AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036306

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036306 MtrunA17_Chr7g0224801 97.076 171 4 1 1 170 1 171 8.91e-123 342
MsaG036306 MtrunA17_Chr8g0386241 67.742 93 30 0 69 161 80 172 1.78e-44 145
MsaG036306 MtrunA17_Chr7g0248721 58.140 129 46 4 39 166 93 214 2.60e-42 140
MsaG036306 MtrunA17_Chr1g0194481 63.953 86 31 0 64 149 130 215 1.08e-34 124
MsaG036306 MtrunA17_Chr5g0418781 65.432 81 28 0 68 148 100 180 1.67e-34 122
MsaG036306 MtrunA17_Chr8g0335811 44.056 143 66 2 37 170 90 227 4.59e-34 119
MsaG036306 MtrunA17_Chr7g0270191 63.953 86 31 0 64 149 117 202 4.67e-34 121
MsaG036306 MtrunA17_Chr2g0294231 65.823 79 27 0 76 154 187 265 1.74e-33 121
MsaG036306 MtrunA17_Chr5g0418191 40.000 150 73 2 28 160 239 388 4.71e-31 116
MsaG036306 MtrunA17_Chr5g0418191 56.140 57 24 1 92 148 151 206 7.30e-16 73.9
MsaG036306 MtrunA17_Chr4g0051881 65.753 73 25 0 78 150 164 236 1.02e-30 113
MsaG036306 MtrunA17_Chr1g0150801 53.061 98 43 1 55 149 62 159 2.06e-30 108
MsaG036306 MtrunA17_Chr7g0218081 53.763 93 43 0 72 164 390 482 2.64e-30 115
MsaG036306 MtrunA17_Chr7g0218081 56.140 57 24 1 92 148 228 283 6.23e-16 74.3
MsaG036306 MtrunA17_Chr3g0129361 60.811 74 29 0 75 148 127 200 4.93e-30 109
MsaG036306 MtrunA17_Chr8g0383351 46.212 132 68 2 20 148 85 216 6.09e-30 109
MsaG036306 MtrunA17_Chr4g0042831 45.082 122 55 2 53 162 227 348 1.41e-29 111
MsaG036306 MtrunA17_Chr4g0042831 50.649 77 32 2 92 162 145 221 1.19e-16 76.3
MsaG036306 MtrunA17_Chr5g0443131 64.789 71 25 0 78 148 143 213 8.46e-29 108
MsaG036306 MtrunA17_Chr3g0079691 44.167 120 53 1 45 150 434 553 9.06e-29 111
MsaG036306 MtrunA17_Chr3g0079691 53.448 58 26 1 92 149 280 336 5.78e-16 74.7
MsaG036306 MtrunA17_Chr3g0106491 57.500 80 34 0 71 150 344 423 3.93e-28 108
MsaG036306 MtrunA17_Chr3g0106491 50.000 72 31 2 82 149 184 254 1.03e-15 73.6
MsaG036306 MtrunA17_Chr4g0004911 53.409 88 41 0 63 150 307 394 1.37e-27 107
MsaG036306 MtrunA17_Chr4g0004911 44.928 69 38 0 81 149 173 241 3.84e-15 72.0
MsaG036306 MtrunA17_Chr5g0445311 56.410 78 34 0 73 150 345 422 2.78e-27 106
MsaG036306 MtrunA17_Chr5g0445311 31.638 177 88 4 4 149 82 256 4.26e-16 74.7
MsaG036306 MtrunA17_Chr3g0101131 54.762 84 38 0 73 156 396 479 3.06e-27 106
MsaG036306 MtrunA17_Chr3g0101131 51.515 66 31 1 92 157 243 307 1.57e-16 76.3
MsaG036306 MtrunA17_Chr8g0383251 52.174 92 40 2 64 154 82 170 4.45e-27 100
MsaG036306 MtrunA17_Chr3g0129321 56.338 71 31 0 78 148 104 174 7.34e-27 100
MsaG036306 MtrunA17_Chr7g0243891 51.136 88 43 0 63 150 345 432 2.01e-26 104
MsaG036306 MtrunA17_Chr7g0243891 51.724 58 27 1 92 149 216 272 4.81e-14 68.9
MsaG036306 MtrunA17_Chr5g0432161 49.451 91 46 0 71 161 400 490 2.16e-26 104
MsaG036306 MtrunA17_Chr5g0432161 50.794 63 30 1 92 154 244 305 1.65e-14 70.5
MsaG036306 MtrunA17_Chr4g0068541 58.904 73 30 0 76 148 192 264 2.78e-26 103
MsaG036306 MtrunA17_Chr7g0249311 42.188 128 65 2 35 162 343 461 3.96e-26 103
MsaG036306 MtrunA17_Chr7g0249311 54.386 57 25 1 92 148 179 234 2.00e-15 72.8
MsaG036306 MtrunA17_Chr7g0249301 52.564 78 37 0 73 150 273 350 1.23e-24 98.2
MsaG036306 MtrunA17_Chr7g0249301 50.000 58 28 1 91 148 61 117 3.02e-13 66.2
MsaG036306 MtrunA17_Chr4g0075201 46.429 84 44 1 68 150 243 326 5.09e-24 97.4
MsaG036306 MtrunA17_Chr7g0270831 46.591 88 46 1 76 162 200 287 5.82e-24 96.7
MsaG036306 MtrunA17_Chr2g0288871 50.000 80 39 1 72 150 285 364 1.38e-23 96.3
MsaG036306 MtrunA17_Chr7g0263531 44.340 106 49 2 52 155 329 426 7.59e-23 93.6
MsaG036306 MtrunA17_Chr7g0263531 53.571 56 25 1 93 148 190 244 4.60e-14 68.9
MsaG036306 MtrunA17_Chr3g0099641 47.126 87 45 1 69 154 228 314 1.70e-22 92.8
MsaG036306 MtrunA17_Chr2g0322391 45.783 83 44 1 69 150 326 408 1.89e-22 93.2
MsaG036306 MtrunA17_Chr4g0074001 52.632 76 36 0 73 148 340 415 6.32e-22 91.7
MsaG036306 MtrunA17_Chr2g0302391 45.263 95 47 2 55 148 178 268 1.81e-21 89.7
MsaG036306 MtrunA17_Chr4g0025051 48.810 84 42 1 71 153 314 397 3.25e-21 89.7
MsaG036306 MtrunA17_Chr4g0051181 48.684 76 38 1 76 150 227 302 3.64e-21 89.4
MsaG036306 MtrunA17_Chr1g0188941 43.590 78 44 0 73 150 32 109 7.51e-21 82.4
MsaG036306 MtrunA17_Chr7g0238921 61.404 57 22 0 92 148 124 180 8.66e-21 87.0
MsaG036306 MtrunA17_Chr7g0216891 42.697 89 50 1 75 162 202 290 8.66e-21 88.2
MsaG036306 MtrunA17_Chr5g0447701 52.857 70 33 0 79 148 239 308 2.49e-20 86.3
MsaG036306 MtrunA17_Chr5g0447701 50.000 60 29 1 90 149 90 148 5.42e-13 65.9
MsaG036306 MtrunA17_Chr4g0060271 48.052 77 39 1 75 150 238 314 3.56e-20 86.7
MsaG036306 MtrunA17_Chr4g0025061 48.750 80 40 1 72 150 340 419 4.62e-20 86.3
MsaG036306 MtrunA17_Chr2g0333851 50.633 79 36 2 74 149 149 227 3.06e-19 82.8
MsaG036306 MtrunA17_Chr1g0189391 38.017 121 66 2 37 148 34 154 4.81e-19 82.4
MsaG036306 MtrunA17_Chr6g0485431 46.154 78 41 1 78 154 140 217 1.25e-18 81.6
MsaG036306 MtrunA17_Chr1g0147881 34.109 129 84 1 24 151 194 322 2.25e-18 80.5
MsaG036306 MtrunA17_Chr3g0136961 55.932 59 25 1 91 148 137 195 5.35e-18 79.0
MsaG036306 MtrunA17_Chr8g0387981 46.237 93 42 2 63 147 98 190 1.61e-17 78.6
MsaG036306 MtrunA17_Chr4g0001361 52.459 61 28 1 90 149 160 220 2.40e-17 77.4
MsaG036306 MtrunA17_Chr1g0150271 43.750 80 41 2 75 150 81 160 2.72e-17 76.6
MsaG036306 MtrunA17_Chr1g0150281 52.459 61 28 1 93 152 141 201 2.58e-16 74.3
MsaG036306 MtrunA17_Chr8g0347251 55.000 60 24 1 91 147 135 194 2.97e-16 74.7
MsaG036306 MtrunA17_Chr7g0244981 34.921 126 63 3 25 147 71 180 3.64e-16 73.9
MsaG036306 MtrunA17_Chr7g0270051 50.000 58 28 1 93 149 54 111 4.90e-16 73.2
MsaG036306 MtrunA17_Chr7g0275531 56.667 60 23 1 91 147 117 176 6.11e-16 73.9
MsaG036306 MtrunA17_Chr2g0315361 38.679 106 58 3 61 162 120 222 6.24e-16 73.6
MsaG036306 MtrunA17_Chr4g0024391 40.741 81 47 1 71 150 208 288 2.48e-15 72.8
MsaG036306 MtrunA17_Chr3g0126391 55.000 60 24 1 91 147 132 191 2.54e-15 72.0
MsaG036306 MtrunA17_Chr2g0315381 42.268 97 51 3 70 162 123 218 3.21e-15 71.6
MsaG036306 MtrunA17_Chr7g0244971 35.878 131 77 4 29 155 62 189 3.28e-15 71.2
MsaG036306 MtrunA17_Chr5g0401821 37.778 90 55 1 68 156 175 264 4.58e-15 70.9
MsaG036306 MtrunA17_Chr4g0053281 46.875 64 33 1 88 150 262 325 5.13e-15 71.2
MsaG036306 MtrunA17_Chr5g0447711 43.056 72 41 0 77 148 215 286 8.02e-15 70.5
MsaG036306 MtrunA17_Chr2g0293481 33.628 113 68 2 44 149 213 325 9.80e-15 70.9
MsaG036306 MtrunA17_Chr8g0379461 46.154 65 32 2 93 154 77 141 1.58e-14 68.9
MsaG036306 MtrunA17_Chr4g0071521 46.774 62 32 1 88 148 241 302 1.61e-14 69.7
MsaG036306 MtrunA17_Chr8g0334541 39.000 100 57 2 51 147 63 161 3.08e-14 68.6
MsaG036306 MtrunA17_Chr5g0428351 42.353 85 44 3 68 147 157 241 4.87e-14 68.2
MsaG036306 MtrunA17_Chr8g0348311 48.276 58 29 1 93 149 156 213 6.53e-14 68.2
MsaG036306 MtrunA17_Chr8g0387501 50.000 60 29 1 91 149 128 187 7.75e-14 67.4
MsaG036306 MtrunA17_Chr1g0184691 45.161 62 33 1 88 148 289 350 3.62e-13 66.2
MsaG036306 MtrunA17_Chr7g0228941 35.577 104 54 2 58 148 6 109 5.83e-13 62.4
MsaG036306 MtrunA17_Chr3g0128671 42.169 83 41 3 69 147 106 185 6.59e-13 65.1
MsaG036306 MtrunA17_Chr1g0202461 33.333 99 63 3 51 148 222 318 6.67e-13 65.5
MsaG036306 MtrunA17_Chr2g0315371 40.741 81 44 2 70 147 120 199 8.79e-13 64.7
MsaG036306 MtrunA17_Chr8g0350621 40.741 81 37 2 92 161 111 191 1.09e-12 64.3
MsaG036306 MtrunA17_Chr7g0248691 44.262 61 33 1 90 149 152 212 1.62e-12 64.3
MsaG036306 MtrunA17_Chr3g0139021 45.161 62 33 1 88 148 310 371 1.88e-12 64.3
MsaG036306 MtrunA17_Chr2g0284321 34.694 98 58 2 54 150 2 94 3.03e-12 62.4
MsaG036306 MtrunA17_Chr5g0432071 50.877 57 27 1 92 148 104 159 4.10e-12 62.0
MsaG036306 MtrunA17_Chr2g0319961 39.189 74 42 2 83 153 71 144 1.11e-11 61.2
MsaG036306 MtrunA17_Chr2g0289181 38.462 78 45 2 93 169 15 90 2.24e-11 60.1
MsaG036306 MtrunA17_Chr5g0419241 45.833 48 26 0 71 118 56 103 4.36e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036306 AT5G13080.1 86.957 92 12 0 79 170 54 145 1.13e-57 177
MsaG036306 AT3G01970.1 78.261 92 20 0 79 170 52 143 4.80e-51 160
MsaG036306 AT5G41570.1 58.929 112 46 0 59 170 65 176 4.19e-43 141
MsaG036306 AT1G64000.1 62.376 101 38 0 68 168 90 190 1.21e-41 138
MsaG036306 AT2G46130.1 56.731 104 45 0 67 170 5 108 2.13e-41 135
MsaG036306 AT2G46130.2 52.885 104 45 1 67 170 5 104 7.10e-36 120
MsaG036306 AT1G69310.4 62.963 81 30 0 68 148 123 203 4.44e-34 121
MsaG036306 AT1G69310.2 62.963 81 30 0 68 148 123 203 4.44e-34 121
MsaG036306 AT1G69310.1 62.963 81 30 0 68 148 123 203 4.44e-34 121
MsaG036306 AT4G18170.1 64.286 84 30 0 67 150 147 230 5.27e-33 119
MsaG036306 AT2G44745.1 59.091 88 35 1 68 154 121 208 8.21e-33 116
MsaG036306 AT4G39410.1 45.385 130 64 2 46 170 172 299 3.00e-32 117
MsaG036306 AT2G47260.1 62.353 85 32 0 64 148 146 230 4.56e-32 117
MsaG036306 AT1G29860.1 59.551 89 33 1 76 161 120 208 1.10e-31 115
MsaG036306 AT5G49520.1 62.821 78 29 0 76 153 205 282 2.95e-31 116
MsaG036306 AT5G46350.1 65.753 73 25 0 78 150 169 241 4.23e-30 112
MsaG036306 AT5G07100.2 50.000 108 46 1 43 150 100 199 1.53e-28 105
MsaG036306 AT5G07100.2 46.032 63 34 0 92 154 24 86 5.47e-13 64.7
MsaG036306 AT5G07100.4 50.000 108 46 1 43 150 100 199 1.53e-28 105
MsaG036306 AT5G07100.4 46.032 63 34 0 92 154 24 86 5.47e-13 64.7
MsaG036306 AT5G07100.5 50.000 108 46 1 43 150 100 199 1.53e-28 105
MsaG036306 AT5G07100.5 46.032 63 34 0 92 154 24 86 5.47e-13 64.7
MsaG036306 AT5G07100.3 50.000 108 46 1 43 150 100 199 1.53e-28 105
MsaG036306 AT5G07100.3 46.032 63 34 0 92 154 24 86 5.47e-13 64.7
MsaG036306 AT1G69310.3 58.025 81 30 1 68 148 123 199 1.55e-28 107
MsaG036306 AT5G07100.1 50.000 108 46 1 43 150 193 292 1.56e-28 107
MsaG036306 AT5G07100.1 46.032 63 34 0 92 154 117 179 4.27e-13 66.2
MsaG036306 AT5G64810.1 51.190 84 41 0 65 148 83 166 2.79e-28 104
MsaG036306 AT4G26640.5 55.682 88 37 1 73 158 186 273 4.25e-28 107
MsaG036306 AT4G26640.5 55.000 60 26 1 90 149 33 91 1.91e-16 75.9
MsaG036306 AT4G26640.6 55.682 88 37 1 73 158 186 273 4.25e-28 107
MsaG036306 AT4G26640.6 55.000 60 26 1 90 149 33 91 1.91e-16 75.9
MsaG036306 AT4G26640.4 55.682 88 37 1 73 158 186 273 4.25e-28 107
MsaG036306 AT4G26640.4 55.000 60 26 1 90 149 33 91 1.91e-16 75.9
MsaG036306 AT4G26640.3 55.682 88 37 1 73 158 186 273 4.25e-28 107
MsaG036306 AT4G26640.3 55.000 60 26 1 90 149 33 91 1.91e-16 75.9
MsaG036306 AT4G26640.7 55.682 88 37 1 73 158 322 409 5.97e-28 108
MsaG036306 AT4G26640.7 55.000 60 26 1 90 149 169 227 1.26e-16 76.6
MsaG036306 AT4G26640.1 55.682 88 37 1 73 158 290 377 6.37e-28 108
MsaG036306 AT4G26640.1 55.000 60 26 1 90 149 137 195 1.48e-16 76.6
MsaG036306 AT2G30250.1 55.682 88 39 0 63 150 299 386 7.35e-28 107
MsaG036306 AT2G30250.1 33.803 142 75 6 19 149 89 222 1.79e-12 64.7
MsaG036306 AT4G26640.2 55.682 88 37 1 73 158 362 449 7.87e-28 108
MsaG036306 AT4G26640.2 55.000 60 26 1 90 149 209 267 1.23e-16 76.6
MsaG036306 AT3G62340.1 60.000 80 32 0 70 149 96 175 9.35e-28 105
MsaG036306 AT1G13960.1 45.528 123 61 2 29 148 346 465 3.03e-27 107
MsaG036306 AT1G13960.1 59.649 57 22 1 92 148 229 284 2.38e-16 75.9
MsaG036306 AT2G03340.1 46.429 112 59 1 39 150 363 473 3.30e-27 106
MsaG036306 AT2G03340.1 53.846 65 29 1 92 156 250 313 2.72e-16 75.9
MsaG036306 AT1G13960.2 62.500 72 27 0 77 148 241 312 3.35e-27 105
MsaG036306 AT1G13960.2 59.649 57 22 1 92 148 76 131 6.67e-16 74.3
MsaG036306 AT5G56270.1 57.692 78 33 0 73 150 468 545 3.12e-26 104
MsaG036306 AT5G56270.1 50.877 57 27 1 92 148 273 328 2.75e-14 70.1
MsaG036306 AT2G38470.1 57.692 78 33 0 73 150 343 420 4.50e-26 103
MsaG036306 AT2G38470.1 50.000 58 28 1 92 149 184 240 7.57e-13 65.9
MsaG036306 AT4G26440.1 47.273 110 55 2 42 150 323 430 5.32e-26 103
MsaG036306 AT4G26440.1 52.632 57 26 1 92 148 178 233 3.02e-15 72.8
MsaG036306 AT3G01080.2 56.410 78 34 0 73 150 325 402 7.33e-26 102
MsaG036306 AT3G01080.2 54.386 57 25 1 92 148 205 260 1.43e-14 70.9
MsaG036306 AT3G01080.1 56.410 78 34 0 73 150 287 364 7.39e-26 102
MsaG036306 AT3G01080.1 54.386 57 25 1 92 148 167 222 1.72e-14 70.5
MsaG036306 AT5G26170.1 57.143 70 30 0 79 148 100 169 1.48e-25 96.7
MsaG036306 AT4G04450.2 40.164 122 65 3 40 157 147 264 2.66e-24 98.2
MsaG036306 AT4G04450.1 40.164 122 65 3 40 157 241 358 1.89e-23 96.3
MsaG036306 AT2G21900.1 43.333 90 48 1 63 149 77 166 1.02e-22 90.1
MsaG036306 AT2G04880.2 50.649 77 38 0 72 148 263 339 2.30e-22 92.8
MsaG036306 AT2G04880.2 58.333 60 24 1 90 149 109 167 4.41e-17 78.2
MsaG036306 AT2G04880.1 50.649 77 38 0 72 148 287 363 2.48e-22 92.8
MsaG036306 AT2G04880.1 58.333 60 24 1 90 149 109 167 4.78e-17 77.8
MsaG036306 AT1G68150.1 48.684 76 38 1 76 150 219 294 1.65e-21 90.1
MsaG036306 AT1G55600.1 50.649 77 38 0 73 149 288 364 8.06e-21 88.6
MsaG036306 AT5G15130.2 47.561 82 40 2 76 154 169 250 1.41e-20 88.2
MsaG036306 AT5G15130.1 47.561 82 40 2 76 154 211 292 1.45e-20 88.2
MsaG036306 AT4G01720.1 50.000 76 37 1 76 150 223 298 1.49e-20 87.8
MsaG036306 AT1G18860.1 46.753 77 40 1 75 150 222 298 1.64e-20 87.8
MsaG036306 AT4G30935.1 42.157 102 59 0 47 148 286 387 1.90e-20 87.4
MsaG036306 AT4G22070.4 46.429 84 44 1 68 150 273 356 3.64e-20 87.0
MsaG036306 AT4G22070.3 46.429 84 44 1 68 150 273 356 3.64e-20 87.0
MsaG036306 AT4G22070.2 46.429 84 44 1 68 150 273 356 3.64e-20 87.0
MsaG036306 AT4G22070.1 46.429 84 44 1 68 150 273 356 3.64e-20 87.0
MsaG036306 AT1G62300.1 46.988 83 43 1 69 150 289 371 3.95e-20 87.0
MsaG036306 AT2G37260.2 46.914 81 42 1 68 148 244 323 5.83e-20 85.5
MsaG036306 AT2G37260.2 55.357 56 24 1 93 148 84 138 1.54e-13 67.4
MsaG036306 AT3G56400.1 36.471 170 77 6 20 161 32 198 5.84e-20 84.7
MsaG036306 AT2G37260.3 46.914 81 42 1 68 148 246 325 6.12e-20 85.5
MsaG036306 AT2G37260.3 55.357 56 24 1 93 148 86 140 1.56e-13 67.4
MsaG036306 AT2G37260.1 46.914 81 42 1 68 148 326 405 7.38e-20 85.9
MsaG036306 AT2G37260.1 55.357 56 24 1 93 148 166 220 1.54e-13 67.8
MsaG036306 AT5G43290.1 55.932 59 26 0 90 148 112 170 1.14e-18 80.9
MsaG036306 AT1G80840.1 40.000 100 54 2 63 156 112 211 1.84e-18 80.9
MsaG036306 AT2G40750.1 46.591 88 39 2 68 147 123 210 3.30e-17 77.8
MsaG036306 AT5G24110.1 43.011 93 44 4 63 147 80 171 4.62e-17 77.0
MsaG036306 AT1G69810.2 39.815 108 48 4 45 150 113 205 6.30e-17 77.0
MsaG036306 AT1G69810.1 39.815 108 48 4 45 150 171 263 8.57e-17 77.0
MsaG036306 AT4G31800.2 52.632 57 26 1 93 148 112 168 2.55e-16 74.3
MsaG036306 AT2G25000.2 52.542 59 27 1 91 148 102 160 2.79e-16 73.9
MsaG036306 AT2G25000.4 52.542 59 27 1 91 148 102 160 2.79e-16 73.9
MsaG036306 AT4G31800.1 52.632 57 26 1 93 148 177 233 3.10e-16 74.7
MsaG036306 AT2G25000.3 54.386 57 25 1 93 148 126 182 4.03e-16 73.6
MsaG036306 AT2G25000.1 54.386 57 25 1 93 148 147 203 5.45e-16 73.6
MsaG036306 AT2G40740.1 55.932 59 23 1 92 147 173 231 7.60e-16 73.6
MsaG036306 AT2G40740.3 55.932 59 23 1 92 147 182 240 1.00e-15 73.2
MsaG036306 AT2G30590.1 46.032 63 33 1 88 149 309 371 1.99e-15 73.2
MsaG036306 AT2G46400.1 40.741 108 54 3 68 167 80 185 2.96e-15 72.0
MsaG036306 AT1G30650.1 40.659 91 46 4 66 149 186 275 3.50e-15 72.4
MsaG036306 AT5G52830.1 46.154 65 34 1 86 149 159 223 4.46e-15 72.0
MsaG036306 AT4G24240.1 42.857 77 41 2 88 161 277 353 4.48e-15 72.0
MsaG036306 AT3G01080.3 54.386 57 25 1 92 148 205 260 4.92e-15 71.6
MsaG036306 AT2G34830.1 39.560 91 47 4 66 149 184 273 5.38e-15 72.0
MsaG036306 AT4G31550.2 48.387 62 31 1 88 148 241 302 5.56e-15 71.6
MsaG036306 AT4G31550.1 48.387 62 31 1 88 148 242 303 5.59e-15 71.6
MsaG036306 AT2G34830.2 39.560 91 47 4 66 149 193 282 5.95e-15 72.0
MsaG036306 AT4G23810.1 57.627 59 22 1 92 147 158 216 6.39e-15 71.2
MsaG036306 AT2G24570.1 48.387 62 31 1 88 148 239 300 1.61e-14 70.1
MsaG036306 AT2G23320.1 44.444 63 34 1 89 150 237 299 1.70e-14 70.1
MsaG036306 AT5G28650.1 45.161 62 33 1 88 148 258 319 6.08e-14 68.6
MsaG036306 AT1G29280.1 44.444 63 34 1 93 154 75 137 7.47e-14 67.8
MsaG036306 AT3G58710.1 40.000 75 44 1 83 156 62 136 8.93e-14 67.8
MsaG036306 AT3G58710.2 40.000 75 44 1 83 156 61 135 9.40e-14 67.4
MsaG036306 AT5G45260.1 38.554 83 46 2 72 149 1186 1268 1.37e-13 68.2
MsaG036306 AT3G04670.1 45.161 62 33 1 88 148 258 319 1.76e-13 67.4
MsaG036306 AT5G45050.4 51.724 58 27 1 93 149 1042 1099 2.47e-13 67.4
MsaG036306 AT4G01250.1 48.276 58 29 1 93 149 129 186 2.50e-13 66.6
MsaG036306 AT5G45050.2 51.724 58 27 1 93 149 1153 1210 2.64e-13 67.4
MsaG036306 AT5G45050.1 51.724 58 27 1 93 149 1181 1238 2.67e-13 67.4
MsaG036306 AT4G11070.2 54.237 59 24 1 92 147 109 167 2.72e-13 66.2
MsaG036306 AT4G11070.1 54.237 59 24 1 92 147 141 199 3.31e-13 66.2
MsaG036306 AT1G66560.1 49.153 59 27 1 92 147 103 161 4.60e-13 65.5
MsaG036306 AT5G01900.1 36.937 111 56 4 67 164 84 193 8.23e-13 64.7
MsaG036306 AT4G23550.1 42.857 63 35 1 89 150 137 199 1.58e-12 64.3
MsaG036306 AT4G12020.3 50.000 58 28 1 91 148 467 523 3.11e-12 64.3
MsaG036306 AT4G12020.3 41.333 75 43 1 38 112 588 661 7.37e-12 63.2
MsaG036306 AT4G12020.10 50.000 58 28 1 91 148 467 523 3.17e-12 64.3
MsaG036306 AT4G12020.10 41.333 75 43 1 38 112 588 661 7.88e-12 63.2
MsaG036306 AT4G12020.4 50.000 58 28 1 91 148 467 523 3.17e-12 64.3
MsaG036306 AT4G12020.4 41.333 75 43 1 38 112 588 661 7.51e-12 63.2
MsaG036306 AT4G12020.2 50.000 58 28 1 91 148 467 523 3.21e-12 64.3
MsaG036306 AT4G12020.2 41.333 75 43 1 38 112 588 661 7.23e-12 63.2
MsaG036306 AT4G12020.7 50.000 58 28 1 91 148 467 523 3.35e-12 64.3
MsaG036306 AT4G12020.7 41.333 75 43 1 38 112 588 661 8.56e-12 63.2
MsaG036306 AT4G12020.6 50.000 58 28 1 91 148 467 523 3.41e-12 64.3
MsaG036306 AT4G12020.6 41.333 75 43 1 38 112 588 661 8.55e-12 63.2
MsaG036306 AT4G12020.8 50.000 58 28 1 91 148 467 523 3.41e-12 64.3
MsaG036306 AT4G12020.8 41.333 75 43 1 38 112 588 661 8.55e-12 63.2
MsaG036306 AT4G12020.5 50.000 58 28 1 91 148 400 456 3.55e-12 64.3
MsaG036306 AT4G12020.5 41.333 75 43 1 38 112 521 594 8.74e-12 63.2
MsaG036306 AT4G12020.1 50.000 58 28 1 91 148 467 523 3.58e-12 63.9
MsaG036306 AT4G12020.1 41.333 75 43 1 38 112 588 661 8.40e-12 63.2
MsaG036306 AT4G12020.9 50.000 58 28 1 91 148 467 523 3.58e-12 63.9
MsaG036306 AT4G12020.9 41.333 75 43 1 38 112 588 661 8.40e-12 63.2
MsaG036306 AT4G12020.11 50.000 58 28 1 91 148 467 523 5.27e-12 63.5
MsaG036306 AT4G12020.11 41.333 75 43 1 38 112 588 661 1.12e-11 62.8
MsaG036306 AT1G66600.1 48.333 60 28 1 91 147 102 161 1.15e-11 61.6
MsaG036306 AT1G66550.2 47.458 59 28 1 92 147 103 161 1.28e-11 61.2
MsaG036306 AT1G66550.1 47.458 59 28 1 92 147 108 166 1.58e-11 61.2

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACACTAATTTCATTAT+TGG 0.193844 7:-31583917 None:intergenic
CTTCTTCTTTCACATCTTCA+TGG 0.208635 7:-31583945 None:intergenic
TCAAACCACTCGTTGGAATT+TGG 0.224530 7:-31583855 None:intergenic
CAAAGCTCAAATGCATTTCT+TGG 0.267190 7:+31583883 MsaT036306.1:CDS
TTATCAGTTGTCTTCTCAAT+AGG 0.283286 7:-31585161 None:intergenic
CACCACTACTCCCTCATCTT+TGG 0.284911 7:-31585111 None:intergenic
CTAGTTTGAAAAGCATATTT+AGG 0.304775 7:-31584036 None:intergenic
GGTTATAGATGGAGGAAATA+TGG 0.369235 7:+31584084 MsaT036306.1:CDS
TATCAGTTGTCTTCTCAATA+GGG 0.414753 7:-31585160 None:intergenic
TACTTGATGATGGTTATAGA+TGG 0.458004 7:+31584073 MsaT036306.1:CDS
ATTCCAACGAGTGGTTTGAA+TGG 0.460500 7:+31583859 MsaT036306.1:CDS
GGAATTTGGTAGCTTGAAGA+AGG 0.478210 7:-31583841 None:intergenic
TACTATAGGTGCACACATCA+AGG 0.491105 7:+31585056 MsaT036306.1:CDS
CAAGTTGATATACTTGATGA+TGG 0.495665 7:+31584063 MsaT036306.1:CDS
ACACTAATTTCATTATTGGT+AGG 0.496138 7:-31583913 None:intergenic
AAGATGTGAAAGAAGAAGAA+GGG 0.502613 7:+31583950 MsaT036306.1:CDS
GAAGATGTGAAAGAAGAAGA+AGG 0.504088 7:+31583949 MsaT036306.1:CDS
AGCTACCAAATTCCAACGAG+TGG 0.563952 7:+31583850 MsaT036306.1:CDS
TGACCATTCAAACCACTCGT+TGG 0.583259 7:-31583862 None:intergenic
TTGATGATGGTTATAGATGG+AGG 0.595386 7:+31584076 MsaT036306.1:CDS
AACCAAAGATGAGGGAGTAG+TGG 0.599632 7:+31585109 MsaT036306.1:CDS
ATTTGGTAGCTTGAAGAAGG+AGG 0.610801 7:-31583838 None:intergenic
GCAACGGTTAACCAAAGATG+AGG 0.611921 7:+31585100 MsaT036306.1:CDS
ACTATAGGTGCACACATCAA+GGG 0.643060 7:+31585057 MsaT036306.1:CDS
GTAGTGGTGACAACATATGA+AGG 0.645291 7:+31585125 MsaT036306.1:CDS
ATGTAAAGAAACAAGTGCAA+CGG 0.646137 7:+31585084 MsaT036306.1:CDS
TAGCTTGAAGAAGGAGGACA+AGG 0.674996 7:-31583832 None:intergenic
AGGAGGACAAGGAAACAACA+TGG 0.676843 7:-31583821 None:intergenic
CAACGGTTAACCAAAGATGA+GGG 0.686631 7:+31585101 MsaT036306.1:CDS
AATGTTAGTATTGATCAACA+AGG 0.714922 7:+31583979 MsaT036306.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 31583805 31585229 31583805 ID=MsaG036306
Chr7 mRNA 31583805 31585229 31583805 ID=MsaT036306.1;Parent=MsaG036306
Chr7 exon 31583805 31584139 31583805 ID=MsaT036306.1.exon1;Parent=MsaT036306.1
Chr7 CDS 31583805 31584139 31583805 ID=cds.MsaT036306.1;Parent=MsaT036306.1
Chr7 exon 31585052 31585229 31585052 ID=MsaT036306.1.exon2;Parent=MsaT036306.1
Chr7 CDS 31585052 31585229 31585052 ID=cds.MsaT036306.1;Parent=MsaT036306.1
Gene Sequence

>MsaT036306.1

ATGGAGAACAATTATTCCATGTTGTTTCCTTGTCCTCCTTCTTCAAGCTACCAAATTCCAACGAGTGGTTTGAATGGTCAAAGCTCAAATGCATTTCTTGGTTTGAAACCTACCAATAATGAAATTAGTGTTAATCATGACCATGAAGATGTGAAAGAAGAAGAAGGGAGTGTTAATGTTAGTATTGATCAACAAGGTGTTAAAAAGAAAGGTGAGAAAAAGGCTAAGAAGCCTAAATATGCTTTTCAAACTAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGGAAATATGGTCAAAAAGCTGTTAAAAACAACAAATTTCCCAGGAGCTACTATAGGTGCACACATCAAGGGTGCAATGTAAAGAAACAAGTGCAACGGTTAACCAAAGATGAGGGAGTAGTGGTGACAACATATGAAGGAGTGCATACTCACCCTATTGAGAAGACAACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTCTAA
Protein sequence

>MsaT036306.1

MENNYSMLFPCPPSSSYQIPTSGLNGQSSNAFLGLKPTNNEISVNHDHEDVKEEEGSVNVSIDQQGVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF*