AlfalfaGEDB | MsaG036316

M. sativa ssp. caerulea / MsaG036316

KEGG: K21994
GO: GO:0005575 GO:0016020
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036316	PNX82010.1	80.921	152	29	0	5	156	6	157	7.35e-89	266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036316	sp\|P59468\|LBD24_ARATH	67.327	101	33	0	5	105	6	106	1.55e-46	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036316	tr\|A0A2K3LTZ7\|A0A2K3LTZ7_TRIPR	80.921	152	29	0	5	156	6	157	3.51e-89	266

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036316	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000260	MsaG036316	0.829077	1.129082e-54	3.182404e-52
MsaG000344	MsaG036316	0.800737	2.096028e-48	2.881533e-46
MsaG001145	MsaG036316	0.814332	2.807873e-51	5.337396e-49
MsaG001483	MsaG036316	0.810981	1.507256e-50	2.636266e-48
MsaG001503	MsaG036316	0.814060	3.223321e-51	6.085254e-49
MsaG001992	MsaG036316	0.814466	2.624470e-51	5.005467e-49
MsaG002146	MsaG036316	0.830338	5.589448e-55	1.633319e-52
MsaG002355	MsaG036316	0.809544	3.065196e-50	5.177360e-48
MsaG002605	MsaG036316	0.806340	1.462186e-49	2.287523e-47
MsaG002691	MsaG036316	0.828042	2.002622e-54	5.482915e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036316	MtrunA17_Chr5g0444351	74.359	156	28	1	1	156	2	145	3.44e-83	241
MsaG036316	MtrunA17_Chr7g0225111	93.913	115	7	0	1	115	2	116	5.54e-80	232
MsaG036316	MtrunA17_Chr2g0311601	50.926	108	53	0	2	109	11	118	6.10e-40	132
MsaG036316	MtrunA17_Chr5g0437571	51.351	111	54	0	3	113	5	115	4.66e-38	127
MsaG036316	MtrunA17_Chr5g0438091	46.970	132	70	0	5	136	40	171	9.07e-38	127
MsaG036316	MtrunA17_Chr4g0043421	50.459	109	54	0	2	110	13	121	4.49e-37	125
MsaG036316	MtrunA17_Chr3g0129071	51.376	109	53	0	2	110	45	153	1.78e-36	125
MsaG036316	MtrunA17_Chr3g0106101	48.182	110	57	0	3	112	6	115	1.92e-36	124
MsaG036316	MtrunA17_Chr4g0058651	51.376	109	53	0	3	111	10	118	5.04e-36	123
MsaG036316	MtrunA17_Chr3g0114061	52.427	103	49	0	2	104	6	108	8.40e-36	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036316	AT3G26660.1	67.327	101	33	0	5	105	6	106	1.57e-47	150
MsaG036316	AT3G26620.1	67.327	101	33	0	5	105	6	106	2.07e-47	150
MsaG036316	AT2G30130.1	52.727	110	52	0	3	112	7	116	6.15e-39	130
MsaG036316	AT1G31320.1	53.043	115	53	1	3	116	12	126	1.68e-36	124
MsaG036316	AT2G30340.1	50.459	109	54	0	2	110	50	158	1.07e-35	124
MsaG036316	AT2G30340.2	50.459	109	54	0	2	110	51	159	1.12e-35	124
MsaG036316	AT1G07900.1	43.307	127	67	1	1	127	30	151	1.71e-35	122
MsaG036316	AT5G63090.4	47.009	117	62	0	3	119	10	126	4.84e-35	120
MsaG036316	AT5G63090.3	47.009	117	62	0	3	119	10	126	4.84e-35	120
MsaG036316	AT5G63090.2	47.009	117	62	0	3	119	10	126	4.84e-35	120

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Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATTAGGAGTTTGACT+AGG	0.647531	7:-31932205	None:intergenic
AACTCCTAATTGGTTCAATT+AGG	0.365498	7:+31932213	MsaT036316.1:CDS
AAGTCCTAATTGAACCAATT+AGG	0.385923	7:-31932217	None:intergenic
AATACATAGAATTTGCAGCT+TGG	0.550687	7:-31931937	None:intergenic
AATCTTTGAGGATCATTGGG+AGG	0.604113	7:-31931476	None:intergenic
ACAAAATGGAGCAGATTCAA+TGG	0.514503	7:+31932182	MsaT036316.1:CDS
AGCAAATCTTTGAGGATCAT+TGG	0.352548	7:-31931480	None:intergenic
AGGATTCAAGATCCTGTTTA+TGG	0.232394	7:+31931974	MsaT036316.1:CDS
ATCCCAACACATCCATAAAC+AGG	0.432009	7:-31931986	None:intergenic
ATCCTGTTTATGGATGTGTT+GGG	0.518295	7:+31931984	MsaT036316.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	31931103	31932234	31931103	ID=MsaG036316
Chr7	mRNA	31931103	31932234	31931103	ID=MsaT036316.1;Parent=MsaG036316
Chr7	exon	31931103	31931113	31931103	ID=MsaT036316.1.exon1;Parent=MsaT036316.1
Chr7	CDS	31931103	31931113	31931103	ID=cds.MsaT036316.1;Parent=MsaT036316.1
Chr7	exon	31931412	31931550	31931412	ID=MsaT036316.1.exon2;Parent=MsaT036316.1
Chr7	CDS	31931412	31931550	31931412	ID=cds.MsaT036316.1;Parent=MsaT036316.1
Chr7	exon	31931914	31932234	31931914	ID=MsaT036316.1.exon3;Parent=MsaT036316.1
Chr7	CDS	31931914	31932234	31931914	ID=cds.MsaT036316.1;Parent=MsaT036316.1

Gene Sequence

>MsaT036316.1

ATGGTGTCAATGTGTGCTGCTTGCAAGAGTCAAAGAAGAAGGTGTCCTCCTGATTGCATTTTCTCTCCATATTTCCCTCCCAATGATCCTCAAAGATTTGCTTCTGTTCACCGAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAATTGCCTCACTATGTACGACACCAAGCTGCAAATTCTATGTATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTATCTCAACAAATTCAAGATACAGAAGTTGAGTTGGCTAAAATCAAAACTCAGATTGCTTATCATAAACTCCAAAATCAACAATTTGAAGGTGAATCAAACTTCAATGTCTTGTCAACAATTGATGCTGAATCAAACTTAAGCTCTTTGCCACTACATAGTAACAAAATGGAGCAGATTCAATGGCCTAGTCAAACTCCTAATTGGTTCAATTAG

Protein sequence

>MsaT036316.1

MVSMCAACKSQRRRCPPDCIFSPYFPPNDPQRFASVHRIYGGSNVGKMLQQLPHYVRHQAANSMYLEAQCRIQDPVYGCVGIISKLSQQIQDTEVELAKIKTQIAYHKLQNQQFEGESNFNVLSTIDAESNLSSLPLHSNKMEQIQWPSQTPNWFN*