AlfalfaGEDB | MsaG036295

M. sativa ssp. caerulea / MsaG036295

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036295	XP_003622139.1	96.396	222	5	1	1	222	66	284	1.73e-150	429

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036295	sp\|Q9LSD5\|TCP20_ARATH	56.061	198	64	7	1	192	94	274	2.65e-48	164

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036295	tr\|G7L283\|G7L283_MEDTR	96.396	222	5	1	1	222	66	284	8.25e-151	429

TFs/TRs:

Gene ID	Type	Classification
MsaG036295	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000309	MsaG036295	0.844092	1.750449e-58	7.785254e-56
MsaG000327	MsaG036295	0.837247	1.066242e-56	3.821278e-54
MsaG000662	MsaG036295	0.811148	1.387095e-50	2.436056e-48
MsaG000760	MsaG036295	0.805409	2.288993e-49	3.503351e-47
MsaG001366	MsaG036295	0.838144	6.291270e-57	2.317680e-54
MsaG001911	MsaG036295	0.805029	2.746970e-49	4.167542e-47
MsaG002021	MsaG036295	0.852858	6.723535e-61	4.025016e-58
MsaG003381	MsaG036295	0.805854	1.847987e-49	2.857984e-47
MsaG003423	MsaG036295	0.837974	6.955167e-57	2.548892e-54
MsaG003679	MsaG036295	0.814347	2.786372e-51	5.298671e-49
MsaG003998	MsaG036295	0.805549	2.140751e-49	3.287054e-47
MsaG004012	MsaG036295	0.818874	2.725843e-52	5.819882e-50
MsaG004041	MsaG036295	0.805365	2.338698e-49	3.575745e-47
MsaG004059	MsaG036295	0.840853	1.253584e-57	5.026471e-55
MsaG004094	MsaG036295	0.835934	2.294852e-56	7.905150e-54
MsaG004097	MsaG036295	0.853010	6.088217e-61	3.664592e-58
MsaG004201	MsaG036295	0.824987	1.062737e-53	2.672390e-51
MsaG004517	MsaG036295	0.800974	1.876076e-48	2.592896e-46
MsaG004754	MsaG036295	0.883081	1.296090e-70	2.705764e-67
MsaG004830	MsaG036295	0.858674	1.370147e-62	1.013126e-59
MsaG004929	MsaG036295	0.871884	9.953497e-67	1.249850e-63
MsaG005234	MsaG036295	0.850688	2.754057e-60	1.528465e-57
MsaG005286	MsaG036295	0.813947	3.411743e-51	6.423088e-49
MsaG005405	MsaG036295	0.811429	1.205972e-50	2.132622e-48
MsaG005537	MsaG036295	0.829381	9.532977e-55	2.710380e-52
MsaG006165	MsaG036295	0.809384	3.316435e-50	5.579855e-48
MsaG006249	MsaG036295	0.824290	1.547850e-53	3.818995e-51
MsaG006334	MsaG036295	0.836851	1.344637e-56	4.761464e-54
MsaG006343	MsaG036295	0.805276	2.440590e-49	3.723774e-47
MsaG006352	MsaG036295	0.806070	1.665511e-49	2.588956e-47
MsaG006387	MsaG036295	0.839693	2.510960e-57	9.708381e-55
MsaG006420	MsaG036295	0.828614	1.459577e-54	4.060862e-52
MsaG006440	MsaG036295	0.809675	2.874153e-50	4.869844e-48
MsaG007038	MsaG036295	0.824184	1.638800e-53	4.031578e-51
MsaG007296	MsaG036295	0.813374	4.556064e-51	8.454607e-49
MsaG007526	MsaG036295	0.825915	6.423456e-54	1.657311e-51
MsaG007600	MsaG036295	0.825931	6.367775e-54	1.643673e-51
MsaG007602	MsaG036295	0.813244	4.864198e-51	8.997180e-49
MsaG007767	MsaG036295	0.866410	5.843322e-65	5.841561e-62
MsaG007798	MsaG036295	0.802065	1.123763e-48	1.592089e-46
MsaG008069	MsaG036295	0.844153	1.686469e-58	7.515646e-56
MsaG008105	MsaG036295	0.820355	1.256028e-52	2.788663e-50
MsaG008326	MsaG036295	0.810429	1.980984e-50	3.418640e-48
MsaG008425	MsaG036295	0.810436	1.973775e-50	3.406846e-48
MsaG009007	MsaG036295	0.835646	2.712977e-56	9.264857e-54
MsaG009392	MsaG036295	0.811156	1.381685e-50	2.427049e-48
MsaG009787	MsaG036295	0.812451	7.242099e-51	1.313347e-48
MsaG010263	MsaG036295	0.802002	1.157745e-48	1.637836e-46
MsaG010696	MsaG036295	0.826619	4.374991e-54	1.151026e-51
MsaG010697	MsaG036295	0.804996	2.791278e-49	4.231352e-47
MsaG010816	MsaG036295	0.807733	7.439238e-50	1.202913e-47
MsaG011082	MsaG036295	0.829898	7.149181e-55	2.062961e-52
MsaG011094	MsaG036295	0.802102	1.104129e-48	1.565553e-46
MsaG011348	MsaG036295	0.829437	9.244624e-55	2.632632e-52
MsaG012248	MsaG036295	0.800131	2.781249e-48	3.771473e-46
MsaG012394	MsaG036295	0.823158	2.841872e-53	6.799410e-51
MsaG012652	MsaG036295	0.825384	8.568856e-54	2.178350e-51
MsaG012704	MsaG036295	0.836931	1.282968e-56	4.554097e-54
MsaG013374	MsaG036295	0.817446	5.714714e-52	1.175912e-49
MsaG013903	MsaG036295	0.816852	7.760348e-52	1.572527e-49
MsaG014543	MsaG036295	0.820114	1.425786e-52	3.145399e-50
MsaG014544	MsaG036295	0.821342	7.465959e-53	1.701367e-50
MsaG014725	MsaG036295	0.805200	2.530957e-49	3.854975e-47
MsaG015318	MsaG036295	0.823044	3.021959e-53	7.208027e-51
MsaG016231	MsaG036295	0.813323	4.673157e-51	8.660961e-49
MsaG016916	MsaG036295	0.869629	5.447751e-66	6.215424e-63
MsaG016944	MsaG036295	0.806611	1.282378e-49	2.019166e-47
MsaG017056	MsaG036295	0.803017	7.166259e-49	1.037678e-46
MsaG017088	MsaG036295	0.815505	1.547040e-51	3.028973e-49
MsaG017170	MsaG036295	0.833119	1.160764e-55	3.677284e-53
MsaG017437	MsaG036295	0.840123	1.942425e-57	7.611916e-55
MsaG017689	MsaG036295	0.806184	1.576666e-49	2.457488e-47
MsaG017722	MsaG036295	0.849790	4.904552e-60	2.639153e-57
MsaG018113	MsaG036295	0.808148	6.078167e-50	9.926499e-48
MsaG018367	MsaG036295	0.831617	2.722124e-55	8.253811e-53
MsaG018523	MsaG036295	0.803081	6.953627e-49	1.008371e-46
MsaG018738	MsaG036295	0.838020	6.767788e-57	2.483716e-54
MsaG018902	MsaG036295	0.814630	2.414529e-51	4.624077e-49
MsaG018909	MsaG036295	0.827839	2.239106e-54	6.095768e-52
MsaG019007	MsaG036295	0.826168	5.594850e-54	1.453682e-51
MsaG019132	MsaG036295	0.801150	1.727485e-48	2.397066e-46
MsaG019273	MsaG036295	0.809556	3.047256e-50	5.148521e-48
MsaG019542	MsaG036295	0.853844	3.517222e-61	2.180411e-58
MsaG020062	MsaG036295	0.805043	2.728434e-49	4.140738e-47
MsaG020323	MsaG036295	0.841449	8.756094e-58	3.577880e-55
MsaG020393	MsaG036295	0.800419	2.431340e-48	3.318648e-46
MsaG020487	MsaG036295	0.823915	1.894580e-53	4.626845e-51
MsaG020731	MsaG036295	0.802086	1.112599e-48	1.577020e-46
MsaG020787	MsaG036295	0.845327	8.165923e-59	3.782139e-56
MsaG020815	MsaG036295	0.829503	8.910368e-55	2.542279e-52
MsaG020889	MsaG036295	0.804363	3.778483e-49	5.644487e-47
MsaG020933	MsaG036295	0.802927	7.477956e-49	1.080565e-46
MsaG020963	MsaG036295	0.801157	1.721776e-48	2.389511e-46
MsaG021423	MsaG036295	0.810947	1.532536e-50	2.678282e-48
MsaG021485	MsaG036295	0.809282	3.488065e-50	5.853951e-48
MsaG021859	MsaG036295	0.849083	7.703545e-60	4.046778e-57
MsaG021997	MsaG036295	0.809563	3.037641e-50	5.133132e-48
MsaG022437	MsaG036295	0.810989	1.501118e-50	2.626060e-48
MsaG022494	MsaG036295	0.812357	7.588717e-51	1.373026e-48
MsaG022737	MsaG036295	0.801941	1.191313e-48	1.683037e-46
MsaG022894	MsaG036295	0.845468	7.480701e-59	3.481021e-56
MsaG023120	MsaG036295	0.832825	1.372510e-55	4.310306e-53
MsaG023205	MsaG036295	0.848244	1.312556e-59	6.701379e-57
MsaG023344	MsaG036295	0.804477	3.577820e-49	5.358711e-47
MsaG023396	MsaG036295	0.801954	1.184125e-48	1.673362e-46
MsaG023778	MsaG036295	0.828180	1.855526e-54	5.099944e-52
MsaG023810	MsaG036295	0.817648	5.149614e-52	1.065077e-49
MsaG023820	MsaG036295	0.800084	2.842380e-48	3.850356e-46
MsaG023887	MsaG036295	0.831665	2.649082e-55	8.044181e-53
MsaG025722	MsaG036295	0.843703	2.222477e-58	9.761113e-56
MsaG025981	MsaG036295	0.819016	2.531623e-52	5.425497e-50
MsaG027027	MsaG036295	0.806157	1.597234e-49	2.487917e-47
MsaG027383	MsaG036295	0.812737	6.273880e-51	1.145874e-48
MsaG027749	MsaG036295	0.808640	4.777782e-50	7.895883e-48
MsaG027933	MsaG036295	0.803767	5.019454e-49	7.395303e-47
MsaG028091	MsaG036295	0.834633	4.873296e-56	1.614578e-53
MsaG028530	MsaG036295	0.803700	5.181465e-49	7.622297e-47
MsaG028713	MsaG036295	0.816173	1.099364e-51	2.189378e-49
MsaG028951	MsaG036295	0.814632	2.412232e-51	4.619857e-49
MsaG029273	MsaG036295	0.802223	1.042814e-48	1.482741e-46
MsaG029291	MsaG036295	0.827430	2.804115e-54	7.546540e-52
MsaG029459	MsaG036295	0.803376	6.044602e-49	8.825489e-47
MsaG029480	MsaG036295	0.806260	1.519583e-49	2.372878e-47
MsaG029719	MsaG036295	0.833021	1.227636e-55	3.877587e-53
MsaG029762	MsaG036295	0.816781	8.048324e-52	1.627952e-49
MsaG030158	MsaG036295	0.855034	1.598155e-61	1.033702e-58
MsaG030955	MsaG036295	0.810272	2.141388e-50	3.681149e-48
MsaG031026	MsaG036295	0.824212	1.614623e-53	3.975121e-51
MsaG032101	MsaG036295	0.825179	9.577811e-54	2.421206e-51
MsaG032775	MsaG036295	0.803779	4.990402e-49	7.354508e-47
MsaG032786	MsaG036295	0.820830	9.784369e-53	2.199602e-50
MsaG033410	MsaG036295	0.828326	1.711612e-54	4.723701e-52
MsaG033483	MsaG036295	0.861739	1.640428e-63	1.362885e-60
MsaG033485	MsaG036295	0.830774	4.375384e-55	1.294635e-52
MsaG033486	MsaG036295	0.845861	5.859106e-59	2.762099e-56
MsaG033596	MsaG036295	0.816380	9.891715e-52	1.980289e-49
MsaG033863	MsaG036295	0.810291	2.121096e-50	3.647968e-48
MsaG033989	MsaG036295	0.811560	1.129835e-50	2.004429e-48
MsaG034207	MsaG036295	0.834676	4.753369e-56	1.576936e-53
MsaG034240	MsaG036295	0.830653	4.683626e-55	1.380947e-52
MsaG035016	MsaG036295	0.805621	2.067991e-49	3.180769e-47
MsaG035054	MsaG036295	0.803438	5.868463e-49	8.580580e-47
MsaG035675	MsaG036295	0.814480	2.604906e-51	4.970011e-49
MsaG036295	MsaG036302	0.949895	1.611071e-107	3.626259e-102
MsaG036295	MsaG036308	0.828553	1.509921e-54	4.193784e-52
MsaG036295	MsaG036523	0.830412	5.361563e-55	1.570076e-52
MsaG036295	MsaG037009	0.814733	2.292069e-51	4.400874e-49
MsaG036295	MsaG039924	0.820383	1.237935e-52	2.750426e-50
MsaG036295	MsaG040356	0.804812	3.047895e-49	4.600708e-47
MsaG036295	MsaG040417	0.803991	4.511503e-49	6.681567e-47
MsaG036295	MsaG040578	0.831277	3.298195e-55	9.900970e-53
MsaG036295	MsaG040583	0.865050	1.562082e-64	1.478821e-61
MsaG036295	MsaG040682	0.835819	2.453285e-56	8.421644e-54
MsaG036295	MsaG041738	0.816721	8.299654e-52	1.676179e-49
MsaG036295	MsaG041743	0.809420	3.258063e-50	5.486634e-48
MsaG036295	MsaG042072	0.805667	2.021882e-49	3.113243e-47
MsaG036295	MsaG042142	0.861009	2.732462e-63	2.207539e-60
MsaG036295	MsaG042546	0.805686	2.004086e-49	3.087191e-47
MsaG036295	MsaG042898	0.818956	2.612502e-52	5.590044e-50
MsaG036295	MsaG043414	0.814554	2.509815e-51	4.797319e-49
MsaG036295	MsaG044233	0.805377	2.324563e-49	3.555182e-47
MsaG036295	MsaG044389	0.826746	4.081634e-54	1.077673e-51
MsaG036295	MsaG044390	0.830855	4.180886e-55	1.239979e-52
MsaG036295	MsaG044501	0.815854	1.294763e-51	2.557562e-49
MsaG036295	MsaG044624	0.836050	2.145689e-56	7.416825e-54
MsaG036295	MsaG045016	0.829813	7.495567e-55	2.157630e-52
MsaG036295	MsaG045108	0.814655	2.384106e-51	4.568671e-49
MsaG036295	MsaG045113	0.828565	1.500083e-54	4.167746e-52
MsaG036295	MsaG045345	0.817065	6.955748e-52	1.417306e-49
MsaG036295	MsaG045358	0.814953	2.049332e-51	3.956875e-49
MsaG036295	MsaG045461	0.832496	1.654624e-55	5.146978e-53
MsaG036295	MsaG045508	0.818021	4.245765e-52	8.866760e-50
MsaG036295	MsaG045574	0.802657	8.495644e-49	1.220078e-46
MsaG036295	MsaG045576	0.809986	2.466349e-50	4.210341e-48
MsaG036295	MsaG045689	0.809387	3.312250e-50	5.573172e-48
MsaG036295	MsaG045703	0.810315	2.096331e-50	3.607541e-48
MsaG036295	MsaG045873	0.855130	1.499517e-61	9.732491e-59
MsaG036295	MsaG045974	0.818653	3.057830e-52	6.491230e-50
MsaG036295	MsaG046303	0.849187	7.209432e-60	3.800765e-57
MsaG036295	MsaG046554	0.803500	5.697397e-49	8.342431e-47
MsaG036295	MsaG046977	0.822591	3.846350e-53	9.062983e-51
MsaG036295	MsaG047095	0.814739	2.284075e-51	4.386378e-49
MsaG036295	MsaG047152	0.800178	2.720336e-48	3.692783e-46
MsaG036295	MsaG002466	0.814140	3.094772e-51	5.854333e-49
MsaG036295	MsaG002307	0.811198	1.352892e-50	2.378899e-48
MsaG036295	MsaG007338	0.833419	9.781213e-56	3.126054e-53
MsaG036295	MsaG009207	0.824482	1.395773e-53	3.461778e-51
MsaG036295	MsaG014863	0.803171	6.662886e-49	9.682182e-47
MsaG036295	MsaG013872	0.844745	1.170919e-58	5.320643e-56
MsaG036295	MsaG013115	0.847932	1.598931e-59	8.079053e-57
MsaG036295	MsaG011654	0.827431	2.803986e-54	7.546208e-52
MsaG036295	MsaG013595	0.806408	1.414481e-49	2.216491e-47
MsaG036295	MsaG013399	0.822260	4.589790e-53	1.071818e-50
MsaG036295	MsaG013857	0.839962	2.137997e-57	8.336460e-55
MsaG036295	MsaG014799	0.842479	4.691230e-58	1.981191e-55
MsaG036295	MsaG014189	0.827668	2.461181e-54	6.667865e-52
MsaG036295	MsaG013372	0.802844	7.776109e-49	1.121479e-46
MsaG036295	MsaG016765	0.823651	2.183194e-53	5.293984e-51
MsaG036295	MsaG013071	0.852370	9.250108e-61	5.443756e-58
MsaG036295	MsaG027945	0.801099	1.769043e-48	2.451894e-46
MsaG036295	MsaG027790	0.807104	1.010201e-49	1.609085e-47
MsaG036295	MsaG027166	0.803462	5.802621e-49	8.488939e-47
MsaG036295	MsaG026536	0.802292	1.009755e-48	1.438021e-46
MsaG036295	MsaG025855	0.801353	1.570682e-48	2.189517e-46
MsaG036295	MsaG026793	0.801296	1.612878e-48	2.245470e-46
MsaG036295	MsaG033548	0.821048	8.718780e-53	1.971562e-50
MsaG036295	MsaG031226	0.807688	7.604919e-50	1.228351e-47
MsaG036295	MsaG033458	0.855656	1.055189e-61	6.981272e-59
MsaG036295	MsaG032865	0.820298	1.294311e-52	2.869312e-50
MsaG036295	MsaG034520	0.816277	1.042316e-51	2.081293e-49
MsaG036295	MsaG030000	0.820135	1.410021e-52	3.112367e-50
MsaG036295	MsaG037087	0.806295	1.494358e-49	2.335396e-47
MsaG036295	MsaG036457	0.800871	1.968315e-48	2.714097e-46
MsaG036295	MsaG038711	0.834330	5.799830e-56	1.904281e-53
MsaG036295	MsaG035726	0.845223	8.709819e-59	4.020242e-56
MsaG036295	MsaG036963	0.822159	4.842241e-53	1.127741e-50
MsaG036295	MsaG035918	0.844444	1.409413e-58	6.341086e-56
MsaG036295	MsaG039091	0.834740	4.581247e-56	1.522751e-53
MsaG036295	MsaG037372	0.809584	3.006033e-50	5.082323e-48
MsaG036295	MsaG043457	0.800983	1.868028e-48	2.582335e-46
MsaG036295	MsaG043823	0.854249	2.691552e-61	1.693051e-58
MsaG036295	MsaG043528	0.801625	1.382174e-48	1.938701e-46
MsaG036295	MsaG043170	0.808049	6.376630e-50	1.038949e-47
MsaG036295	MsaG047040	0.833795	7.886666e-56	2.548398e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036295	MtrunA17_Chr7g0224581	96.396	222	5	1	1	222	66	284	1.59e-154	429
MsaG036295	MtrunA17_Chr5g0416581	57.292	96	24	3	1	79	83	178	2.23e-25	102
MsaG036295	MtrunA17_Chr2g0277361	75.000	64	10	1	1	58	146	209	1.18e-24	100
MsaG036295	MtrunA17_Chr8g0350941	70.968	62	18	0	1	62	96	157	1.75e-24	99.0
MsaG036295	MtrunA17_Chr4g0060601	89.362	47	5	0	1	47	113	159	6.32e-24	98.6
MsaG036295	MtrunA17_Chr1g0204001	70.968	62	18	0	1	62	80	141	7.89e-24	97.1
MsaG036295	MtrunA17_Chr1g0180911	85.106	47	7	0	1	47	65	111	1.18e-23	94.0
MsaG036295	MtrunA17_Chr1g0164881	62.162	74	28	0	1	74	48	121	2.85e-23	93.6
MsaG036295	MtrunA17_Chr1g0211941	83.333	48	8	0	1	48	49	96	1.79e-22	92.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036295	AT3G27010.2	56.061	198	64	7	1	192	94	274	2.69e-49	164
MsaG036295	AT3G27010.1	56.061	198	64	7	1	192	94	274	2.69e-49	164
MsaG036295	AT1G58100.1	75.000	64	10	1	1	58	76	139	2.63e-25	102
MsaG036295	AT5G41030.1	35.437	206	69	11	1	204	84	227	1.06e-24	98.2
MsaG036295	AT2G45680.1	64.706	68	24	0	1	68	91	158	5.09e-24	98.2
MsaG036295	AT3G47620.1	91.489	47	4	0	1	47	133	179	6.34e-24	99.4
MsaG036295	AT1G69690.1	85.417	48	7	0	1	48	68	115	6.60e-24	97.4
MsaG036295	AT1G35560.1	73.438	64	11	1	1	58	71	134	7.78e-24	97.4
MsaG036295	AT1G72010.1	87.234	47	6	0	1	47	79	125	1.98e-23	97.1
MsaG036295	AT5G51910.1	65.625	64	22	0	1	64	73	136	2.30e-23	95.5
MsaG036295	AT5G51910.2	65.625	64	22	0	1	64	73	136	2.30e-23	95.5
MsaG036295	AT5G08330.1	72.881	59	16	0	1	59	47	105	2.63e-23	94.4
MsaG036295	AT5G23280.1	83.333	48	8	0	1	48	55	102	1.40e-22	92.4
MsaG036295	AT2G37000.1	84.091	44	7	0	1	44	59	102	4.32e-19	82.0
MsaG036295	AT3G45150.1	58.140	43	18	0	1	43	33	75	1.10e-11	61.6

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGATGCCTGGTTTGGAATT+AGG	0.117190	7:-31216639	MsaT036295.1:CDS
ATGTTAGTTCTACAAGTTTA+TGG	0.160920	7:-31216857	MsaT036295.1:CDS
GATGGGCCTGGTGGGCTTGA+TGG	0.187359	7:+31216898	None:intergenic
CAAGGTTCATCTTTGTCTTC+TGG	0.222188	7:-31216957	MsaT036295.1:CDS
TATTATTATTCTGCTGATTC+TGG	0.237820	7:+31216523	None:intergenic
CATCATCAAGTTGGTGGATA+TGG	0.242402	7:-31216831	MsaT036295.1:CDS
TATGCCAACAGGAACAAATT+TGG	0.247795	7:-31216709	MsaT036295.1:CDS
AGTTGAATGATAGGAATAAT+TGG	0.264011	7:-31216929	MsaT036295.1:CDS
AGATGCCTGGTTTGGAATTA+GGG	0.264298	7:-31216638	MsaT036295.1:CDS
ATGGGCCTGGTGGGCTTGAT+GGG	0.294523	7:+31216899	None:intergenic
GCTTCAGCTTTAGCTTCTTC+TGG	0.304919	7:-31216996	MsaT036295.1:CDS
CCTGTTGCAGCTATGATTGA+TGG	0.306906	7:+31217035	None:intergenic
GAATTGTGAGAATCATCTTT+AGG	0.322739	7:+31216498	None:intergenic
TTTCATCAATCATCATCTTC+TGG	0.335762	7:-31216807	MsaT036295.1:CDS
CTTGATGGGCCTGATGGGCC+TGG	0.347126	7:+31216886	None:intergenic
TTTCAACTCACAAGAGAGTT+AGG	0.358109	7:-31217107	MsaT036295.1:CDS
ATGGGCCTGATGGGCCTGGT+GGG	0.388474	7:+31216890	None:intergenic
CTGGTTTGCAGTTGAATGAT+AGG	0.398808	7:-31216938	MsaT036295.1:CDS
ATGCCAACAGGAACAAATTT+GGG	0.405289	7:-31216708	MsaT036295.1:CDS
TCAAGCCCACCAGGCCCATC+AGG	0.414777	7:-31216895	MsaT036295.1:CDS
ATCATAGCTGCAACAGGAAC+AGG	0.443120	7:-31217029	MsaT036295.1:CDS
ACTCAGATTTATCAGCAGAT+TGG	0.447988	7:-31216570	MsaT036295.1:CDS
TCTGGATTTGATATGCCAAC+AGG	0.449552	7:-31216720	MsaT036295.1:CDS
ACTCCCAAATTTGTTCCTGT+TGG	0.452759	7:+31216705	None:intergenic
GTTGAATGATAGGAATAATT+GGG	0.466051	7:-31216928	MsaT036295.1:CDS
AAATCAGCAGATGCCTGGTT+TGG	0.470684	7:-31216646	MsaT036295.1:CDS
AACTAACATGATGACCTTGA+TGG	0.471715	7:+31216871	None:intergenic
ATGACCTTGATGGGCCTGAT+GGG	0.473600	7:+31216881	None:intergenic
CCATCAATCATAGCTGCAAC+AGG	0.479395	7:-31217035	MsaT036295.1:CDS
GATGGGCCTGATGGGCCTGG+TGG	0.480862	7:+31216889	None:intergenic
TTGTCACAAGATGGACATAT+TGG	0.480930	7:-31216615	MsaT036295.1:CDS
GAATTAGGGTTGTCACAAGA+TGG	0.488895	7:-31216624	MsaT036295.1:CDS
ACTGTTGGTGAAAATAATAG+TGG	0.505174	7:-31216768	MsaT036295.1:CDS
TGGCCTCATCATCAAGTTGG+TGG	0.511204	7:-31216837	MsaT036295.1:CDS
GGTGCAAATCAGCAGATGCC+TGG	0.519917	7:-31216651	MsaT036295.1:CDS
TCAGACCCATCAAGCCCACC+AGG	0.525810	7:-31216904	MsaT036295.1:CDS
CAGATGGTGAAACAATTCAA+TGG	0.529264	7:-31217076	MsaT036295.1:CDS
AGATTGGTCAAAATCAAACT+AGG	0.530078	7:-31216554	MsaT036295.1:CDS
CAGGCCCATCAGGCCCATCA+AGG	0.530139	7:-31216885	MsaT036295.1:CDS
ATTCTTGCTGCACATAAAGC+TGG	0.536084	7:+31217131	None:intergenic
AACAGGAACAAATTTGGGAG+TGG	0.545963	7:-31216703	MsaT036295.1:CDS
GGTTTAGTAGCTACTACTGT+TGG	0.551441	7:-31216783	MsaT036295.1:CDS
GATGACCTTGATGGGCCTGA+TGG	0.557322	7:+31216880	None:intergenic
ACTAACATGATGACCTTGAT+GGG	0.557914	7:+31216872	None:intergenic
CATCAATCATCATCTTCTGG+TGG	0.564429	7:-31216804	MsaT036295.1:CDS
GGAACAAATTTGGGAGTGGG+AGG	0.568972	7:-31216699	MsaT036295.1:CDS
GAAGAAGCTAAAGCTGAAGC+TGG	0.576280	7:+31216999	None:intergenic
GGTAATACTTTGACACCACA+AGG	0.588387	7:-31216975	MsaT036295.1:CDS
ACAGGAACAAATTTGGGAGT+GGG	0.594534	7:-31216702	MsaT036295.1:CDS
GATTGGTCAAAATCAAACTA+GGG	0.595101	7:-31216553	MsaT036295.1:CDS
GAACAAATTTGGGAGTGGGA+GGG	0.598189	7:-31216698	MsaT036295.1:CDS
TTATGGCCTCATCATCAAGT+TGG	0.605767	7:-31216840	MsaT036295.1:CDS
GAGTTAGGTCATAAATCAGA+TGG	0.610512	7:-31217092	MsaT036295.1:CDS
TATCCACCAACTTGATGATG+AGG	0.610804	7:+31216834	None:intergenic
GACAACCCTAATTCCAAACC+AGG	0.628289	7:+31216633	None:intergenic
GAAGACAAAGATGAACCTTG+TGG	0.735014	7:+31216960	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	31216488	31217156	31216488	ID=MsaG036295
Chr7	mRNA	31216488	31217156	31216488	ID=MsaT036295.1;Parent=MsaG036295
Chr7	exon	31216488	31217156	31216488	ID=MsaT036295.1.exon1;Parent=MsaT036295.1
Chr7	CDS	31216488	31217156	31216488	ID=cds.MsaT036295.1;Parent=MsaT036295.1

Gene Sequence

>MsaT036295.1

ATGCCAGCTTTATGTGCAGCAAGAATCTTTCAACTCACAAGAGAGTTAGGTCATAAATCAGATGGTGAAACAATTCAATGGCTTTTACAACAATCTGAACCATCAATCATAGCTGCAACAGGAACAGGAACAATACCAGCTTCAGCTTTAGCTTCTTCTGGTAATACTTTGACACCACAAGGTTCATCTTTGTCTTCTGGTTTGCAGTTGAATGATAGGAATAATTGGGCTCAGACCCATCAAGCCCACCAGGCCCATCAGGCCCATCAAGGTCATCATGTTAGTTCTACAAGTTTATGGCCTCATCATCAAGTTGGTGGATATGGATTTCATCAATCATCATCTTCTGGTGGTTTAGTAGCTACTACTGTTGGTGAAAATAATAGTGGAAATTATTTTCAGAAAATTGGGTTTTCTGGATTTGATATGCCAACAGGAACAAATTTGGGAGTGGGAGGGATGAGTTTTACATCAATTTTGGGGGGTGCAAATCAGCAGATGCCTGGTTTGGAATTAGGGTTGTCACAAGATGGACATATTGGTGTGTTGAATCAACAAGCTTTGACTCAGATTTATCAGCAGATTGGTCAAAATCAAACTAGGGTTCAGCACCAGAATCAGCAGAATAATAATACTCCTAAAGATGATTCTCACAATTCAGAACAGTAG

Protein sequence

>MsaT036295.1

MPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALASSGNTLTPQGSSLSSGLQLNDRNNWAQTHQAHQAHQAHQGHHVSSTSLWPHHQVGGYGFHQSSSSGGLVATTVGENNSGNYFQKIGFSGFDMPTGTNLGVGGMSFTSILGGANQQMPGLELGLSQDGHIGVLNQQALTQIYQQIGQNQTRVQHQNQQNNNTPKDDSHNSEQ*