AlfalfaGEDB | MsaG036626

M. sativa ssp. caerulea / MsaG036626

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036626	XP_039688063.1	88.235	136	16	0	1	136	38	173	2.95e-81	256

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036626	tr\|A0A072U9Z0\|A0A072U9Z0_MEDTR	78.358	134	18	2	1	134	61	183	4.52e-67	211

TFs/TRs:

Gene ID	Type	Classification
MsaG036626	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036626	MtrunA17_Chr4g0033611	36.029	136	71	5	11	140	61	186	6.91e-19	79.7
MsaG036626	MtrunA17_Chr2g0329421	34.307	137	79	3	1	135	1	128	4.20e-17	74.3
MsaG036626	MtrunA17_Chr7g0233911	37.069	116	58	4	26	136	33	138	1.59e-14	67.4
MsaG036626	MtrunA17_Chr2g0329361	32.353	136	75	4	8	136	41	166	7.76e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036626	AT3G59470.3	37.838	111	58	3	26	134	69	170	3.58e-14	67.4
MsaG036626	AT3G59470.1	37.838	111	58	3	26	134	69	170	3.58e-14	67.4
MsaG036626	AT3G59470.2	37.838	111	58	3	26	134	81	182	3.90e-14	67.4
MsaG036626	AT3G07500.1	31.618	136	74	5	11	134	6	134	8.04e-13	63.5

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTTACCATCCTTCTTATT+TGG	0.212526	7:+39648550	None:intergenic
TTTAATTCATCATCACAATT+TGG	0.253101	7:+39648736	None:intergenic
ACTTCAAGAGACCGTTTCTA+AGG	0.391113	7:-39648388	None:intergenic
TCAAATACTTGTCCAATCAT+AGG	0.403178	7:+39648712	None:intergenic
GATGAATTAAAGCCTATGAT+TGG	0.477938	7:-39648724	MsaT036626.1:CDS
GGGTTATTTGCCAAATAAGA+AGG	0.490320	7:-39648560	MsaT036626.1:CDS
CTGTCAAGGTTAGAAGAAGA+AGG	0.491761	7:-39648513	MsaT036626.1:CDS
GCCAAATAAGAAGGATGGTA+AGG	0.493986	7:-39648551	MsaT036626.1:CDS
AAACGGTCTCTTGAAGTAAG+TGG	0.510860	7:+39648394	None:intergenic
TTGAAGTAAGTGGATGTGTA+TGG	0.512376	7:+39648404	None:intergenic
TTCCTTGTAGACCTTAGAAA+CGG	0.517176	7:+39648377	None:intergenic
AGTTGATGTATCTTTGTCCA+TGG	0.526717	7:+39649229	None:intergenic
AGAAGGGCTTTAACAAGAGA+AGG	0.550276	7:-39648496	MsaT036626.1:CDS
TATTTGCCAAATAAGAAGGA+TGG	0.592394	7:-39648556	MsaT036626.1:CDS
GCAAAGTGAATCTACTGTCA+AGG	0.595204	7:-39648527	MsaT036626.1:CDS
TGTCAAGGTTAGAAGAAGAA+GGG	0.596214	7:-39648512	MsaT036626.1:CDS
GTATTTGATACGTTAGCAGA+AGG	0.613843	7:-39648697	MsaT036626.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	39648390	39649249	39648390	ID=MsaG036626
Chr7	mRNA	39648390	39649249	39648390	ID=MsaT036626.1;Parent=MsaG036626
Chr7	exon	39648390	39648773	39648390	ID=MsaT036626.1.exon2;Parent=MsaT036626.1
Chr7	CDS	39648390	39648773	39648390	ID=cds.MsaT036626.1;Parent=MsaT036626.1
Chr7	exon	39649211	39649249	39649211	ID=MsaT036626.1.exon1;Parent=MsaT036626.1
Chr7	CDS	39649211	39649249	39649211	ID=cds.MsaT036626.1;Parent=MsaT036626.1

Gene Sequence

>MsaT036626.1

ATGGACAAAGATACATCAACTTGTTTTCAAATTCCTCAGGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTATGATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATACGCACTCTCTGTCGGATTTAGAGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAACCATACACATCCACTTACTTCAAGAGACCGTTTCTAA

Protein sequence

>MsaT036626.1

MDKDTSTCFQIPQEYECVPNCDDELKPMIGQVFDTLAEGKKIYEKYALSVGFRVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHENHTHPLTSRDRF*