AlfalfaGEDB | MsaG036353

M. sativa ssp. caerulea / MsaG036353

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036353	GAU32754.1	68.421	114	33	2	1	112	758	870	1.45e-47	174

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036353	tr\|A0A2Z6MJF1\|A0A2Z6MJF1_TRISU	68.421	114	33	2	1	112	758	870	6.93e-48	174

TFs/TRs:

Gene ID	Type	Classification
MsaG036353	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000180	MsaG036353	0.805867	1.836822e-49	2.841584e-47
MsaG001279	MsaG036353	0.803138	6.767425e-49	9.826670e-47
MsaG004504	MsaG036353	0.807127	9.986558e-50	1.591605e-47
MsaG005329	MsaG036353	0.803362	6.083255e-49	8.879215e-47
MsaG006237	MsaG036353	0.832169	1.991719e-55	6.137147e-53
MsaG007122	MsaG036353	0.816429	9.646131e-52	1.933485e-49
MsaG008220	MsaG036353	0.803118	6.832652e-49	9.916803e-47
MsaG008324	MsaG036353	0.806990	1.067286e-49	1.695495e-47
MsaG011225	MsaG036353	0.800463	2.381989e-48	3.254480e-46
MsaG011314	MsaG036353	0.819329	2.150201e-52	4.646324e-50
MsaG012448	MsaG036353	0.804218	4.049036e-49	6.028382e-47
MsaG042510	MsaG036353	0.811862	9.721500e-51	1.737512e-48
MsaG045262	MsaG036353	0.819421	2.049129e-52	4.438495e-50
MsaG045392	MsaG036353	0.810232	2.183320e-50	3.749642e-48
MsaG045536	MsaG036353	0.807766	7.320922e-50	1.184701e-47
MsaG046498	MsaG036353	0.801327	1.589583e-48	2.214608e-46
MsaG014819	MsaG036353	0.809520	3.102891e-50	5.237931e-48
MsaG019592	MsaG036353	0.817761	4.856593e-52	1.007445e-49
MsaG032663	MsaG036353	0.808231	5.836747e-50	9.551356e-48
MsaG034613	MsaG036353	0.820817	9.848180e-53	2.213240e-50
MsaG033153	MsaG036353	0.812907	5.760042e-51	1.056504e-48
MsaG036665	MsaG036353	0.824647	1.276792e-53	3.180878e-51
MsaG037204	MsaG036353	0.809208	3.616257e-50	6.058394e-48
MsaG018134	MsaG036353	0.823757	2.062660e-53	5.015994e-51
MsaG026192	MsaG036353	0.805452	2.242582e-49	3.435740e-47
MsaG028416	MsaG036353	0.804950	2.852803e-49	4.320064e-47
MsaG028634	MsaG036353	0.801897	1.216196e-48	1.716502e-46
MsaG028665	MsaG036353	0.816880	7.648274e-52	1.550967e-49
MsaG029487	MsaG036353	0.824480	1.397789e-53	3.466518e-51
MsaG032064	MsaG036353	0.800787	2.047253e-48	2.817738e-46
MsaG034207	MsaG036353	0.804086	4.311462e-49	6.399638e-47
MsaG034633	MsaG036353	0.822526	3.983907e-53	9.370316e-51
MsaG036420	MsaG036353	0.820381	1.239340e-52	2.753398e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036353	MtrunA17_Chr7g0258861	45.946	111	57	3	4	112	7	116	2.18e-26	99.8
MsaG036353	MtrunA17_Chr2g0324011	43.243	111	61	2	4	113	7	116	8.40e-26	100
MsaG036353	MtrunA17_Chr7g0238821	42.718	103	57	2	11	112	1	102	3.34e-23	86.3
MsaG036353	MtrunA17_Chr5g0401121	43.810	105	55	2	6	107	55	158	3.45e-22	85.5
MsaG036353	MtrunA17_Chr3g0082121	42.056	107	58	2	4	107	40	145	1.47e-20	85.5
MsaG036353	MtrunA17_Chr6g0458391	33.333	105	69	1	4	107	222	326	1.38e-16	73.9
MsaG036353	MtrunA17_Chr4g0033611	32.407	108	71	2	7	113	76	182	1.37e-15	70.1
MsaG036353	MtrunA17_Chr2g0329421	33.333	102	66	2	7	107	27	127	3.48e-15	68.2
MsaG036353	MtrunA17_Chr2g0287061	36.036	111	55	3	7	115	29	125	2.64e-12	62.0
MsaG036353	MtrunA17_Chr1g0203721	33.673	98	64	1	9	105	65	162	2.16e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036353	AT3G59470.3	38.835	103	59	3	7	107	70	170	1.56e-16	72.8
MsaG036353	AT3G59470.1	38.835	103	59	3	7	107	70	170	1.56e-16	72.8
MsaG036353	AT3G59470.2	38.835	103	59	3	7	107	82	182	1.84e-16	72.8

Find 11 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCATGATGCTTGGAAGTTT+TGG	0.207739	7:+32524373	MsaT036353.1:CDS
TATGGTGGAAAAGTTGAATT+TGG	0.232263	7:+32524402	MsaT036353.1:CDS
ATACGTACACAAGAGCAAAA+AGG	0.438036	7:+32524437	MsaT036353.1:CDS
GGTACATAATGGAAGAAGAT+TGG	0.442153	7:+32524319	None:intergenic
TTAGTTCTAATCTCTTCTCT+TGG	0.443145	7:-32524543	None:intergenic
TTGATAACTTTCATGATGCT+TGG	0.451904	7:+32524364	MsaT036353.1:CDS
AGAGATTAGAACTAATTGTC+AGG	0.496548	7:+32524551	MsaT036353.1:CDS
TGGAAGAAGATTGGATGCCA+AGG	0.547111	7:+32524328	MsaT036353.1:CDS
ATTGTTGTGAGTGTAACATA+TGG	0.579020	7:-32524638	None:intergenic
ACACACAAAGATGCAAGAAG+TGG	0.597380	7:-32524469	None:intergenic
CACACAAAGATGCAAGAAGT+GGG	0.629246	7:-32524468	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	32524327	32524674	32524327	ID=MsaG036353
Chr7	mRNA	32524327	32524674	32524327	ID=MsaT036353.1;Parent=MsaG036353
Chr7	exon	32524327	32524674	32524327	ID=MsaT036353.1.exon1;Parent=MsaT036353.1
Chr7	CDS	32524327	32524674	32524327	ID=cds.MsaT036353.1;Parent=MsaT036353.1

Gene Sequence	>MsaT036353.1 ATGGAAGAAGATTGGATGCCAAGGATTGACATGATTTTTGATAACTTTCATGATGCTTGGAAGTTTTGGGTTGATTATGGTGGAAAAGTTGAATTTGGAGTGAGAATACAATACGTACACAAGAGCAAAAAGGATGGCTCACCCACTTCTTGCATCTTTGTGTGTTGCAAAGAAGTCTTGCAAAAACCAGACCAACGAGATTATAAAACAATCAAGCCAAGAGAAGAGATTAGAACTAATTGTCAGGCAAGAATCGTTCTTAAAAATATGGGTGAAAAATGGACGGTGCATGATTTTGTGCAAGAACATAACCATATGTTACACTCACAACAATCTCAAGAAGCTTAA
Protein sequence	>MsaT036353.1 MEEDWMPRIDMIFDNFHDAWKFWVDYGGKVEFGVRIQYVHKSKKDGSPTSCIFVCCKEVLQKPDQRDYKTIKPREEIRTNCQARIVLKNMGEKWTVHDFVQEHNHMLHSQQSQEA*