AlfalfaGEDB | MsaG036335

M. sativa ssp. caerulea / MsaG036335

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036335	XP_039684136.1	96.443	253	9	0	1	253	34	286	0.0	513

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036335	sp\|Q7ZZ00\|ZN511_DANRE	34.199	231	130	5	13	230	49	270	3.89e-36	132

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036335	tr\|A0A396H268\|A0A396H268_MEDTR	96.443	253	9	0	1	253	1	253	0.0	511

TFs/TRs:

Gene ID	Type	Classification
MsaG036335	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000033	MsaG036335	0.807682	7.625799e-50	1.231553e-47
MsaG000717	MsaG036335	0.873496	2.894415e-67	3.896268e-64
MsaG001026	MsaG036335	0.803311	6.234157e-49	9.088464e-47
MsaG001363	MsaG036335	0.810396	2.013181e-50	3.471435e-48
MsaG001544	MsaG036335	0.815731	1.378277e-51	2.714138e-49
MsaG001551	MsaG036335	0.813178	5.027829e-51	9.284676e-49
MsaG002379	MsaG036335	0.800244	2.638034e-48	3.586440e-46
MsaG002469	MsaG036335	0.828114	1.924325e-54	5.279281e-52
MsaG003420	MsaG036335	0.801101	1.767528e-48	2.449891e-46
MsaG003861	MsaG036335	0.834996	3.951069e-56	1.323366e-53
MsaG004006	MsaG036335	0.868977	8.850636e-66	9.827658e-63
MsaG003932	MsaG036335	0.826897	3.757441e-54	9.962415e-52
MsaG003936	MsaG036335	0.836636	1.525077e-56	5.365458e-54
MsaG004107	MsaG036335	0.837359	9.986883e-57	3.591439e-54
MsaG004452	MsaG036335	0.854027	3.116100e-61	1.944477e-58
MsaG004556	MsaG036335	0.839473	2.862051e-57	1.098999e-54
MsaG004717	MsaG036335	0.823229	2.737064e-53	6.561209e-51
MsaG005423	MsaG036335	0.819687	1.782689e-52	3.888278e-50
MsaG005526	MsaG036335	0.828914	1.235741e-54	3.467044e-52
MsaG005869	MsaG036335	0.833058	1.201433e-55	3.799150e-53
MsaG006030	MsaG036335	0.815895	1.267709e-51	2.506790e-49
MsaG005917	MsaG036335	0.819842	1.643911e-52	3.600353e-50
MsaG006500	MsaG036335	0.832918	1.301722e-55	4.099462e-53
MsaG007877	MsaG036335	0.800113	2.804297e-48	3.801231e-46
MsaG008221	MsaG036335	0.810106	2.323445e-50	3.978081e-48
MsaG008619	MsaG036335	0.851439	1.694679e-60	9.652263e-58
MsaG012549	MsaG036335	0.880839	8.347061e-70	1.567082e-66
MsaG012723	MsaG036335	0.812593	6.744710e-51	1.227480e-48
MsaG013271	MsaG036335	0.802670	8.443967e-49	1.213004e-46
MsaG013537	MsaG036335	0.829413	9.367766e-55	2.665838e-52
MsaG013839	MsaG036335	0.844973	1.016528e-58	4.654582e-56
MsaG014855	MsaG036335	0.846260	4.570289e-59	2.183349e-56
MsaG016209	MsaG036335	0.816717	8.319124e-52	1.679916e-49
MsaG016215	MsaG036335	0.822629	3.770737e-53	8.893702e-51
MsaG016327	MsaG036335	0.818567	3.197417e-52	6.772261e-50
MsaG016471	MsaG036335	0.854164	2.846364e-61	1.784890e-58
MsaG017009	MsaG036335	0.811255	1.315240e-50	2.315946e-48
MsaG017068	MsaG036335	0.862593	8.996074e-64	7.727388e-61
MsaG017081	MsaG036335	0.809557	3.045985e-50	5.146515e-48
MsaG017189	MsaG036335	0.803598	5.438557e-49	7.981417e-47
MsaG017699	MsaG036335	0.808622	4.820067e-50	7.962264e-48
MsaG017954	MsaG036335	0.830027	6.650967e-55	1.926370e-52
MsaG017983	MsaG036335	0.830661	4.661679e-55	1.374820e-52
MsaG018085	MsaG036335	0.825057	1.023206e-53	2.577960e-51
MsaG018169	MsaG036335	0.812294	7.833987e-51	1.415099e-48
MsaG018777	MsaG036335	0.805812	1.886019e-49	2.913912e-47
MsaG019223	MsaG036335	0.852791	7.028004e-61	4.197245e-58
MsaG019261	MsaG036335	0.808109	6.193931e-50	1.010626e-47
MsaG019285	MsaG036335	0.891784	6.412306e-74	2.075390e-70
MsaG019527	MsaG036335	0.840485	1.563318e-57	6.196487e-55
MsaG019936	MsaG036335	0.804808	3.053454e-49	4.608695e-47
MsaG020021	MsaG036335	0.831765	2.503363e-55	7.623984e-53
MsaG020233	MsaG036335	0.816057	1.167111e-51	2.317328e-49
MsaG020321	MsaG036335	0.811810	9.975709e-51	1.780686e-48
MsaG020382	MsaG036335	0.821678	6.248257e-53	1.436650e-50
MsaG020733	MsaG036335	0.844074	1.769871e-58	7.866596e-56
MsaG020812	MsaG036335	0.802584	8.793908e-49	1.260808e-46
MsaG022811	MsaG036335	0.850642	2.836615e-60	1.571823e-57
MsaG023188	MsaG036335	0.853869	3.459660e-61	2.146658e-58
MsaG023861	MsaG036335	0.808389	5.402075e-50	8.873549e-48
MsaG025143	MsaG036335	0.819855	1.633029e-52	3.577703e-50
MsaG026692	MsaG036335	0.801495	1.469160e-48	2.054610e-46
MsaG027170	MsaG036335	0.828537	1.523180e-54	4.228668e-52
MsaG027198	MsaG036335	0.815319	1.701331e-51	3.315434e-49
MsaG027207	MsaG036335	0.838385	5.456637e-57	2.025164e-54
MsaG027210	MsaG036335	0.848081	1.455169e-59	7.389467e-57
MsaG027291	MsaG036335	0.820858	9.640337e-53	2.168844e-50
MsaG027483	MsaG036335	0.836056	2.137405e-56	7.389685e-54
MsaG027828	MsaG036335	0.878131	7.542770e-69	1.248940e-65
MsaG027807	MsaG036335	0.802424	9.486397e-49	1.355095e-46
MsaG027963	MsaG036335	0.810673	1.755600e-50	3.047609e-48
MsaG027984	MsaG036335	0.804789	3.081161e-49	4.648468e-47
MsaG028028	MsaG036335	0.831662	2.653581e-55	8.057072e-53
MsaG028191	MsaG036335	0.834925	4.118432e-56	1.376427e-53
MsaG028211	MsaG036335	0.830466	5.202304e-55	1.525683e-52
MsaG028335	MsaG036335	0.847249	2.459459e-59	1.214494e-56
MsaG028420	MsaG036335	0.833245	1.080247e-55	3.434834e-53
MsaG028531	MsaG036335	0.814973	2.028873e-51	3.919349e-49
MsaG029141	MsaG036335	0.827773	2.322725e-54	6.311451e-52
MsaG029546	MsaG036335	0.853676	3.928796e-61	2.420825e-58
MsaG029953	MsaG036335	0.809945	2.516217e-50	4.291206e-48
MsaG031129	MsaG036335	0.906789	2.422364e-80	1.861901e-76
MsaG032115	MsaG036335	0.856741	5.092721e-62	3.505343e-59
MsaG032848	MsaG036335	0.863413	5.034884e-64	4.466451e-61
MsaG034108	MsaG036335	0.840224	1.828763e-57	7.189156e-55
MsaG034836	MsaG036335	0.811847	9.795343e-51	1.750062e-48
MsaG036065	MsaG036335	0.823192	2.791973e-53	6.686114e-51
MsaG036335	MsaG040504	0.845192	8.878976e-59	4.094096e-56
MsaG036335	MsaG040577	0.845490	7.380707e-59	3.436880e-56
MsaG036335	MsaG040600	0.801698	1.335792e-48	1.876718e-46
MsaG036335	MsaG040714	0.840134	1.929786e-57	7.564986e-55
MsaG036335	MsaG041754	0.850118	3.973869e-60	2.162158e-57
MsaG036335	MsaG041800	0.808877	4.255201e-50	7.072582e-48
MsaG036335	MsaG042126	0.800536	2.302575e-48	3.151145e-46
MsaG036335	MsaG043725	0.824710	1.234685e-53	3.081238e-51
MsaG036335	MsaG044104	0.846958	2.952314e-59	1.443637e-56
MsaG036335	MsaG044200	0.824436	1.431104e-53	3.544966e-51
MsaG036335	MsaG044997	0.838063	6.600440e-57	2.425530e-54
MsaG036335	MsaG045819	0.836403	1.746622e-56	6.102427e-54
MsaG036335	MsaG045969	0.823581	2.266718e-53	5.485886e-51
MsaG036335	MsaG046173	0.815367	1.659942e-51	3.238779e-49
MsaG036335	MsaG046381	0.800658	2.174238e-48	2.983840e-46
MsaG036335	MsaG046522	0.851543	1.584306e-60	9.055937e-58
MsaG036335	MsaG046501	0.826924	3.701643e-54	9.822124e-52
MsaG036335	MsaG046589	0.892313	3.955836e-74	1.317490e-70
MsaG036335	MsaG046902	0.848569	1.068095e-59	5.513240e-57
MsaG036335	MsaG046939	0.860725	3.328449e-63	2.660776e-60
MsaG036335	MsaG046927	0.815246	1.765390e-51	3.434043e-49
MsaG036335	MsaG002654	0.848793	9.264706e-60	4.818525e-57
MsaG036335	MsaG011183	0.821683	6.233444e-53	1.433423e-50
MsaG036335	MsaG012744	0.815919	1.252339e-51	2.477911e-49
MsaG036335	MsaG014993	0.819186	2.316289e-52	4.986462e-50
MsaG036335	MsaG013496	0.867595	2.457259e-65	2.578257e-62
MsaG036335	MsaG018912	0.825846	6.668319e-54	1.717133e-51
MsaG036335	MsaG019847	0.844078	1.765687e-58	7.849197e-56
MsaG036335	MsaG029390	0.879914	1.780516e-69	3.200181e-66
MsaG036335	MsaG026803	0.837120	1.149039e-56	4.102186e-54
MsaG036335	MsaG028079	0.818090	4.095351e-52	8.567878e-50
MsaG036335	MsaG033602	0.870287	3.329502e-66	3.904987e-63
MsaG036335	MsaG032886	0.831174	3.493653e-55	1.045685e-52
MsaG036335	MsaG034655	0.829225	1.039902e-54	2.943187e-52
MsaG036335	MsaG030566	0.801932	1.196331e-48	1.689783e-46
MsaG036335	MsaG036286	0.833151	1.139590e-55	3.613724e-53
MsaG036335	MsaG036043	0.859792	6.352598e-63	4.900396e-60
MsaG036335	MsaG037161	0.824289	1.548996e-53	3.821665e-51
MsaG036335	MsaG037827	0.807243	9.439766e-50	1.508557e-47
MsaG036335	MsaG037051	0.800737	2.096283e-48	2.881872e-46
MsaG036335	MsaG037842	0.827847	2.230198e-54	6.072668e-52
MsaG036335	MsaG036758	0.804098	4.286974e-49	6.365054e-47
MsaG036335	MsaG036415	0.802180	1.064478e-48	1.512043e-46
MsaG036335	MsaG041442	0.836823	1.367120e-56	4.837065e-54
MsaG036335	MsaG044531	0.847884	1.647654e-59	8.312353e-57
MsaG036335	MsaG043142	0.803074	6.976112e-49	1.011479e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036335	MtrunA17_Chr7g0225371	96.443	253	9	0	1	253	1	253	0.0	511
MsaG036335	MtrunA17_Chr7g0225251	96.316	190	7	0	64	253	3	192	5.82e-136	380
MsaG036335	MtrunA17_Chr7g0225341	78.378	111	22	2	136	245	8	117	1.19e-52	166

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036335	AT5G14140.1	63.158	247	82	4	11	249	14	259	4.10e-111	320

Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCTCATGATTCTTTCTTTC+AGG	0.183557	7:+32222723	MsaT036335.1:CDS
GAAGTCTTCTGTCCCATTGC+TGG	0.271752	7:+32222574	MsaT036335.1:CDS
CAAAACGGAAAATTTGAATC+TGG	0.300941	7:-32221371	None:intergenic
GGGTTGGAACTTACGTGAAA+TGG	0.341316	7:-32221399	None:intergenic
TGCTGGGTGTGGAGCGCGTT+TGG	0.354156	7:+32222591	MsaT036335.1:CDS
TTTATCCTGTGTTTCTTTGA+AGG	0.386367	7:-32223802	None:intergenic
TTCTGTCCCATTGCTGGGTG+TGG	0.397837	7:+32222580	MsaT036335.1:CDS
ATGACATGCCTTTGGTGTTA+CGG	0.399250	7:-32223966	None:intergenic
ACGAGAACTTCTTGTCAAAC+AGG	0.415459	7:+32221454	MsaT036335.1:CDS
TCTCAAAAGGAGGATACTTC+AGG	0.418130	7:+32223844	MsaT036335.1:CDS
TGACAAGAAGTTCTCGTTCA+AGG	0.428214	7:-32221448	None:intergenic
CGTGAAATGGGTTTCCAAAA+CGG	0.438517	7:-32221386	None:intergenic
CGCGCTCCACACCCAGCAAT+GGG	0.438523	7:-32222586	None:intergenic
ACTCCTTCCTCTATCAGCTT+TGG	0.443914	7:+32223940	MsaT036335.1:CDS
GGTTGGAACTTACGTGAAAT+GGG	0.448158	7:-32221398	None:intergenic
GACTCTAGAACACACAGAAC+AGG	0.456459	7:-32222662	None:intergenic
AAGTCTTCTGTCCCATTGCT+GGG	0.459510	7:+32222575	MsaT036335.1:CDS
GGAGGATACTTCAGGAATGA+TGG	0.477569	7:+32223852	MsaT036335.1:CDS
AGGGACAAATGACATGCCTT+TGG	0.478422	7:-32223974	None:intergenic
AAAGAAAGAATCATGAGCTT+CGG	0.485050	7:-32222719	None:intergenic
GATAGCGAAGAAAGGTGAAT+CGG	0.497649	7:-32221420	None:intergenic
AATTCAAAAGCTACAAAAGT+AGG	0.497972	7:+32223716	MsaT036335.1:CDS
CGAGCTGTTCAGCGTGGGAA+AGG	0.500378	7:+32223997	MsaT036335.1:CDS
GTAAGCTTATTTCTTAGTAA+CGG	0.507580	7:-32224037	None:intergenic
ACAAGAGAAGGAACAGTTTG+AGG	0.507962	7:+32221609	MsaT036335.1:CDS
GATTCACCTTTCTTCGCTAT+CGG	0.511476	7:+32221422	MsaT036335.1:CDS
TTAATTTGAAAAGGTTGCGT+TGG	0.517594	7:+32221573	MsaT036335.1:intron
GATATAGTATGAATGCTTAG+TGG	0.520599	7:+32223678	MsaT036335.1:intron
ACGCGCTCCACACCCAGCAA+TGG	0.530230	7:-32222587	None:intergenic
TAGTATGAATGCTTAGTGGA+AGG	0.549245	7:+32223682	MsaT036335.1:intron
CGAAGAAAGGTGAATCGGGT+TGG	0.552955	7:-32221415	None:intergenic
ATTTGAATTAACACAAGAGA+AGG	0.553168	7:+32221597	MsaT036335.1:CDS
CTCTGCCTTCAAAGAAACAC+AGG	0.556458	7:+32223797	MsaT036335.1:CDS
ACGGCGACCAAAGCTGATAG+AGG	0.559633	7:-32223947	None:intergenic
TACTTCAGGAATGATGGAAG+TGG	0.560728	7:+32223858	MsaT036335.1:CDS
GGAAGTGGAAAATGCAGCTA+TGG	0.560741	7:+32223873	MsaT036335.1:CDS
TCCCTCGAGCTGTTCAGCGT+GGG	0.564627	7:+32223992	MsaT036335.1:CDS
ATAGCGAAGAAAGGTGAATC+GGG	0.565377	7:-32221419	None:intergenic
CGTGGGAAAGGATCTAACTC+TGG	0.568460	7:+32224009	MsaT036335.1:CDS
GTCCCTCGAGCTGTTCAGCG+TGG	0.579249	7:+32223991	MsaT036335.1:CDS
TTCCCACGCTGAACAGCTCG+AGG	0.579646	7:-32223994	None:intergenic
ACTTGATACAAGAGGATGGA+AGG	0.580239	7:+32221632	MsaT036335.1:CDS
AGGTTACCGATAGCGAAGAA+AGG	0.582602	7:-32221428	None:intergenic
GGTTGAACTAACGATGGAAG+TGG	0.593198	7:+32221337	None:intergenic
AGTATGAATGCTTAGTGGAA+GGG	0.595383	7:+32223683	MsaT036335.1:intron
GAATGCTTAGTGGAAGGGTG+CGG	0.598441	7:+32223688	MsaT036335.1:CDS
CGACCAAAGCTGATAGAGGA+AGG	0.601809	7:-32223943	None:intergenic
TATGCTGAGCAAACGTGATG+TGG	0.604052	7:-32222689	None:intergenic
TTTCAGGCAAAAGTTGCTCG+TGG	0.610110	7:+32222739	MsaT036335.1:CDS
GAGGACTTGATACAAGAGGA+TGG	0.612431	7:+32221628	MsaT036335.1:CDS
GTTTGAGGACTTGATACAAG+AGG	0.614127	7:+32221624	MsaT036335.1:CDS
TTTGGTCGCCGTAACACCAA+AGG	0.617378	7:+32223958	MsaT036335.1:CDS
ATGCTGAGCAAACGTGATGT+GGG	0.625974	7:-32222688	None:intergenic
AGTTGCTCGTGGCTATGACA+TGG	0.638718	7:+32222750	MsaT036335.1:CDS
TCCCACGCTGAACAGCTCGA+GGG	0.661255	7:-32223993	None:intergenic
AAAGCTGATAGAGGAAGGAG+TGG	0.665134	7:-32223938	None:intergenic
ATCTAGATACTGCTGAAACG+AGG	0.692577	7:-32223900	None:intergenic
TGCTGAGCAAACGTGATGTG+GGG	0.701816	7:-32222687	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	32221350	32224053	32221350	ID=MsaG036335
Chr7	mRNA	32221350	32224053	32221350	ID=MsaT036335.1;Parent=MsaG036335
Chr7	exon	32221350	32221475	32221350	ID=MsaT036335.1.exon1;Parent=MsaT036335.1
Chr7	CDS	32221350	32221475	32221350	ID=cds.MsaT036335.1;Parent=MsaT036335.1
Chr7	exon	32221586	32221653	32221586	ID=MsaT036335.1.exon2;Parent=MsaT036335.1
Chr7	CDS	32221586	32221653	32221586	ID=cds.MsaT036335.1;Parent=MsaT036335.1
Chr7	exon	32222573	32222771	32222573	ID=MsaT036335.1.exon3;Parent=MsaT036335.1
Chr7	CDS	32222573	32222771	32222573	ID=cds.MsaT036335.1;Parent=MsaT036335.1
Chr7	exon	32223685	32224053	32223685	ID=MsaT036335.1.exon4;Parent=MsaT036335.1
Chr7	CDS	32223685	32224053	32223685	ID=cds.MsaT036335.1;Parent=MsaT036335.1

Gene Sequence

>MsaT036335.1

ATGGAAGTGGAGAATCGAAATCCAGATTCAAATTTTCCGTTTTGGAAACCCATTTCACGTAAGTTCCAACCCGATTCACCTTTCTTCGCTATCGGTAACCTTGAACGAGAACTTCTTGTCAAACAGGTTGCGTTGGAATTTGAATTAACACAAGAGAAGGAACAGTTTGAGGACTTGATACAAGAGGATGGAAGGGAAGTCTTCTGTCCCATTGCTGGGTGTGGAGCGCGTTTGGCTTCAATTGAGAATTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCCACATCACGTTTGCTCAGCATACATGTATCCGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCTCGTGGCTATGACATGTATGAATGCTTAGTGGAAGGGTGCGGTTTGAAATTCAAAAGCTACAAAAGTAGGCAGCAGCATCTAGTTGACAAGCATAAATTCCCGACGTCATTCGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATAAAGTCTCAACGCAAAAAACCTTCTCAAAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCTATGGATGACCTCGTTTCAGCAGTATCTAGATTAAATACTTCAGACACCACTCCTTCCTCTATCAGCTTTGGTCGCCGTAACACCAAAGGCATGTCATTTGTCCCTCGAGCTGTTCAGCGTGGGAAAGGATCTAACTCTGGCTCATCCGTTACTAAGAAATAA

Protein sequence

>MsaT036335.1

MEVENRNPDSNFPFWKPISRKFQPDSPFFAIGNLERELLVKQVALEFELTQEKEQFEDLIQEDGREVFCPIAGCGARLASIENFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFPTSFEFFKKALPSKKHRIKSQRKKPSQKEDTSGMMEVENAAMDDLVSAVSRLNTSDTTPSSISFGRRNTKGMSFVPRAVQRGKGSNSGSSVTKK*