTTGCATTTCAAATTATGGTGAGTAGTTTACCATCTAACATGGAGTCTGTTCCAATTGTTAATGGACTTATTGGTAAGACTGTCCAACACATAAAAGCTGCTTTGAATTGTCCTATGTAG

Protein sequence

>MsaT036287.1

MEHHSEGSVSSKRLMEHHSEGSVSSDTHKRKKRRCNRHTADQIQRLEAVFKTCSYPDEKQRLQLGKELAMDPTKIKFWFQNRRTQMKTQQERDDNRTLVEENDKIRSENIAMRQALKNVICSTCDEQKLRIENARLKEELVRVSSIAAGYTGKSLSHLLPGSSSTSPNVPYQPAGLSNKEKSLMLGIAENAMQELILLMETNEPLWIKSNTDGRDTLNLETYETMFPRVNNQLKNPNIRIEASRNSGDVVMNALTLVEMFMDPNKWMELFPTIVTMAKTIEVISSQTKDGLSGSLQLMYEELQVLSPLVPIREFYFLRYCKQFEKGWAIVDVSYEFPHNKHFASKFRGLRLPSGCFIQNMPNGKSKVTWIEHVEVEDRNPVHMLYKNVINSGVAFGAEKWLTTLQRMCERLAYLMDSGHSGHIEGVISSPDGKRTMMKLTQRMVTNFCESINASASHRWTTLSTLNEIISNVLSNGNDVQEVVHIANVSCPGNCISVFKGFNTSNNNMLILQESCVDSSGSLVVSCPVDSSIMSEVDPSYIQLLPSGFAITSDGKQNDNNIQGGKSDNGDVASTSSNPNIGGSLLTVAFQIMVSSLPSNMESVPIVNGLIGKTVQHIKAALNCPM*