AlfalfaGEDB | MsaG036377

M. sativa ssp. caerulea / MsaG036377

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036377	XP_013448026.1	95.312	192	8	1	1	191	1	192	1.09e-131	377

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036377	sp\|Q9FMC2\|BZP43_ARATH	56.250	128	55	1	40	166	27	154	7.11e-39	134

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036377	tr\|A0A072TYW4\|A0A072TYW4_MEDTR	95.312	192	8	1	1	191	1	192	5.21e-132	377

TFs/TRs:

Gene ID	Type	Classification
MsaG036377	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000281	MsaG036377	0.834314	5.855522e-56	1.921576e-53
MsaG000288	MsaG036377	0.808901	4.203817e-50	6.991295e-48
MsaG000382	MsaG036377	0.866691	4.762266e-65	4.816525e-62
MsaG000405	MsaG036377	0.835884	2.363068e-56	8.127707e-54
MsaG000622	MsaG036377	0.827182	3.213340e-54	8.587966e-52
MsaG000683	MsaG036377	0.825140	9.780447e-54	2.469720e-51
MsaG001086	MsaG036377	0.843279	2.881386e-58	1.248342e-55
MsaG001200	MsaG036377	0.831650	2.672013e-55	8.110035e-53
MsaG001654	MsaG036377	0.825054	1.024828e-53	2.581816e-51
MsaG001672	MsaG036377	0.802087	1.111850e-48	1.576011e-46
MsaG002013	MsaG036377	0.819152	2.357765e-52	5.071140e-50
MsaG002866	MsaG036377	0.810480	1.932106e-50	3.338348e-48
MsaG002973	MsaG036377	0.822820	3.405048e-53	8.072975e-51
MsaG003187	MsaG036377	0.841634	7.829372e-58	3.218072e-55
MsaG003485	MsaG036377	0.814724	2.301572e-51	4.418174e-49
MsaG004105	MsaG036377	0.813077	5.289182e-51	9.742779e-49
MsaG004204	MsaG036377	0.819896	1.597932e-52	3.504725e-50
MsaG004301	MsaG036377	0.802888	7.617408e-49	1.099720e-46
MsaG004504	MsaG036377	0.808769	4.485898e-50	7.436686e-48
MsaG005000	MsaG036377	0.817794	4.774967e-52	9.913528e-50
MsaG005018	MsaG036377	0.821452	7.044385e-53	1.609979e-50
MsaG005119	MsaG036377	0.810826	1.627331e-50	2.835569e-48
MsaG005373	MsaG036377	0.836354	1.797453e-56	6.270597e-54
MsaG005401	MsaG036377	0.808205	5.910416e-50	9.665954e-48
MsaG005442	MsaG036377	0.823606	2.236089e-53	5.415664e-51
MsaG005443	MsaG036377	0.824547	1.348136e-53	3.349586e-51
MsaG005444	MsaG036377	0.828346	1.693166e-54	4.675511e-52
MsaG005506	MsaG036377	0.805393	2.306965e-49	3.529548e-47
MsaG005864	MsaG036377	0.836874	1.326355e-56	4.700118e-54
MsaG006037	MsaG036377	0.805841	1.860133e-49	2.875894e-47
MsaG006235	MsaG036377	0.835120	3.678229e-56	1.236506e-53
MsaG006237	MsaG036377	0.845473	7.456745e-59	3.470389e-56
MsaG006518	MsaG036377	0.818170	3.929947e-52	8.238852e-50
MsaG007287	MsaG036377	0.838999	3.792942e-57	1.435092e-54
MsaG007400	MsaG036377	0.814438	2.660760e-51	5.071353e-49
MsaG007798	MsaG036377	0.815751	1.364476e-51	2.688240e-49
MsaG008324	MsaG036377	0.831073	3.698735e-55	1.103846e-52
MsaG008552	MsaG036377	0.846277	4.520184e-59	2.160676e-56
MsaG009138	MsaG036377	0.823469	2.406762e-53	5.807008e-51
MsaG009390	MsaG036377	0.829872	7.250355e-55	2.090749e-52
MsaG009501	MsaG036377	0.814390	2.726297e-51	5.189976e-49
MsaG009504	MsaG036377	0.819015	2.532292e-52	5.426881e-50
MsaG009701	MsaG036377	0.824778	1.189648e-53	2.974499e-51
MsaG010816	MsaG036377	0.826663	4.270933e-54	1.125036e-51
MsaG011314	MsaG036377	0.805552	2.137357e-49	3.282107e-47
MsaG011357	MsaG036377	0.813843	3.595863e-51	6.752100e-49
MsaG011806	MsaG036377	0.822484	4.072942e-53	9.569059e-51
MsaG012138	MsaG036377	0.804141	4.200016e-49	6.241963e-47
MsaG012139	MsaG036377	0.813342	4.629399e-51	8.583843e-49
MsaG012140	MsaG036377	0.832682	1.488397e-55	4.654825e-53
MsaG012187	MsaG036377	0.818065	4.150350e-52	8.677067e-50
MsaG013325	MsaG036377	0.862565	9.178751e-64	7.875407e-61
MsaG013621	MsaG036377	0.802657	8.497613e-49	1.220344e-46
MsaG013962	MsaG036377	0.845966	5.489956e-59	2.597101e-56
MsaG014184	MsaG036377	0.801310	1.602268e-48	2.231383e-46
MsaG014263	MsaG036377	0.825559	7.796206e-54	1.991548e-51
MsaG014810	MsaG036377	0.812597	6.730886e-51	1.225074e-48
MsaG015176	MsaG036377	0.811467	1.183646e-50	2.095112e-48
MsaG015216	MsaG036377	0.843829	2.057550e-58	9.072636e-56
MsaG015202	MsaG036377	0.871351	1.492164e-66	1.831091e-63
MsaG015311	MsaG036377	0.843696	2.232854e-58	9.804593e-56
MsaG016544	MsaG036377	0.827575	2.590397e-54	6.999879e-52
MsaG016568	MsaG036377	0.824210	1.616532e-53	3.979572e-51
MsaG016651	MsaG036377	0.810314	2.097468e-50	3.609399e-48
MsaG016674	MsaG036377	0.808358	5.483590e-50	9.000849e-48
MsaG016821	MsaG036377	0.804113	4.257069e-49	6.322751e-47
MsaG017013	MsaG036377	0.843923	1.941677e-58	8.587889e-56
MsaG017269	MsaG036377	0.812097	8.643145e-51	1.553673e-48
MsaG018111	MsaG036377	0.811756	1.024875e-50	1.826950e-48
MsaG018123	MsaG036377	0.837693	8.207843e-57	2.981950e-54
MsaG018134	MsaG036377	0.807775	7.288125e-50	1.179666e-47
MsaG018322	MsaG036377	0.833395	9.914622e-56	3.166348e-53
MsaG018519	MsaG036377	0.839953	2.149222e-57	8.377880e-55
MsaG018909	MsaG036377	0.800422	2.427872e-48	3.314120e-46
MsaG019235	MsaG036377	0.806235	1.537962e-49	2.400108e-47
MsaG019361	MsaG036377	0.846942	2.982349e-59	1.457539e-56
MsaG020029	MsaG036377	0.867036	3.701633e-65	3.796629e-62
MsaG020106	MsaG036377	0.804663	3.273068e-49	4.923425e-47
MsaG020290	MsaG036377	0.801902	1.213054e-48	1.712292e-46
MsaG020488	MsaG036377	0.804437	3.647514e-49	5.457996e-47
MsaG020875	MsaG036377	0.801242	1.654117e-48	2.300028e-46
MsaG021286	MsaG036377	0.853950	3.280379e-61	2.041343e-58
MsaG021553	MsaG036377	0.813573	4.119938e-51	7.683902e-49
MsaG022370	MsaG036377	0.812545	6.909367e-51	1.255945e-48
MsaG023205	MsaG036377	0.812734	6.284501e-51	1.147713e-48
MsaG023271	MsaG036377	0.812243	8.034030e-51	1.449402e-48
MsaG023761	MsaG036377	0.834320	5.833702e-56	1.914807e-53
MsaG023762	MsaG036377	0.823150	2.854526e-53	6.828077e-51
MsaG025148	MsaG036377	0.815884	1.275101e-51	2.520668e-49
MsaG025574	MsaG036377	0.823280	2.663149e-53	6.393086e-51
MsaG025575	MsaG036377	0.844428	1.423861e-58	6.402374e-56
MsaG026261	MsaG036377	0.829489	8.979676e-55	2.561071e-52
MsaG026262	MsaG036377	0.806014	1.711463e-49	2.656728e-47
MsaG026721	MsaG036377	0.813631	4.002501e-51	7.475510e-49
MsaG026714	MsaG036377	0.832904	1.311830e-55	4.129557e-53
MsaG026863	MsaG036377	0.842971	3.477384e-58	1.491781e-55
MsaG027653	MsaG036377	0.836204	1.961212e-56	6.810914e-54
MsaG027933	MsaG036377	0.847780	1.759731e-59	8.846571e-57
MsaG028373	MsaG036377	0.809187	3.653165e-50	6.117265e-48
MsaG028485	MsaG036377	0.824207	1.618994e-53	3.985354e-51
MsaG028501	MsaG036377	0.805076	2.685486e-49	4.078589e-47
MsaG028716	MsaG036377	0.818802	2.830556e-52	6.032011e-50
MsaG028758	MsaG036377	0.832657	1.510177e-55	4.719431e-53
MsaG028804	MsaG036377	0.818400	3.487932e-52	7.355527e-50
MsaG030083	MsaG036377	0.856404	6.389454e-62	4.344519e-59
MsaG030084	MsaG036377	0.846559	3.790556e-59	1.828872e-56
MsaG030291	MsaG036377	0.809311	3.438454e-50	5.774685e-48
MsaG030313	MsaG036377	0.810502	1.911202e-50	3.303970e-48
MsaG030401	MsaG036377	0.818007	4.275524e-52	8.926034e-50
MsaG030402	MsaG036377	0.807385	8.810859e-50	1.412863e-47
MsaG030634	MsaG036377	0.800005	2.948936e-48	3.987759e-46
MsaG031288	MsaG036377	0.809779	2.730389e-50	4.638036e-48
MsaG031424	MsaG036377	0.809016	3.973024e-50	6.625838e-48
MsaG032062	MsaG036377	0.802988	7.266075e-49	1.051430e-46
MsaG032068	MsaG036377	0.807621	7.855924e-50	1.266832e-47
MsaG032786	MsaG036377	0.805081	2.679211e-49	4.069508e-47
MsaG033022	MsaG036377	0.803997	4.499484e-49	6.664640e-47
MsaG034079	MsaG036377	0.815565	1.500784e-51	2.942866e-49
MsaG034207	MsaG036377	0.827573	2.593209e-54	7.007091e-52
MsaG034827	MsaG036377	0.837789	7.754243e-57	2.825610e-54
MsaG034828	MsaG036377	0.861260	2.292862e-63	1.870300e-60
MsaG034829	MsaG036377	0.828793	1.321687e-54	3.695484e-52
MsaG034842	MsaG036377	0.835670	2.675175e-56	9.142330e-54
MsaG035054	MsaG036377	0.807599	7.939976e-50	1.279715e-47
MsaG035935	MsaG036377	0.871468	1.365227e-66	1.683760e-63
MsaG036377	MsaG037009	0.855530	1.148606e-61	7.564497e-59
MsaG036377	MsaG040026	0.800047	2.892084e-48	3.914411e-46
MsaG036377	MsaG040649	0.847163	2.595932e-59	1.278186e-56
MsaG036377	MsaG040669	0.817630	5.196064e-52	1.074201e-49
MsaG036377	MsaG041737	0.808224	5.854492e-50	9.578908e-48
MsaG036377	MsaG041901	0.806084	1.653883e-49	2.571737e-47
MsaG036377	MsaG041903	0.811269	1.305789e-50	2.300138e-48
MsaG036377	MsaG041904	0.826967	3.616996e-54	9.608736e-52
MsaG036377	MsaG042382	0.803453	5.825849e-49	8.521235e-47
MsaG036377	MsaG042378	0.809273	3.502563e-50	5.877122e-48
MsaG036377	MsaG043227	0.837326	1.017981e-56	3.657115e-54
MsaG036377	MsaG044218	0.812729	6.299781e-51	1.150368e-48
MsaG036377	MsaG044384	0.826125	5.729634e-54	1.486915e-51
MsaG036377	MsaG044386	0.850023	4.222928e-60	2.290437e-57
MsaG036377	MsaG044387	0.830227	5.947865e-55	1.732541e-52
MsaG036377	MsaG044547	0.864579	2.190738e-64	2.035232e-61
MsaG036377	MsaG044885	0.862384	1.042441e-63	8.880303e-61
MsaG036377	MsaG044919	0.852791	7.027983e-61	4.197236e-58
MsaG036377	MsaG045078	0.817965	4.369281e-52	9.111612e-50
MsaG036377	MsaG045225	0.811806	9.996519e-51	1.784217e-48
MsaG036377	MsaG045403	0.861279	2.262676e-63	1.847021e-60
MsaG036377	MsaG045404	0.810566	1.851519e-50	3.205785e-48
MsaG036377	MsaG045973	0.833372	1.004253e-55	3.205046e-53
MsaG036377	MsaG046053	0.819340	2.138016e-52	4.621394e-50
MsaG036377	MsaG046226	0.838609	4.779859e-57	1.786586e-54
MsaG036377	MsaG046862	0.819638	1.829206e-52	3.984508e-50
MsaG036377	MsaG047014	0.808207	5.905725e-50	9.658654e-48
MsaG036377	MsaG002437	0.828385	1.656576e-54	4.579548e-52
MsaG036377	MsaG000837	0.817258	6.297887e-52	1.289671e-49
MsaG036377	MsaG007366	0.802032	1.141048e-48	1.615339e-46
MsaG036377	MsaG009207	0.831871	2.358699e-55	7.205418e-53
MsaG036377	MsaG007674	0.828695	1.395948e-54	3.892486e-52
MsaG036377	MsaG013401	0.813962	3.386812e-51	6.378429e-49
MsaG036377	MsaG014449	0.819955	1.549768e-52	3.404512e-50
MsaG036377	MsaG013066	0.839848	2.288310e-57	8.891032e-55
MsaG036377	MsaG014180	0.820137	1.408530e-52	3.109260e-50
MsaG036377	MsaG014275	0.821395	7.258398e-53	1.656421e-50
MsaG036377	MsaG020426	0.815381	1.648070e-51	3.216779e-49
MsaG036377	MsaG018815	0.841869	6.792217e-58	2.812943e-55
MsaG036377	MsaG023315	0.805882	1.823610e-49	2.822161e-47
MsaG036377	MsaG026656	0.827860	2.213634e-54	6.029760e-52
MsaG036377	MsaG026431	0.800662	2.170441e-48	2.978869e-46
MsaG036377	MsaG026536	0.834807	4.407379e-56	1.467822e-53
MsaG036377	MsaG032410	0.863401	5.077361e-64	4.501819e-61
MsaG036377	MsaG032342	0.814396	2.719187e-51	5.177114e-49
MsaG036377	MsaG033325	0.838989	3.817008e-57	1.443720e-54
MsaG036377	MsaG030214	0.812158	8.383912e-51	1.509331e-48
MsaG036377	MsaG036873	0.806377	1.436027e-49	2.248576e-47
MsaG036377	MsaG037156	0.826913	3.723794e-54	9.877927e-52
MsaG036377	MsaG036665	0.803984	4.526768e-49	6.703019e-47
MsaG036377	MsaG039736	0.803702	5.176183e-49	7.614909e-47
MsaG036377	MsaG039603	0.816585	8.903095e-52	1.791758e-49
MsaG036377	MsaG043458	0.869496	6.014710e-66	6.824120e-63

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036377	MtrunA17_Chr7g0225661	95.312	192	8	1	1	191	1	192	1.00e-135	377
MsaG036377	MtrunA17_Chr8g0341311	90.052	191	9	1	1	191	1	181	2.90e-125	350
MsaG036377	MtrunA17_Chr6g0456061	52.047	171	53	3	8	161	9	167	1.28e-46	152
MsaG036377	MtrunA17_Chr7g0220571	62.406	133	46	3	57	187	60	190	5.10e-43	142
MsaG036377	MtrunA17_Chr4g0035414	52.055	73	35	0	80	152	26	98	7.42e-19	79.3
MsaG036377	MtrunA17_Chr1g0155551	42.553	94	53	1	61	154	8	100	3.62e-17	74.7
MsaG036377	MtrunA17_Chr4g0054291	35.252	139	73	3	30	156	14	147	1.86e-16	73.2
MsaG036377	MtrunA17_Chr3g0144941	49.315	73	37	0	80	152	26	98	4.28e-16	72.0
MsaG036377	MtrunA17_Chr5g0400901	42.708	96	48	1	81	169	58	153	1.68e-15	70.5
MsaG036377	MtrunA17_Chr8g0378901	35.922	103	65	1	50	152	2	103	3.55e-13	64.3
MsaG036377	MtrunA17_Chr1g0194681	41.489	94	50	3	59	152	7	95	7.58e-13	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036377	AT3G30530.1	68.966	116	34	1	62	175	57	172	2.45e-50	160
MsaG036377	AT1G13600.1	49.451	182	72	7	2	171	4	177	1.58e-42	141
MsaG036377	AT5G38800.1	56.250	128	55	1	40	166	27	154	7.22e-40	134
MsaG036377	AT5G15830.1	58.824	119	41	3	61	172	52	169	3.82e-37	127
MsaG036377	AT2G04038.1	60.360	111	40	1	65	171	55	165	1.59e-36	125
MsaG036377	AT1G68880.1	46.154	104	51	1	58	161	26	124	7.71e-24	92.0
MsaG036377	AT1G75390.1	46.809	94	45	1	64	152	16	109	4.04e-17	75.5
MsaG036377	AT5G60830.1	48.718	78	40	0	82	159	69	146	7.10e-17	75.5
MsaG036377	AT1G75390.2	45.055	91	46	1	62	148	15	105	1.27e-15	70.1
MsaG036377	AT2G18160.1	47.222	72	38	0	81	152	28	99	3.03e-15	70.5
MsaG036377	AT3G62420.1	37.624	101	59	1	80	176	21	121	1.76e-13	65.1
MsaG036377	AT4G37730.1	40.385	104	62	0	56	159	169	272	4.82e-13	66.6
MsaG036377	AT4G34590.1	43.243	74	42	0	79	152	22	95	3.24e-12	62.0

Find 23 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCTAAAAGATTATTTAGA+TGG	0.288426	7:-32995471	None:intergenic
ATGGTAGCTGACATGCAAAT+TGG	0.415880	7:+32995829	MsaT036377.1:CDS
GCTGATGGATAGTGGAAGTT+TGG	0.435401	7:-32995499	None:intergenic
CATGGCCTGCTGATGGATAG+TGG	0.496231	7:-32995507	None:intergenic
GAGAATCAGCTAGGAGATCA+AGG	0.496394	7:+32995644	MsaT036377.1:CDS
TTGCTACTTAAACATGAAAG+TGG	0.512553	7:-32995541	None:intergenic
CATAAATCTTCCATGTTGCA+AGG	0.518307	7:-32995862	None:intergenic
AACTTCCACTATCCATCAGC+AGG	0.521479	7:+32995502	MsaT036377.1:CDS
CTCTATTTGATATCATTCGC+CGG	0.533745	7:-32995624	None:intergenic
TAATTTGAAATTTCATTCTG+TGG	0.544927	7:-32995448	None:intergenic
CAGCTAGGAGATCAAGGATG+AGG	0.553553	7:+32995650	MsaT036377.1:CDS
AATTGATCATGGCCTGCTGA+TGG	0.565009	7:-32995514	None:intergenic
TTGTGTTGAGATGTGTTGCA+TGG	0.567617	7:-32995892	None:intergenic
AAAGTGGAGCAAATTGATCA+TGG	0.575829	7:-32995525	None:intergenic
CATGGTTTAGTTTATCAACA+AGG	0.578514	7:-32995735	None:intergenic
TTAACTCCTCTCATCTCACT+AGG	0.608373	7:-32995373	None:intergenic
TATCAAATAGAGAATCAGCT+AGG	0.626195	7:+32995635	MsaT036377.1:CDS
AGTTCAACATCATCGACGAA+AGG	0.627624	7:+32995596	MsaT036377.1:CDS
TCTCATCTCACTAGGAACCA+TGG	0.643297	7:-32995365	None:intergenic
TCATCGACGAAAGGAAGCAC+CGG	0.644213	7:+32995605	MsaT036377.1:CDS
TGTCATGTGACTCAGACACA+TGG	0.644643	7:-32995753	None:intergenic
GGATGAACTTTGGTCACAAG+TGG	0.651183	7:+32995687	MsaT036377.1:CDS
ATGGTTCCTAGTGAGATGAG+AGG	0.653972	7:+32995367	MsaT036377.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	32995367	32995942	32995367	ID=MsaG036377
Chr7	mRNA	32995367	32995942	32995367	ID=MsaT036377.1;Parent=MsaG036377
Chr7	exon	32995367	32995942	32995367	ID=MsaT036377.1.exon1;Parent=MsaT036377.1
Chr7	CDS	32995367	32995942	32995367	ID=cds.MsaT036377.1;Parent=MsaT036377.1

Gene Sequence

>MsaT036377.1

ATGGTTCCTAGTGAGATGAGAGGAGTTAATTATCTAACTCCTCTTGAAAATTCATTCCAAGTTCAACAAAACTTTGTCTTGCCACAGAATGAAATTTCAAATTACCATCTAAATAATCTTTTAGGAAGCTTGCCAAACTTCCACTATCCATCAGCAGGCCATGATCAATTTGCTCCACTTTCATGTTTAAGTAGCAACTCAACTACTTCTGATGAAGCAGATGAACTTCAGTTCAACATCATCGACGAAAGGAAGCACCGGCGAATGATATCAAATAGAGAATCAGCTAGGAGATCAAGGATGAGGAAACAAAAACACTTGGATGAACTTTGGTCACAAGTGGTGAGACTCAGAACTGAAAATCACAACCTTGTTGATAAACTAAACCATGTGTCTGAGTCACATGACAAAGTTGTTCAAGAGAATACACGTCTTAAAGAAGAAACTTTTGATCTTCGTCAAATGGTAGCTGACATGCAAATTGGTAACTCTTTTCCTTGCAACATGGAAGATTTATGTGAAATTCCATGCAACACATCTCAACACAAAGATGATTCCTCTAAAATTCATGATTGA

Protein sequence

>MsaT036377.1

MVPSEMRGVNYLTPLENSFQVQQNFVLPQNEISNYHLNNLLGSLPNFHYPSAGHDQFAPLSCLSSNSTTSDEADELQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLVDKLNHVSESHDKVVQENTRLKEETFDLRQMVADMQIGNSFPCNMEDLCEIPCNTSQHKDDSSKIHD*