AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036460 MtrunA17_Chr7g0228531 37.963 216 64 5 70 221 222 431 9.37e-38 135
MsaG036460 MtrunA17_Chr7g0228481 36.574 216 67 5 70 221 222 431 2.08e-33 124
MsaG036460 MtrunA17_Chr3g0117511 52.427 103 48 1 70 172 185 286 9.37e-33 122
MsaG036460 MtrunA17_Chr4g0058991 49.515 103 51 1 70 172 211 312 2.66e-31 119
MsaG036460 MtrunA17_Chr5g0429661 48.544 103 52 1 70 172 124 225 1.94e-30 115
MsaG036460 MtrunA17_Chr1g0177901 51.042 96 39 2 91 186 17 104 8.88e-29 107
MsaG036460 MtrunA17_Chr7g0233061 46.400 125 49 3 58 167 155 276 7.30e-28 108
MsaG036460 MtrunA17_Chr7g0228401 39.583 144 55 2 79 191 290 432 7.08e-27 107
MsaG036460 MtrunA17_Chr1g0157731 45.000 100 52 2 67 164 88 186 8.40e-24 99.0
MsaG036460 MtrunA17_Chr1g0157731 34.409 93 61 0 70 162 41 133 2.06e-15 74.7
MsaG036460 MtrunA17_Chr7g0238631 47.000 100 50 2 67 164 110 208 9.04e-24 98.6
MsaG036460 MtrunA17_Chr3g0139671 43.617 94 52 1 71 164 88 180 2.90e-22 94.7
MsaG036460 MtrunA17_Chr5g0416341 39.161 143 77 4 61 195 16 156 3.31e-22 94.0
MsaG036460 MtrunA17_Chr5g0397841 45.161 93 50 1 71 163 113 204 6.32e-22 93.2
MsaG036460 MtrunA17_Chr6g0460661 40.566 106 62 1 64 169 12 116 7.99e-21 85.5
MsaG036460 MtrunA17_Chr4g0008551 39.000 100 60 1 71 170 41 139 1.03e-20 89.0
MsaG036460 MtrunA17_Chr8g0362231 42.157 102 58 1 69 170 23 123 1.73e-20 89.0
MsaG036460 MtrunA17_Chr3g0133601 34.400 125 79 2 62 184 29 152 2.98e-20 85.5
MsaG036460 MtrunA17_Chr5g0417621 38.261 115 69 2 52 165 117 230 1.05e-18 84.0
MsaG036460 MtrunA17_Chr4g0042501 41.053 95 55 1 71 165 108 201 1.13e-18 83.6
MsaG036460 MtrunA17_Chr7g0274581 43.750 96 48 3 71 163 17 109 1.14e-18 80.9
MsaG036460 MtrunA17_Chr8g0342541 37.500 104 63 2 62 164 8 110 6.66e-18 80.9
MsaG036460 MtrunA17_Chr2g0309911 38.947 95 56 2 71 164 16 109 9.20e-18 80.1
MsaG036460 MtrunA17_Chr4g0055981 34.328 134 80 5 33 164 26 153 9.90e-18 79.0
MsaG036460 MtrunA17_Chr5g0441131 40.000 100 57 2 70 167 13 111 1.06e-17 77.8
MsaG036460 MtrunA17_Chr1g0193801 30.405 148 97 4 71 216 17 160 1.91e-17 80.1
MsaG036460 MtrunA17_Chr4g0032401 37.013 154 72 8 71 213 22 161 2.27e-17 79.3
MsaG036460 MtrunA17_Chr1g0211161 37.895 95 57 2 71 164 18 111 2.34e-17 77.8
MsaG036460 MtrunA17_Chr3g0117091 37.895 95 57 2 71 164 17 110 2.71e-17 79.3
MsaG036460 MtrunA17_Chr6g0480581 37.864 103 62 2 71 172 7 108 2.94e-17 77.8
MsaG036460 MtrunA17_Chr1g0168661 41.935 93 52 2 71 162 26 117 3.03e-17 78.2
MsaG036460 MtrunA17_Chr4g0022911 37.500 104 63 2 71 173 18 120 4.51e-17 78.2
MsaG036460 MtrunA17_Chr8g0342521 36.538 104 64 2 62 164 8 110 4.76e-17 78.6
MsaG036460 MtrunA17_Chr1g0193371 38.000 100 60 2 71 169 17 115 5.09e-17 78.6
MsaG036460 MtrunA17_Chr4g0022901 37.500 104 63 2 71 173 18 120 6.64e-17 77.4
MsaG036460 MtrunA17_Chr4g0070641 40.426 94 54 2 71 163 17 109 7.06e-17 75.1
MsaG036460 MtrunA17_Chr2g0330041 36.538 104 64 2 62 164 8 110 8.20e-17 78.2
MsaG036460 MtrunA17_Chr1g0186061 39.785 93 54 2 71 162 25 116 9.51e-17 76.6
MsaG036460 MtrunA17_Chr4g0070611 40.000 95 55 2 71 164 17 110 1.13e-16 77.0
MsaG036460 MtrunA17_Chr7g0240821 39.796 98 55 3 69 164 4 99 1.15e-16 75.9
MsaG036460 MtrunA17_Chr4g0022931 34.127 126 76 3 71 190 18 142 1.33e-16 76.6
MsaG036460 MtrunA17_Chr4g0048511 35.200 125 76 3 71 194 18 138 1.35e-16 77.4
MsaG036460 MtrunA17_Chr4g0058631 37.500 96 58 2 71 165 17 111 2.15e-16 77.0
MsaG036460 MtrunA17_Chr2g0327821 34.646 127 80 3 71 195 11 136 2.30e-16 75.1
MsaG036460 MtrunA17_Chr7g0270891 38.542 96 57 2 71 165 17 111 2.33e-16 76.6
MsaG036460 MtrunA17_Chr8g0349261 38.144 97 53 3 71 163 18 111 2.39e-16 76.3
MsaG036460 MtrunA17_Chr2g0323411 39.000 100 59 2 71 169 17 115 2.87e-16 76.3
MsaG036460 MtrunA17_Chr5g0395281 36.538 104 64 2 61 163 7 109 2.92e-16 75.9
MsaG036460 MtrunA17_Chr3g0115821 37.864 103 62 2 62 163 8 109 2.93e-16 76.3
MsaG036460 MtrunA17_Chr3g0088461 36.842 114 60 4 62 169 18 125 3.35e-16 76.3
MsaG036460 MtrunA17_Chr3g0125801 40.000 95 56 1 71 165 19 112 3.78e-16 75.5
MsaG036460 MtrunA17_Chr2g0281071 38.000 100 60 2 71 169 18 116 4.43e-16 75.9
MsaG036460 MtrunA17_Chr1g0209661 38.095 105 61 3 61 162 20 123 4.72e-16 75.5
MsaG036460 MtrunA17_Chr8g0342481 38.542 96 56 3 71 164 17 111 4.74e-16 76.3
MsaG036460 MtrunA17_Chr8g0343831 40.426 94 54 2 71 163 13 105 7.07e-16 74.3
MsaG036460 MtrunA17_Chr6g0452271 36.735 98 60 2 71 167 17 113 7.59e-16 75.1
MsaG036460 MtrunA17_Chr7g0254261 41.414 99 57 1 71 169 92 189 7.81e-16 75.1
MsaG036460 MtrunA17_Chr1g0180391 37.634 93 56 2 71 162 24 115 8.19e-16 73.6
MsaG036460 MtrunA17_Chr2g0328771 34.615 130 65 5 71 194 25 140 1.15e-15 74.3
MsaG036460 MtrunA17_Chr7g0261281 36.792 106 61 3 71 173 17 119 1.18e-15 73.9
MsaG036460 MtrunA17_Chr7g0271241 38.298 94 56 2 71 163 17 109 1.19e-15 74.7
MsaG036460 MtrunA17_Chr2g0323351 34.921 126 72 4 71 187 17 141 1.20e-15 73.6
MsaG036460 MtrunA17_Chr5g0410961 36.842 95 58 2 71 164 17 110 1.24e-15 74.7
MsaG036460 MtrunA17_Chr5g0437321 36.170 94 59 1 71 164 22 114 1.42e-15 73.9
MsaG036460 MtrunA17_Chr4g0039971 36.893 103 63 2 62 163 9 110 1.56e-15 74.3
MsaG036460 MtrunA17_Chr8g0346561 37.113 97 55 3 71 164 17 110 1.88e-15 73.6
MsaG036460 MtrunA17_Chr5g0397231 35.577 104 65 2 62 164 8 110 2.17e-15 73.9
MsaG036460 MtrunA17_Chr1g0154031 30.061 163 101 6 71 222 81 241 2.58e-15 73.9
MsaG036460 MtrunA17_Chr4g0030881 34.545 110 63 2 71 172 12 120 2.64e-15 72.8
MsaG036460 MtrunA17_Chr1g0203441 36.607 112 59 4 71 176 18 123 2.64e-15 72.8
MsaG036460 MtrunA17_Chr1g0167661 33.557 149 79 6 71 202 17 162 2.65e-15 72.8
MsaG036460 MtrunA17_Chr5g0435101 38.542 96 55 3 71 164 16 109 2.70e-15 72.0
MsaG036460 MtrunA17_Chr8g0387421 35.577 104 65 2 62 164 8 110 3.04e-15 73.2
MsaG036460 MtrunA17_Chr7g0247131 42.466 73 39 2 93 163 4 75 4.21e-15 72.4
MsaG036460 MtrunA17_Chr5g0440781 35.000 100 60 2 71 167 17 114 5.00e-15 70.5
MsaG036460 MtrunA17_Chr3g0103281 40.000 95 55 2 70 163 16 109 5.16e-15 72.8
MsaG036460 MtrunA17_Chr1g0194291 34.286 105 67 2 59 162 14 117 6.84e-15 71.6
MsaG036460 MtrunA17_Chr5g0441141 35.000 100 60 2 71 167 17 114 6.98e-15 71.6
MsaG036460 MtrunA17_Chr1g0194301 35.238 105 64 3 71 172 38 141 7.58e-15 71.6
MsaG036460 MtrunA17_Chr3g0121241 38.542 96 53 3 71 163 47 139 8.92e-15 71.6
MsaG036460 MtrunA17_Chr4g0057031 38.298 94 56 2 71 163 17 109 9.40e-15 71.2
MsaG036460 MtrunA17_Chr5g0440761 35.000 100 60 2 71 167 17 114 9.43e-15 71.2
MsaG036460 MtrunA17_Chr4g0044421 38.144 97 54 3 71 164 17 110 9.46e-15 70.1
MsaG036460 MtrunA17_Chr7g0228231 38.710 93 55 2 71 162 19 110 9.77e-15 70.1
MsaG036460 MtrunA17_Chr4g0042671 34.109 129 80 3 71 198 17 141 9.99e-15 72.4
MsaG036460 MtrunA17_Chr1g0203411 36.792 106 59 4 71 171 17 119 1.05e-14 71.6
MsaG036460 MtrunA17_Chr8g0334881 39.394 99 57 3 71 167 15 112 1.05e-14 71.6
MsaG036460 MtrunA17_Chr7g0275911 35.052 97 57 3 71 164 17 110 1.10e-14 70.9
MsaG036460 MtrunA17_Chr5g0434931 38.947 95 54 3 71 163 40 132 1.25e-14 71.2
MsaG036460 MtrunA17_Chr3g0131121 37.755 98 51 4 71 163 17 109 1.43e-14 71.2
MsaG036460 MtrunA17_Chr4g0037141 36.735 98 52 4 71 163 17 109 1.57e-14 70.9
MsaG036460 MtrunA17_Chr4g0068061 38.776 98 54 3 70 164 16 110 1.68e-14 71.2
MsaG036460 MtrunA17_Chr7g0233161 53.333 60 25 1 60 119 294 350 1.70e-14 71.2
MsaG036460 MtrunA17_Chr4g0046181 49.206 63 29 1 57 119 213 272 1.96e-14 70.9
MsaG036460 MtrunA17_Chr4g0053431 34.043 94 61 1 71 164 8 100 2.00e-14 70.5
MsaG036460 MtrunA17_Chr6g0450101 38.710 93 55 2 71 162 19 110 2.29e-14 69.3
MsaG036460 MtrunA17_Chr7g0217221 34.211 114 73 2 71 183 17 129 3.11e-14 69.7
MsaG036460 MtrunA17_Chr7g0220341 39.175 97 55 2 71 164 30 125 3.11e-14 70.1
MsaG036460 MtrunA17_Chr7g0217741 37.864 103 62 2 71 172 17 118 3.14e-14 70.5
MsaG036460 MtrunA17_Chr7g0228891 38.384 99 51 4 71 164 17 110 3.20e-14 69.7
MsaG036460 MtrunA17_Chr8g0385321 35.354 99 52 4 71 163 17 109 3.28e-14 70.5
MsaG036460 MtrunA17_Chr4g0013361 38.739 111 61 5 68 173 9 117 3.38e-14 70.1
MsaG036460 MtrunA17_Chr6g0460671 38.947 95 57 1 71 165 102 195 3.58e-14 70.5
MsaG036460 MtrunA17_Chr7g0228991 37.234 94 57 2 71 163 34 126 3.68e-14 69.7
MsaG036460 MtrunA17_Chr5g0434571 39.175 97 53 3 71 164 53 146 6.45e-14 69.7
MsaG036460 MtrunA17_Chr3g0110351 39.175 97 53 3 71 164 17 110 6.45e-14 69.3
MsaG036460 MtrunA17_Chr3g0099131 35.644 101 61 3 71 169 46 144 7.38e-14 70.1
MsaG036460 MtrunA17_Chr1g0187761 32.283 127 80 3 71 194 17 140 9.47e-14 68.6
MsaG036460 MtrunA17_Chr5g0434831 38.947 95 54 3 71 163 12 104 1.04e-13 67.0
MsaG036460 MtrunA17_Chr4g0060721 33.043 115 75 2 71 184 18 131 1.85e-13 68.2
MsaG036460 MtrunA17_Chr5g0434911 39.362 94 53 3 71 162 26 117 2.51e-13 67.4
MsaG036460 MtrunA17_Chr1g0194951 38.776 98 54 3 70 164 16 110 2.64e-13 68.2
MsaG036460 MtrunA17_Chr7g0254411 37.234 94 57 2 71 163 17 109 2.97e-13 67.8
MsaG036460 MtrunA17_Chr3g0080861 32.000 100 66 2 71 169 42 140 3.00e-13 68.2
MsaG036460 MtrunA17_Chr3g0104501 56.000 50 22 0 70 119 135 184 3.34e-13 65.9
MsaG036460 MtrunA17_Chr8g0360111 36.559 93 57 2 71 162 30 121 3.63e-13 66.6
MsaG036460 MtrunA17_Chr4g0022881 31.858 113 75 2 71 182 17 128 3.82e-13 66.2
MsaG036460 MtrunA17_Chr5g0434841 38.298 94 54 3 71 162 25 116 4.49e-13 67.0
MsaG036460 MtrunA17_Chr6g0453211 37.234 94 57 2 71 163 17 109 4.60e-13 67.0
MsaG036460 MtrunA17_Chr6g0470971 29.851 134 85 4 65 195 11 138 5.47e-13 66.6
MsaG036460 MtrunA17_Chr3g0092401 35.135 111 70 2 71 180 18 127 7.09e-13 66.6
MsaG036460 MtrunA17_Chr5g0401731 31.915 94 63 1 71 164 18 110 1.08e-12 65.9
MsaG036460 MtrunA17_Chr7g0233151 56.000 50 21 1 123 172 6 54 1.35e-12 63.5
MsaG036460 MtrunA17_Chr6g0487491 29.091 165 96 5 62 210 8 167 1.35e-12 65.1
MsaG036460 MtrunA17_Chr7g0229101 46.875 64 33 1 101 164 8 70 1.59e-12 64.3
MsaG036460 MtrunA17_Chr1g0192411 27.564 156 94 4 71 212 17 167 1.61e-12 65.9
MsaG036460 MtrunA17_Chr2g0311221 36.842 95 58 2 71 164 19 112 1.62e-12 65.5
MsaG036460 MtrunA17_Chr3g0104491 34.091 88 53 2 106 189 1 87 1.77e-12 65.1
MsaG036460 MtrunA17_Chr8g0354661 34.286 105 62 4 71 171 42 143 2.41e-12 65.5
MsaG036460 MtrunA17_Chr6g0453471 34.483 116 71 3 71 185 17 128 3.09e-12 64.7
MsaG036460 MtrunA17_Chr1g0167691 35.789 95 55 3 71 162 17 108 3.19e-12 63.9
MsaG036460 MtrunA17_Chr1g0151941 42.857 63 35 1 101 163 49 110 4.60e-12 63.5
MsaG036460 MtrunA17_Chr6g0454921 30.476 105 70 2 61 163 6 109 7.35e-12 62.4
MsaG036460 MtrunA17_Chr5g0434901 43.750 64 35 1 101 164 9 71 7.38e-12 60.5
MsaG036460 MtrunA17_Chr4g0022891 28.571 119 78 4 71 185 17 132 7.50e-12 62.8
MsaG036460 MtrunA17_Chr4g0028311 38.000 100 51 5 71 164 17 111 1.29e-11 62.8
MsaG036460 MtrunA17_Chr7g0229131 43.590 78 40 2 101 175 8 84 1.38e-11 60.8
MsaG036460 MtrunA17_Chr2g0327351 42.188 64 36 1 101 164 49 111 1.57e-11 62.8
MsaG036460 MtrunA17_Chr5g0417821 34.043 94 60 2 71 163 12 104 1.77e-11 62.4
MsaG036460 MtrunA17_Chr6g0483051 26.984 126 88 2 37 162 40 161 4.29e-11 62.0
MsaG036460 MtrunA17_Chr1g0152011 31.579 133 73 5 71 188 17 146 4.55e-11 61.2
MsaG036460 MtrunA17_Chr4g0054391 36.082 97 55 4 71 163 17 110 5.40e-11 60.8
MsaG036460 MtrunA17_Chr5g0400821 41.270 63 36 1 101 163 49 110 6.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036460 AT4G18770.1 55.340 103 45 1 70 172 219 320 3.29e-35 129
MsaG036460 AT3G27785.1 47.573 103 53 1 70 172 191 292 3.60e-31 119
MsaG036460 AT5G58850.1 40.476 168 91 4 18 183 59 219 1.30e-30 117
MsaG036460 AT5G40360.1 46.957 115 56 2 70 180 160 273 8.31e-30 114
MsaG036460 AT5G11050.1 42.857 119 67 1 70 188 107 224 2.80e-28 110
MsaG036460 AT2G25230.1 42.727 110 61 2 69 177 27 135 6.93e-26 100
MsaG036460 AT5G40430.1 42.202 109 60 3 70 177 56 162 3.52e-24 97.1
MsaG036460 AT5G11510.5 43.000 100 54 2 67 164 78 176 4.80e-23 97.4
MsaG036460 AT5G11510.2 43.000 100 54 2 67 164 78 176 4.98e-23 97.1
MsaG036460 AT5G11510.3 43.000 100 54 2 67 164 78 176 5.03e-23 97.4
MsaG036460 AT5G11510.1 43.000 100 54 2 67 164 78 176 5.03e-23 97.4
MsaG036460 AT5G11510.4 43.000 100 54 2 67 164 78 176 5.03e-23 97.4
MsaG036460 AT3G09370.2 45.745 94 50 1 71 164 138 230 3.65e-22 94.4
MsaG036460 AT3G09370.1 45.745 94 50 1 71 164 133 225 3.67e-22 94.4
MsaG036460 AT3G09370.3 45.745 94 50 1 71 164 146 238 4.61e-22 94.0
MsaG036460 AT5G02320.1 45.000 100 52 2 67 164 124 222 9.08e-22 93.2
MsaG036460 AT5G02320.1 35.870 92 59 0 71 162 78 169 1.21e-14 72.8
MsaG036460 AT5G02320.2 45.000 100 52 2 67 164 124 222 9.08e-22 93.2
MsaG036460 AT5G02320.2 35.870 92 59 0 71 162 78 169 1.21e-14 72.8
MsaG036460 AT5G02320.3 44.681 94 51 1 71 164 70 162 9.55e-22 93.2
MsaG036460 AT5G02320.3 35.484 93 60 0 71 163 18 110 1.34e-14 72.4
MsaG036460 AT4G00540.2 46.392 97 48 2 71 164 106 201 1.71e-21 92.0
MsaG036460 AT4G00540.2 31.852 135 77 3 43 162 14 148 2.69e-14 71.6
MsaG036460 AT4G00540.1 46.392 97 48 2 71 164 104 199 2.67e-21 91.7
MsaG036460 AT4G00540.1 37.000 100 55 2 71 162 47 146 7.59e-14 70.1
MsaG036460 AT4G32730.5 42.000 100 55 2 67 164 84 182 3.81e-21 91.7
MsaG036460 AT4G32730.4 42.000 100 55 2 67 164 84 182 3.81e-21 91.7
MsaG036460 AT4G32730.3 42.000 100 55 2 67 164 84 182 3.81e-21 91.7
MsaG036460 AT4G32730.2 42.000 100 55 2 67 164 84 182 3.81e-21 91.7
MsaG036460 AT4G32730.1 42.000 100 55 2 67 164 84 182 4.29e-21 91.7
MsaG036460 AT2G02820.1 38.017 121 73 2 60 180 22 140 4.96e-20 88.2
MsaG036460 AT2G02820.3 38.017 121 73 2 60 180 22 140 5.47e-20 87.0
MsaG036460 AT2G02820.2 38.017 121 73 2 60 180 22 140 6.09e-20 87.8
MsaG036460 AT5G14750.1 41.818 110 58 4 59 164 7 114 6.88e-20 84.3
MsaG036460 AT4G33450.1 36.800 125 78 1 60 184 11 134 1.20e-19 84.7
MsaG036460 AT1G14350.2 39.316 117 69 2 60 176 17 131 1.23e-19 87.0
MsaG036460 AT1G14350.1 39.316 117 69 2 60 176 17 131 1.23e-19 87.0
MsaG036460 AT3G28470.1 40.426 94 54 2 71 163 17 109 9.83e-19 83.2
MsaG036460 AT3G55730.1 36.066 122 69 2 71 184 59 179 3.18e-18 82.8
MsaG036460 AT3G29020.1 40.000 95 56 1 71 165 68 161 3.22e-18 80.5
MsaG036460 AT3G13890.1 36.283 113 61 2 62 164 8 119 4.52e-18 82.0
MsaG036460 AT1G17950.1 33.333 135 86 2 71 202 8 141 5.20e-18 80.1
MsaG036460 AT3G29020.2 40.000 95 56 1 71 165 70 163 6.07e-18 80.9
MsaG036460 AT1G69560.1 40.000 95 56 1 71 165 110 203 8.05e-18 80.9
MsaG036460 AT1G69560.2 40.000 95 56 1 71 165 126 219 8.36e-18 81.3
MsaG036460 AT2G39880.1 36.522 115 70 2 59 171 39 152 2.00e-17 80.1
MsaG036460 AT5G40330.1 39.623 106 60 3 60 163 6 109 2.49e-17 77.8
MsaG036460 AT4G28110.1 41.000 100 57 2 71 169 17 115 2.50e-17 79.0
MsaG036460 AT3G13890.2 36.538 104 64 2 62 164 8 110 2.79e-17 79.7
MsaG036460 AT3G24310.1 43.011 93 51 2 71 162 23 114 6.13e-17 77.8
MsaG036460 AT1G26780.1 38.947 95 57 1 71 165 101 194 6.83e-17 77.8
MsaG036460 AT3G27920.1 41.584 101 53 4 67 163 13 111 7.63e-17 76.6
MsaG036460 AT1G26780.2 38.947 95 57 1 71 165 101 194 9.69e-17 78.2
MsaG036460 AT1G09540.1 40.000 95 55 2 71 164 17 110 1.24e-16 77.8
MsaG036460 AT5G17800.1 34.058 138 80 3 71 203 96 227 1.53e-16 77.4
MsaG036460 AT5G26660.1 38.542 96 57 2 71 165 17 111 1.56e-16 77.4
MsaG036460 AT5G35550.1 36.752 117 72 2 71 186 19 134 1.56e-16 76.3
MsaG036460 AT5G12870.1 37.037 108 56 4 71 172 23 124 2.07e-16 76.3
MsaG036460 AT4G13480.1 41.935 93 52 2 71 162 11 102 2.12e-16 76.3
MsaG036460 AT4G05100.1 38.182 110 64 3 63 169 8 116 2.13e-16 77.0
MsaG036460 AT2G26950.1 39.216 102 57 4 70 169 20 118 2.14e-16 77.4
MsaG036460 AT3G61250.1 38.542 96 53 3 71 163 17 109 2.37e-16 76.6
MsaG036460 AT3G12720.1 36.842 95 58 2 71 164 27 120 2.62e-16 76.6
MsaG036460 AT1G57560.1 31.410 156 94 5 71 218 17 167 2.63e-16 76.6
MsaG036460 AT3G08500.1 35.965 114 67 3 59 169 23 133 2.64e-16 77.0
MsaG036460 AT4G01680.1 38.947 95 56 2 71 164 17 110 2.83e-16 76.6
MsaG036460 AT3G09230.1 33.333 114 73 2 58 169 43 155 4.05e-16 76.6
MsaG036460 AT4G01680.3 38.947 95 56 2 71 164 17 110 4.08e-16 75.1
MsaG036460 AT1G57560.2 40.206 97 54 3 71 165 17 111 4.15e-16 75.5
MsaG036460 AT1G73410.1 39.394 99 59 1 71 169 9 106 5.93e-16 74.7
MsaG036460 AT4G01680.2 37.383 107 53 3 71 164 17 122 7.29e-16 75.5
MsaG036460 AT3G30210.1 40.860 93 53 2 71 162 32 123 8.07e-16 74.7
MsaG036460 AT1G73410.2 39.394 99 59 1 71 169 9 106 1.01e-15 73.2
MsaG036460 AT4G21440.1 34.400 125 77 3 71 194 17 137 1.55e-15 74.7
MsaG036460 AT2G47190.1 40.860 93 53 2 71 162 25 116 1.79e-15 73.6
MsaG036460 AT1G63910.1 36.538 104 64 2 62 164 8 110 1.92e-15 74.7
MsaG036460 AT4G12350.1 39.362 94 55 2 71 163 17 109 1.93e-15 73.9
MsaG036460 AT3G27810.1 32.800 125 82 2 71 194 25 148 2.34e-15 72.8
MsaG036460 AT3G48920.1 41.053 95 54 2 71 164 23 116 2.70e-15 73.2
MsaG036460 AT3G46130.1 37.624 101 61 2 63 162 6 105 2.71e-15 73.2
MsaG036460 AT5G52600.1 39.623 106 59 3 63 164 6 110 2.95e-15 72.0
MsaG036460 AT2G31180.1 36.207 116 66 4 71 181 17 129 3.04e-15 72.8
MsaG036460 AT1G74430.1 37.143 105 64 2 71 174 17 120 3.23e-15 73.2
MsaG036460 AT4G22680.1 38.947 95 56 2 71 164 17 110 4.64e-15 72.4
MsaG036460 AT2G32460.1 29.452 146 91 5 71 213 23 159 5.04e-15 73.6
MsaG036460 AT3G60460.1 39.091 110 61 4 63 167 5 113 5.39e-15 72.8
MsaG036460 AT2G32460.2 29.452 146 91 5 71 213 11 147 6.01e-15 73.6
MsaG036460 AT3G13540.1 38.144 97 54 3 71 164 28 121 6.35e-15 72.0
MsaG036460 AT5G59780.3 38.384 99 57 3 67 162 7 104 7.10e-15 71.6
MsaG036460 AT4G09460.1 37.755 98 51 4 71 163 17 109 8.90e-15 71.2
MsaG036460 AT1G34670.1 33.333 120 75 3 71 189 17 132 9.03e-15 72.8
MsaG036460 AT3G11440.2 33.981 103 65 3 71 171 46 147 9.19e-15 72.8
MsaG036460 AT5G35550.2 32.759 116 71 3 101 211 53 166 9.38e-15 71.6
MsaG036460 AT1G66380.1 42.105 95 51 3 71 163 13 105 9.82e-15 68.9
MsaG036460 AT3G53200.1 34.906 106 65 3 71 174 14 117 9.83e-15 71.2
MsaG036460 AT1G68320.1 38.710 93 55 2 71 162 24 115 1.19e-14 71.6
MsaG036460 AT3G11440.3 33.981 103 65 3 71 171 46 147 1.31e-14 72.8
MsaG036460 AT3G11440.4 33.981 103 65 3 71 171 46 147 1.31e-14 72.8
MsaG036460 AT3G11440.1 33.981 103 65 3 71 171 46 147 1.31e-14 72.8
MsaG036460 AT5G26660.2 45.312 64 34 1 101 164 17 79 1.37e-14 71.6
MsaG036460 AT5G54230.1 33.600 125 78 3 71 194 17 137 1.42e-14 71.6
MsaG036460 AT5G10280.1 38.947 95 56 2 71 164 17 110 1.43e-14 72.0
MsaG036460 AT5G62470.1 32.558 129 83 2 71 199 17 141 1.45e-14 72.0
MsaG036460 AT5G65230.1 39.362 94 55 2 71 163 17 109 2.11e-14 71.2
MsaG036460 AT3G50060.1 31.481 108 73 1 71 178 9 115 2.21e-14 70.9
MsaG036460 AT5G56110.1 38.947 95 56 2 70 163 16 109 2.29e-14 71.2
MsaG036460 AT1G48000.1 34.783 115 69 3 71 184 37 146 2.85e-14 70.1
MsaG036460 AT5G06100.1 35.849 106 59 4 71 171 37 138 2.86e-14 71.6
MsaG036460 AT5G40350.1 38.710 93 55 2 71 162 22 113 3.00e-14 69.3
MsaG036460 AT1G06180.1 37.895 95 53 3 71 162 17 108 3.12e-14 70.1
MsaG036460 AT5G06100.5 35.849 106 59 4 71 171 37 138 3.45e-14 71.2
MsaG036460 AT5G06100.2 35.849 106 59 4 71 171 37 138 3.45e-14 71.2
MsaG036460 AT5G06100.3 35.849 106 59 4 71 171 37 138 3.45e-14 71.2
MsaG036460 AT5G06100.4 35.849 106 59 4 71 171 37 138 3.45e-14 71.2
MsaG036460 AT1G22640.1 37.000 100 49 5 71 163 17 109 3.60e-14 70.1
MsaG036460 AT5G16770.4 35.000 100 63 2 71 169 17 115 3.72e-14 70.5
MsaG036460 AT5G16770.3 35.000 100 63 2 71 169 17 115 3.72e-14 70.5
MsaG036460 AT4G38620.1 36.735 98 52 4 71 163 17 109 3.84e-14 70.1
MsaG036460 AT1G66370.1 38.542 96 55 3 71 164 13 106 3.89e-14 69.7
MsaG036460 AT5G16770.1 35.000 100 63 2 71 169 17 115 5.07e-14 70.5
MsaG036460 AT5G16770.2 35.000 100 63 2 71 169 17 115 5.07e-14 70.5
MsaG036460 AT3G01530.1 36.364 110 66 4 71 177 30 138 5.61e-14 68.6
MsaG036460 AT2G26960.1 34.579 107 66 3 60 163 12 117 6.46e-14 70.5
MsaG036460 AT3G23250.1 37.895 95 53 3 71 162 17 108 6.68e-14 69.7
MsaG036460 AT1G35515.1 35.789 95 59 2 71 164 17 110 7.87e-14 68.2
MsaG036460 AT3G02940.2 34.615 104 66 2 62 164 8 110 9.56e-14 69.3
MsaG036460 AT3G47600.1 38.298 94 56 2 71 163 17 109 1.17e-13 69.3
MsaG036460 AT5G39700.1 36.842 95 59 1 71 165 59 152 1.19e-13 67.4
MsaG036460 AT1G66230.1 39.583 96 54 3 71 164 17 110 1.22e-13 68.9
MsaG036460 AT2G16720.1 36.364 99 53 4 71 164 17 110 1.28e-13 68.6
MsaG036460 AT3G02940.1 34.615 104 66 2 62 164 8 110 1.33e-13 68.9
MsaG036460 AT3G02940.3 34.615 104 66 2 62 164 8 110 1.33e-13 68.9
MsaG036460 AT1G25340.2 37.037 108 61 3 57 162 7 109 1.51e-13 68.6
MsaG036460 AT5G67300.1 34.043 94 61 1 71 164 9 101 1.78e-13 68.6
MsaG036460 AT5G14750.3 43.750 64 35 1 101 164 18 80 2.37e-13 66.2
MsaG036460 AT1G25340.3 37.037 108 61 3 57 162 7 109 2.79e-13 68.2
MsaG036460 AT5G14340.1 38.384 99 51 4 71 164 29 122 2.79e-13 67.8
MsaG036460 AT4G17785.2 31.933 119 76 3 71 188 18 132 2.88e-13 68.2
MsaG036460 AT1G74080.1 39.362 94 55 2 71 163 17 109 3.11e-13 68.2
MsaG036460 AT1G25340.1 37.615 109 64 3 57 162 7 114 3.15e-13 67.8
MsaG036460 AT4G17785.1 31.933 119 76 3 71 188 18 132 3.41e-13 68.2
MsaG036460 AT5G62470.2 32.308 130 83 3 71 199 17 142 4.04e-13 67.8
MsaG036460 AT4G34990.1 34.737 95 60 2 71 164 17 110 4.85e-13 67.0
MsaG036460 AT5G55020.1 35.789 95 57 3 71 163 31 123 5.36e-13 67.8
MsaG036460 AT5G49330.1 37.755 98 55 3 70 164 16 110 5.86e-13 67.4
MsaG036460 AT1G08810.1 34.211 114 73 2 71 183 17 129 6.48e-13 66.6
MsaG036460 AT4G37260.1 32.979 94 62 1 71 164 16 108 7.95e-13 66.6
MsaG036460 AT1G56160.1 35.294 102 60 3 71 169 19 117 1.25e-12 65.9
MsaG036460 AT3G27810.2 32.979 94 62 1 101 194 7 99 1.31e-12 64.3
MsaG036460 AT5G07690.1 39.362 94 55 2 71 163 17 109 1.48e-12 66.2
MsaG036460 AT1G18570.1 38.298 94 56 2 71 163 18 110 1.66e-12 66.2
MsaG036460 AT2G23290.1 34.737 95 59 2 71 164 16 108 1.70e-12 65.9
MsaG036460 AT1G74650.1 37.234 94 57 2 71 163 17 109 1.85e-12 65.9
MsaG036460 AT1G79180.1 32.283 127 78 4 62 185 10 131 2.48e-12 65.1
MsaG036460 AT3G53200.2 39.189 74 44 1 101 174 12 84 2.59e-12 63.9
MsaG036460 AT5G15310.2 33.621 116 72 3 71 185 17 128 2.74e-12 65.1
MsaG036460 AT5G15310.4 33.621 116 72 3 71 185 17 128 3.02e-12 64.3
MsaG036460 AT5G15310.1 33.621 116 72 3 71 185 17 128 3.08e-12 65.1
MsaG036460 AT5G16600.1 37.113 97 55 3 71 164 17 110 3.34e-12 65.1
MsaG036460 AT3G01140.1 36.170 94 58 2 71 163 60 152 3.48e-12 65.1
MsaG036460 AT3G01140.2 36.170 94 58 2 71 163 17 109 3.64e-12 65.1
MsaG036460 AT1G56650.1 37.895 95 57 2 71 164 13 106 3.91e-12 64.3
MsaG036460 AT3G28910.1 37.500 96 54 3 71 163 17 109 4.63e-12 64.7
MsaG036460 AT5G07700.1 38.947 95 56 2 71 164 17 110 4.77e-12 64.7
MsaG036460 AT5G07700.2 38.947 95 56 2 71 164 17 110 4.77e-12 64.7
MsaG036460 AT1G16490.1 32.632 95 63 1 101 195 50 143 5.03e-12 63.9
MsaG036460 AT2G47460.1 36.458 96 59 2 70 164 16 110 6.37e-12 64.3
MsaG036460 AT1G66390.1 41.053 95 52 3 71 163 13 105 7.58e-12 63.2
MsaG036460 AT4G25560.1 31.818 110 73 2 71 179 15 123 7.67e-12 63.5
MsaG036460 AT5G61420.2 31.293 147 86 4 71 203 17 162 9.73e-12 63.9
MsaG036460 AT1G18710.1 31.429 105 70 2 71 174 17 120 1.01e-11 63.2
MsaG036460 AT3G62610.1 35.417 96 60 2 70 164 16 110 1.31e-11 63.5
MsaG036460 AT5G23000.1 35.185 108 53 4 71 169 17 116 1.36e-11 63.2
MsaG036460 AT3G18100.1 36.957 92 57 1 71 162 498 588 2.73e-11 63.2
MsaG036460 AT3G49690.1 37.113 97 54 4 71 163 17 110 2.83e-11 62.4
MsaG036460 AT3G18100.3 36.957 92 57 1 71 162 450 540 3.10e-11 62.8
MsaG036460 AT5G57620.1 35.417 96 59 3 71 164 17 111 3.22e-11 62.4
MsaG036460 AT5G40350.2 41.935 62 35 1 101 162 8 68 3.25e-11 60.1
MsaG036460 AT5G60890.1 35.922 103 61 3 65 163 8 109 3.26e-11 62.0
MsaG036460 AT3G12820.2 40.278 72 42 1 101 172 2 72 3.76e-11 60.5
MsaG036460 AT3G18100.4 36.957 92 57 1 71 162 337 427 3.78e-11 62.4
MsaG036460 AT1G71030.2 41.667 60 34 1 103 162 4 62 4.68e-11 60.1
MsaG036460 AT3G18100.2 36.957 92 57 1 71 162 285 375 4.77e-11 62.0
MsaG036460 AT3G47600.2 42.857 63 35 1 101 163 42 103 5.13e-11 61.6
MsaG036460 AT5G52260.1 35.644 101 61 3 71 169 17 115 6.62e-11 60.8
MsaG036460 AT5G59780.2 41.935 62 35 1 101 162 23 83 6.97e-11 60.1
MsaG036460 AT1G14350.3 36.957 92 43 3 85 176 12 88 7.46e-11 61.2
MsaG036460 AT1G14350.4 36.957 92 43 3 85 176 12 88 7.46e-11 61.2
MsaG036460 AT1G79180.2 37.647 85 50 2 101 185 83 164 7.51e-11 61.2

Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCGTTTAGCAACCTTTA+AGG 0.177380 7:+34794588 MsaT036460.1:CDS
TTTAACGAATATCATCTAAA+TGG 0.219576 7:+34792825 MsaT036460.1:CDS
CGTGTTCATTGAGTTGTTCT+TGG 0.251185 7:-34794451 None:intergenic
AAAATGTAGTTGAGAATAAT+TGG 0.251203 7:+34794346 MsaT036460.1:CDS
ATATTCGTTAAATTGAAATA+AGG 0.318920 7:-34792814 None:intergenic
CTATCTTCGACCAGATATTA+AGG 0.329716 7:+34793226 MsaT036460.1:CDS
GAAATTGTTAAGAGATTTCC+AGG 0.336421 7:+34794372 MsaT036460.1:CDS
TTAACGAATATCATCTAAAT+GGG 0.347481 7:+34792826 MsaT036460.1:CDS
AAGATAGGCACCTTAATATC+TGG 0.386677 7:-34793236 None:intergenic
TCATCACTAATATTAACATT+TGG 0.410601 7:-34794492 None:intergenic
CATATTGCTACCTTTCTAGA+TGG 0.420484 7:+34793167 MsaT036460.1:CDS
GGAATGCCATTGAGCGTGTT+CGG 0.431584 7:+34794424 MsaT036460.1:CDS
TTCAGAGTGTGATTATGAAA+TGG 0.434618 7:+34794518 MsaT036460.1:CDS
TTCAGTCTTGCCATCTAGAA+AGG 0.458563 7:-34793177 None:intergenic
TAGCATTCTTCTGGAATCTG+TGG 0.461377 7:+34793118 MsaT036460.1:intron
CAAAGAACGAATATGTCAAA+TGG 0.473458 7:+34792949 MsaT036460.1:CDS
AGCATTCTTCTGGAATCTGT+GGG 0.475646 7:+34793119 MsaT036460.1:intron
GGCATTCCGAACACGCTCAA+TGG 0.476690 7:-34794430 None:intergenic
CACTAATATTAACATTTGGT+TGG 0.486948 7:-34794488 None:intergenic
AGAGTTCAGTTAAGAACCAT+TGG 0.497650 7:+34794403 MsaT036460.1:CDS
AGATCGGGTACATGGAGAAT+AGG 0.502294 7:-34792896 None:intergenic
CAAGCTTGTAATAAGAGATC+GGG 0.505248 7:-34792911 None:intergenic
TTCGTTAAATTGAAATAAGG+TGG 0.506706 7:-34792811 None:intergenic
GCAAGCTTGTAATAAGAGAT+CGG 0.519747 7:-34792912 None:intergenic
GTACATGGAGAATAGGTTGT+TGG 0.521390 7:-34792889 None:intergenic
CATGGAGAATAGGTTGTTGG+AGG 0.533287 7:-34792886 None:intergenic
ACTGAACTCTCAGTACGGCC+TGG 0.548161 7:-34794390 None:intergenic
AAGAGTAGAACTTTCATGCA+AGG 0.551994 7:-34792766 None:intergenic
GTTGCTTTGAGCTTAAAGAA+TGG 0.554111 7:+34793141 MsaT036460.1:CDS
GTAATAAGAGATCGGGTACA+TGG 0.559791 7:-34792904 None:intergenic
AATGGACCGCAGAAGAGGAT+AGG 0.569224 7:+34792967 MsaT036460.1:CDS
AGAGTAGAACTTTCATGCAA+GGG 0.583609 7:-34792765 None:intergenic
TGTCAAATGGACCGCAGAAG+AGG 0.585698 7:+34792962 MsaT036460.1:CDS
AAGGTGGTGTAATGTGATGG+TGG 0.600642 7:-34792795 None:intergenic
CACGCTCAATGGCATTCCAA+TGG 0.603862 7:-34794419 None:intergenic
TTGTAGCGAAACTAGAGTGA+TGG 0.606093 7:-34792854 None:intergenic
GATATACCTATCCTCTTCTG+CGG 0.623432 7:-34792973 None:intergenic
TCTTAACTGAACTCTCAGTA+CGG 0.632743 7:-34794395 None:intergenic
TAACGAATATCATCTAAATG+GGG 0.641002 7:+34792827 MsaT036460.1:CDS
CAAGAACAACTCAATGAACA+CGG 0.646667 7:+34794452 MsaT036460.1:CDS
AATAAGGTGGTGTAATGTGA+TGG 0.648505 7:-34792798 None:intergenic
TATGCTTGCAGGATGAACCA+TGG 0.685451 7:+34794286 MsaT036460.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 34792759 34794608 34792759 ID=MsaG036460
Chr7 mRNA 34792759 34794608 34792759 ID=MsaT036460.1;Parent=MsaG036460
Chr7 exon 34792759 34792988 34792759 ID=MsaT036460.1.exon1;Parent=MsaT036460.1
Chr7 CDS 34792759 34792988 34792759 ID=cds.MsaT036460.1;Parent=MsaT036460.1
Chr7 exon 34793121 34793247 34793121 ID=MsaT036460.1.exon2;Parent=MsaT036460.1
Chr7 CDS 34793121 34793247 34793121 ID=cds.MsaT036460.1;Parent=MsaT036460.1
Chr7 exon 34794297 34794608 34794297 ID=MsaT036460.1.exon3;Parent=MsaT036460.1
Chr7 CDS 34794297 34794608 34794297 ID=cds.MsaT036460.1;Parent=MsaT036460.1
Gene Sequence

>MsaT036460.1

ATGATTCCCTTGCATGAAAGTTCTACTCTTTCAACTCCACCATCACATTACACCACCTTATTTCAATTTAACGAATATCATCTAAATGGGGTTAACCATCACTCTAGTTTCGCTACAACGATTTCTTCCTCCAACAACCTATTCTCCATGTACCCGATCTCTTATTACAAGCTTGCAGACAACAATGAATCAAAGAACGAATATGTCAAATGGACCGCAGAAGAGGATAGCATTCTTCTGGAATCTGTGGGTTGCTTTGAGCTTAAAGAATGGTCACATATTGCTACCTTTCTAGATGGCAAGACTGAAAAACAATGCAGGGAGAGATGGTATAACTATCTTCGACCAGATATTAAGGATGAACCATGGAGTAAAAAAGAAGAAACTATACTACTTGAACTTCAGAAAAATGTAGTTGAGAATAATTGGACTGAAATTGTTAAGAGATTTCCAGGCCGTACTGAGAGTTCAGTTAAGAACCATTGGAATGCCATTGAGCGTGTTCGGAATGCCAAGAACAACTCAATGAACACGGCTAATGTTGAAAACCAACCAAATGTTAATATTAGTGATGAAAGTTCAGAGTGTGATTATGAAATGGAGTTTTTTCCTGAGGTTTTTATGCAGCAGGAAATTGATTTCATGAAGAAGTCGTTTAGCAACCTTTAA
Protein sequence

>MsaT036460.1

MIPLHESSTLSTPPSHYTTLFQFNEYHLNGVNHHSSFATTISSSNNLFSMYPISYYKLADNNESKNEYVKWTAEEDSILLESVGCFELKEWSHIATFLDGKTEKQCRERWYNYLRPDIKDEPWSKKEETILLELQKNVVENNWTEIVKRFPGRTESSVKNHWNAIERVRNAKNNSMNTANVENQPNVNISDESSECDYEMEFFPEVFMQQEIDFMKKSFSNL*