AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036641

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036641 MtrunA17_Chr7g0228231 100.000 130 0 0 1 130 1 130 1.30e-94 271
MsaG036641 MtrunA17_Chr6g0450101 91.200 125 11 0 1 125 1 125 9.68e-84 244
MsaG036641 MtrunA17_Chr1g0209661 75.630 119 28 1 3 120 15 133 3.65e-65 200
MsaG036641 MtrunA17_Chr1g0194291 77.570 107 24 0 14 120 21 127 2.70e-60 186
MsaG036641 MtrunA17_Chr2g0293911 82.301 113 20 0 8 120 18 130 1.35e-59 186
MsaG036641 MtrunA17_Chr4g0068921 74.219 128 32 1 7 134 17 143 2.71e-59 181
MsaG036641 MtrunA17_Chr1g0194301 67.769 121 38 1 14 134 33 152 1.29e-58 182
MsaG036641 MtrunA17_Chr1g0168661 70.476 105 31 0 15 119 22 126 2.34e-52 166
MsaG036641 MtrunA17_Chr1g0186061 68.627 102 32 0 15 116 21 122 7.10e-50 159
MsaG036641 MtrunA17_Chr7g0275911 60.656 122 46 1 1 122 1 120 1.91e-47 153
MsaG036641 MtrunA17_Chr4g0068061 66.667 105 35 0 14 118 12 116 1.94e-46 153
MsaG036641 MtrunA17_Chr5g0410961 66.667 105 35 0 14 118 12 116 3.31e-46 152
MsaG036641 MtrunA17_Chr2g0330041 59.483 116 45 1 1 116 1 114 6.28e-46 153
MsaG036641 MtrunA17_Chr8g0346561 62.162 111 42 0 14 124 12 122 8.56e-46 150
MsaG036641 MtrunA17_Chr2g0327821 60.577 104 41 0 13 116 5 108 1.22e-45 148
MsaG036641 MtrunA17_Chr4g0039971 63.551 107 39 0 14 120 13 119 1.40e-45 151
MsaG036641 MtrunA17_Chr2g0323411 64.762 105 37 0 14 118 12 116 1.95e-45 150
MsaG036641 MtrunA17_Chr8g0385321 61.017 118 44 1 1 118 1 116 4.44e-45 149
MsaG036641 MtrunA17_Chr1g0187761 55.200 125 55 1 14 138 12 135 6.48e-45 147
MsaG036641 MtrunA17_Chr4g0070641 52.593 135 62 1 1 135 1 133 8.05e-45 144
MsaG036641 MtrunA17_Chr1g0203411 56.198 121 51 1 1 121 1 119 9.13e-45 147
MsaG036641 MtrunA17_Chr8g0387421 57.500 120 49 1 1 120 1 118 1.16e-44 148
MsaG036641 MtrunA17_Chr5g0395281 58.407 113 47 0 8 120 6 118 1.61e-44 147
MsaG036641 MtrunA17_Chr1g0167661 54.400 125 57 0 14 138 12 136 2.07e-44 145
MsaG036641 MtrunA17_Chr8g0349261 63.208 106 38 1 14 118 13 118 2.18e-44 147
MsaG036641 MtrunA17_Chr4g0037141 57.364 129 42 1 16 131 14 142 3.09e-44 146
MsaG036641 MtrunA17_Chr1g0180391 60.748 107 42 0 13 119 18 124 4.04e-44 144
MsaG036641 MtrunA17_Chr3g0131121 60.169 118 45 1 1 118 1 116 4.24e-44 146
MsaG036641 MtrunA17_Chr4g0070611 62.385 109 41 0 14 122 12 120 4.55e-44 146
MsaG036641 MtrunA17_Chr1g0193371 57.025 121 50 1 1 121 1 119 7.17e-44 147
MsaG036641 MtrunA17_Chr3g0099131 55.556 117 52 0 13 129 40 156 8.69e-44 150
MsaG036641 MtrunA17_Chr1g0167691 60.952 105 41 0 14 118 12 116 1.21e-43 144
MsaG036641 MtrunA17_Chr7g0228891 61.321 106 41 0 14 119 12 117 1.35e-43 144
MsaG036641 MtrunA17_Chr2g0281071 62.857 105 39 0 14 118 13 117 1.42e-43 146
MsaG036641 MtrunA17_Chr7g0274581 56.881 109 47 0 14 122 12 120 1.58e-43 142
MsaG036641 MtrunA17_Chr7g0261281 61.682 107 41 0 14 120 12 118 1.91e-43 144
MsaG036641 MtrunA17_Chr8g0354661 62.136 103 39 0 14 116 37 139 2.02e-43 149
MsaG036641 MtrunA17_Chr3g0110351 60.748 107 42 0 14 120 12 118 2.79e-43 144
MsaG036641 MtrunA17_Chr4g0032401 58.879 107 44 0 14 120 17 123 3.25e-43 144
MsaG036641 MtrunA17_Chr5g0434571 60.748 107 42 0 14 120 48 154 3.85e-43 145
MsaG036641 MtrunA17_Chr5g0397231 59.821 112 43 1 1 112 1 110 4.04e-43 144
MsaG036641 MtrunA17_Chr4g0030881 58.716 109 38 1 15 116 8 116 4.40e-43 142
MsaG036641 MtrunA17_Chr5g0435101 51.515 132 59 2 3 131 2 131 5.47e-43 140
MsaG036641 MtrunA17_Chr4g0057031 61.905 105 40 0 14 118 12 116 8.54e-43 142
MsaG036641 MtrunA17_Chr2g0328771 55.752 113 50 0 14 126 20 132 1.60e-42 142
MsaG036641 MtrunA17_Chr8g0342541 55.932 118 50 1 1 118 1 116 2.13e-42 143
MsaG036641 MtrunA17_Chr4g0048511 61.905 105 40 0 14 118 13 117 2.26e-42 143
MsaG036641 MtrunA17_Chr3g0080861 58.252 103 43 0 14 116 37 139 2.39e-42 146
MsaG036641 MtrunA17_Chr7g0270891 55.833 120 51 1 1 120 1 118 2.45e-42 143
MsaG036641 MtrunA17_Chr3g0115821 58.879 107 44 0 14 120 12 118 2.63e-42 142
MsaG036641 MtrunA17_Chr7g0217741 60.952 105 41 0 14 118 12 116 2.96e-42 141
MsaG036641 MtrunA17_Chr4g0044421 56.780 118 49 1 1 118 1 116 3.25e-42 138
MsaG036641 MtrunA17_Chr1g0203441 54.237 118 54 0 12 129 11 128 4.50e-42 140
MsaG036641 MtrunA17_Chr3g0121241 60.952 105 41 0 14 118 42 146 4.65e-42 141
MsaG036641 MtrunA17_Chr2g0309911 56.637 113 47 1 6 118 5 115 6.12e-42 141
MsaG036641 MtrunA17_Chr7g0217221 53.043 115 54 0 14 128 12 126 8.67e-42 139
MsaG036641 MtrunA17_Chr1g0193801 55.000 120 52 1 1 120 1 118 1.07e-41 142
MsaG036641 MtrunA17_Chr8g0343831 59.259 108 44 0 13 120 7 114 1.15e-41 139
MsaG036641 MtrunA17_Chr4g0022931 56.522 115 50 0 14 128 13 127 1.22e-41 139
MsaG036641 MtrunA17_Chr8g0342521 55.932 118 50 1 1 118 1 116 1.27e-41 141
MsaG036641 MtrunA17_Chr3g0092401 57.009 107 46 0 14 120 13 119 3.02e-41 139
MsaG036641 MtrunA17_Chr1g0151941 57.547 106 44 1 14 118 12 117 3.39e-41 137
MsaG036641 MtrunA17_Chr1g0211161 56.637 113 47 1 6 118 7 117 4.06e-41 136
MsaG036641 MtrunA17_Chr6g0453211 56.522 115 50 0 14 128 12 126 4.29e-41 139
MsaG036641 MtrunA17_Chr1g0194951 60.000 105 42 0 14 118 12 116 4.79e-41 140
MsaG036641 MtrunA17_Chr1g0154031 61.165 103 40 0 14 116 76 178 4.85e-41 141
MsaG036641 MtrunA17_Chr6g0453471 58.879 107 44 0 14 120 12 118 5.36e-41 139
MsaG036641 MtrunA17_Chr3g0088461 56.604 106 46 0 14 119 22 127 5.83e-41 139
MsaG036641 MtrunA17_Chr6g0452271 57.547 106 45 0 13 118 11 116 5.90e-41 139
MsaG036641 MtrunA17_Chr7g0254411 55.140 107 48 0 14 120 12 118 6.43e-41 139
MsaG036641 MtrunA17_Chr2g0323351 55.556 126 49 2 14 138 12 131 9.40e-41 136
MsaG036641 MtrunA17_Chr4g0060721 53.153 111 52 0 14 124 13 123 1.26e-40 138
MsaG036641 MtrunA17_Chr4g0022901 62.136 103 39 0 14 116 13 115 1.41e-40 136
MsaG036641 MtrunA17_Chr3g0117091 55.085 118 51 1 1 118 1 116 2.38e-40 137
MsaG036641 MtrunA17_Chr7g0271241 59.459 111 43 1 1 111 1 109 2.91e-40 138
MsaG036641 MtrunA17_Chr4g0022911 61.165 103 40 0 14 116 13 115 4.32e-40 135
MsaG036641 MtrunA17_Chr4g0022881 54.783 115 52 0 14 128 12 126 7.52e-40 133
MsaG036641 MtrunA17_Chr4g0042671 60.000 105 42 0 14 118 12 116 8.07e-40 137
MsaG036641 MtrunA17_Chr2g0311221 58.879 107 41 1 6 112 9 112 1.59e-39 135
MsaG036641 MtrunA17_Chr4g0058631 57.143 105 45 0 14 118 12 116 3.34e-39 135
MsaG036641 MtrunA17_Chr8g0342481 54.386 114 51 1 14 126 12 125 4.25e-39 135
MsaG036641 MtrunA17_Chr4g0055981 56.303 119 48 2 14 128 55 173 7.25e-39 130
MsaG036641 MtrunA17_Chr2g0322521 57.018 114 45 1 7 116 18 131 4.43e-38 132
MsaG036641 MtrunA17_Chr7g0269831 61.905 105 40 0 14 118 12 116 4.65e-38 132
MsaG036641 MtrunA17_Chr6g0470971 50.833 120 59 0 10 129 10 129 1.69e-37 129
MsaG036641 MtrunA17_Chr4g0022891 56.863 102 44 0 14 115 12 113 3.11e-37 127
MsaG036641 MtrunA17_Chr3g0103281 53.774 106 49 0 13 118 11 116 5.21e-37 128
MsaG036641 MtrunA17_Chr4g0028311 57.692 104 43 1 14 116 12 115 8.51e-37 128
MsaG036641 MtrunA17_Chr3g0135311 56.075 107 46 1 13 118 11 117 1.73e-36 127
MsaG036641 MtrunA17_Chr5g0417821 56.190 105 46 0 14 118 7 111 1.96e-36 126
MsaG036641 MtrunA17_Chr2g0327351 59.406 101 40 1 13 112 11 111 2.05e-36 127
MsaG036641 MtrunA17_Chr1g0152011 52.101 119 56 1 13 130 11 129 2.97e-36 127
MsaG036641 MtrunA17_Chr5g0400821 55.140 107 47 1 13 118 11 117 3.51e-36 126
MsaG036641 MtrunA17_Chr1g0192411 53.774 106 49 0 14 119 12 117 1.49e-35 126
MsaG036641 MtrunA17_Chr7g0264641 52.212 113 53 1 13 124 11 123 4.05e-35 122
MsaG036641 MtrunA17_Chr7g0240821 49.573 117 59 0 19 135 6 122 1.24e-34 120
MsaG036641 MtrunA17_Chr5g0440781 51.429 105 50 1 13 116 11 115 1.41e-34 118
MsaG036641 MtrunA17_Chr5g0441131 49.123 114 57 1 7 119 2 115 1.73e-34 118
MsaG036641 MtrunA17_Chr4g0072751 57.426 101 42 1 13 112 11 111 2.56e-34 122
MsaG036641 MtrunA17_Chr4g0054391 57.576 99 41 1 13 110 11 109 5.45e-34 120
MsaG036641 MtrunA17_Chr8g0334881 51.485 101 48 1 14 113 10 110 7.85e-34 120
MsaG036641 MtrunA17_Chr5g0440761 51.429 105 50 1 13 116 11 115 1.87e-33 117
MsaG036641 MtrunA17_Chr5g0441141 51.429 105 50 1 13 116 11 115 2.12e-33 118
MsaG036641 MtrunA17_Chr6g0487491 49.180 122 53 2 14 126 12 133 9.82e-33 115
MsaG036641 MtrunA17_Chr8g0360111 54.455 101 46 0 14 114 25 125 1.12e-32 115
MsaG036641 MtrunA17_Chr7g0247131 65.333 75 26 0 46 120 10 84 1.27e-32 115
MsaG036641 MtrunA17_Chr5g0434831 51.429 105 51 0 14 118 7 111 1.59e-32 113
MsaG036641 MtrunA17_Chr4g0013361 42.742 124 67 2 14 133 10 133 1.93e-32 116
MsaG036641 MtrunA17_Chr5g0434931 52.427 103 49 0 14 116 35 137 3.03e-32 115
MsaG036641 MtrunA17_Chr3g0099141 52.941 85 40 0 11 95 37 121 3.56e-32 111
MsaG036641 MtrunA17_Chr5g0434911 51.429 105 51 0 14 118 21 125 9.40e-32 114
MsaG036641 MtrunA17_Chr7g0228991 51.429 105 51 0 14 118 29 133 2.79e-31 112
MsaG036641 MtrunA17_Chr7g0220341 46.774 124 62 2 14 133 25 148 4.61e-31 112
MsaG036641 MtrunA17_Chr5g0434841 50.476 105 52 0 14 118 20 124 1.85e-30 111
MsaG036641 MtrunA17_Chr2g0294811 59.259 81 33 0 14 94 12 92 3.60e-29 102
MsaG036641 MtrunA17_Chr6g0454921 49.515 103 51 1 13 115 12 113 2.52e-28 103
MsaG036641 MtrunA17_Chr8g0342531 51.648 91 42 1 1 91 1 89 1.01e-27 100
MsaG036641 MtrunA17_Chr4g0042611 58.442 77 32 0 14 90 12 88 1.41e-27 97.8
MsaG036641 MtrunA17_Chr8g0342511 51.685 89 41 1 1 89 1 87 1.57e-27 98.2
MsaG036641 MtrunA17_Chr2g0323321 53.409 88 41 0 7 94 4 91 1.99e-27 98.2
MsaG036641 MtrunA17_Chr5g0425591 49.451 91 45 1 7 96 2 92 3.66e-27 97.1
MsaG036641 MtrunA17_Chr7g0238631 45.370 108 58 1 11 118 108 214 1.22e-26 103
MsaG036641 MtrunA17_Chr7g0238631 37.736 106 64 2 16 120 61 165 3.74e-12 62.4
MsaG036641 MtrunA17_Chr4g0008551 47.525 101 52 1 16 116 38 137 1.49e-26 101
MsaG036641 MtrunA17_Chr5g0395221 54.545 77 35 0 14 90 12 88 2.74e-26 94.7
MsaG036641 MtrunA17_Chr5g0401731 48.515 101 51 1 16 116 15 114 2.90e-26 100
MsaG036641 MtrunA17_Chr8g0342461 51.087 92 42 2 1 91 1 90 4.17e-26 95.9
MsaG036641 MtrunA17_Chr3g0133601 45.545 101 54 1 16 116 37 136 7.53e-26 97.4
MsaG036641 MtrunA17_Chr8g0342471 51.087 92 42 2 1 91 1 90 9.51e-26 94.7
MsaG036641 MtrunA17_Chr5g0429661 42.623 122 68 2 16 137 122 241 1.87e-25 99.0
MsaG036641 MtrunA17_Chr3g0139671 40.741 108 63 1 11 118 80 186 2.85e-25 100
MsaG036641 MtrunA17_Chr4g0053431 47.525 101 52 1 16 116 5 104 3.49e-25 96.7
MsaG036641 MtrunA17_Chr1g0157731 40.741 108 63 1 11 118 86 192 8.92e-25 98.6
MsaG036641 MtrunA17_Chr6g0460661 44.330 97 53 1 16 112 16 111 1.11e-24 92.8
MsaG036641 MtrunA17_Chr3g0117511 45.263 95 51 1 16 110 183 276 5.04e-23 93.2
MsaG036641 MtrunA17_Chr5g0437321 44.118 102 56 1 13 114 16 116 8.16e-23 90.9
MsaG036641 MtrunA17_Chr4g0058991 46.939 98 49 2 14 110 207 302 1.03e-22 92.4
MsaG036641 MtrunA17_Chr6g0480581 42.574 101 57 1 16 116 4 103 1.52e-22 89.0
MsaG036641 MtrunA17_Chr6g0453751 48.352 91 38 2 14 95 20 110 5.93e-22 84.7
MsaG036641 MtrunA17_Chr5g0417621 37.190 121 75 1 4 124 122 241 1.55e-21 89.0
MsaG036641 MtrunA17_Chr7g0229101 55.714 70 31 0 46 115 4 73 1.70e-21 85.5
MsaG036641 MtrunA17_Chr7g0228531 44.660 103 55 2 10 112 214 314 4.96e-21 87.4
MsaG036641 MtrunA17_Chr7g0238651 38.889 108 64 1 19 124 10 117 1.04e-20 85.9
MsaG036641 MtrunA17_Chr5g0434901 55.882 68 30 0 48 115 7 74 1.12e-20 81.3
MsaG036641 MtrunA17_Chr3g0093811 50.667 75 37 0 46 120 14 88 1.27e-20 84.3
MsaG036641 MtrunA17_Chr4g0042501 34.848 132 79 2 4 135 93 217 2.04e-20 85.5
MsaG036641 MtrunA17_Chr7g0229131 49.315 73 37 0 46 118 4 76 3.63e-20 81.3
MsaG036641 MtrunA17_Chr8g0362231 42.202 109 62 1 19 127 25 132 3.92e-20 85.1
MsaG036641 MtrunA17_Chr5g0416341 43.564 101 56 1 19 119 29 128 5.31e-20 84.7
MsaG036641 MtrunA17_Chr5g0397841 43.878 98 54 1 13 110 107 203 1.08e-19 84.0
MsaG036641 MtrunA17_Chr5g0397841 33.333 117 75 2 15 128 54 170 1.65e-11 60.5
MsaG036641 MtrunA17_Chr1g0177901 44.318 88 48 1 25 112 3 89 7.64e-19 79.0
MsaG036641 MtrunA17_Chr7g0228401 44.318 88 48 1 25 112 288 374 1.34e-18 80.9
MsaG036641 MtrunA17_Chr3g0125801 37.600 125 75 2 1 125 1 122 1.58e-18 79.3
MsaG036641 MtrunA17_Chr6g0460671 40.206 97 57 1 16 112 99 194 6.36e-18 78.2
MsaG036641 MtrunA17_Chr7g0254261 40.206 97 57 1 16 112 89 184 2.93e-17 76.6
MsaG036641 MtrunA17_Chr7g0228481 40.594 101 58 2 10 110 214 312 4.06e-17 76.3
MsaG036641 MtrunA17_Chr7g0233061 43.000 100 48 3 16 112 180 273 4.58e-17 75.9
MsaG036641 MtrunA17_Chr1g0193901 45.055 91 48 2 7 95 4 94 1.07e-15 68.2
MsaG036641 MtrunA17_Chr1g0193891 45.055 91 48 2 7 95 4 94 1.07e-15 68.2
MsaG036641 MtrunA17_Chr1g0193871 45.055 91 48 2 7 95 4 94 1.07e-15 68.2
MsaG036641 MtrunA17_Chr1g0193881 45.055 91 48 2 7 95 4 94 1.07e-15 68.2
MsaG036641 MtrunA17_Chr6g0483051 31.579 114 76 2 9 122 62 173 1.27e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036641 AT3G27810.1 85.833 120 17 0 11 130 17 136 6.49e-76 225
MsaG036641 AT5G40350.1 86.777 121 13 1 1 118 1 121 1.06e-73 219
MsaG036641 AT3G01530.1 76.000 125 29 1 10 133 21 145 2.35e-68 205
MsaG036641 AT1G68320.1 67.460 126 41 0 11 136 16 141 9.84e-63 194
MsaG036641 AT1G25340.1 70.588 119 34 1 3 120 6 124 3.93e-61 189
MsaG036641 AT1G48000.1 68.548 124 38 1 13 136 31 153 1.65e-60 186
MsaG036641 AT2G47190.1 73.874 111 29 0 10 120 16 126 9.87e-60 186
MsaG036641 AT5G49620.1 76.378 127 29 1 10 136 22 147 7.74e-59 184
MsaG036641 AT3G06490.1 73.387 124 32 1 13 136 18 140 6.97e-56 177
MsaG036641 AT1G25340.2 67.227 119 33 2 3 120 6 119 1.03e-55 176
MsaG036641 AT1G25340.3 66.116 121 35 2 1 120 4 119 1.83e-55 176
MsaG036641 AT5G49620.2 68.794 141 29 2 10 136 22 161 4.20e-55 175
MsaG036641 AT3G24310.1 70.909 110 32 0 15 124 19 128 4.49e-54 171
MsaG036641 AT4G13480.1 70.000 110 33 0 15 124 7 116 7.93e-53 167
MsaG036641 AT3G30210.1 58.400 125 48 1 14 138 27 147 3.14e-50 161
MsaG036641 AT3G27810.2 84.524 84 13 0 47 130 4 87 5.36e-50 157
MsaG036641 AT5G59780.3 58.772 114 47 0 13 126 7 120 6.10e-48 154
MsaG036641 AT3G46130.1 60.360 111 44 0 10 120 5 115 1.62e-47 154
MsaG036641 AT5G40350.2 93.056 72 5 0 47 118 5 76 2.82e-46 148
MsaG036641 AT3G02940.2 65.421 107 37 0 14 120 12 118 4.72e-46 152
MsaG036641 AT3G02940.1 65.421 107 37 0 14 120 12 118 7.08e-46 151
MsaG036641 AT3G02940.3 65.421 107 37 0 14 120 12 118 7.08e-46 151
MsaG036641 AT1G06180.1 57.025 121 52 0 14 134 12 132 1.02e-45 149
MsaG036641 AT2G47460.1 64.762 105 37 0 14 118 12 116 1.23e-45 152
MsaG036641 AT3G13890.2 58.621 116 46 1 1 116 1 114 1.25e-45 152
MsaG036641 AT1G16490.1 57.025 121 52 0 14 134 14 134 1.37e-45 149
MsaG036641 AT1G09540.1 59.167 120 47 1 1 120 1 118 2.12e-45 151
MsaG036641 AT5G14750.1 54.198 131 57 1 3 130 2 132 2.42e-45 147
MsaG036641 AT1G22640.1 63.810 105 38 0 14 118 12 116 3.15e-45 148
MsaG036641 AT4G09460.1 66.019 103 35 0 16 118 14 116 4.29e-45 147
MsaG036641 AT2G31180.1 57.500 120 51 0 14 133 12 131 4.51e-45 147
MsaG036641 AT1G35515.1 63.810 105 38 0 14 118 12 116 1.18e-44 145
MsaG036641 AT1G63910.1 55.039 129 56 1 1 129 1 127 1.83e-44 149
MsaG036641 AT4G34990.1 66.019 103 35 0 16 118 14 116 1.92e-44 146
MsaG036641 AT5G40330.1 57.018 114 49 0 13 126 11 124 1.97e-44 145
MsaG036641 AT1G57560.2 59.322 118 46 1 1 118 1 116 2.90e-44 146
MsaG036641 AT1G57560.1 59.322 118 46 1 1 118 1 116 2.91e-44 147
MsaG036641 AT5G16770.4 62.617 107 40 0 14 120 12 118 3.80e-44 147
MsaG036641 AT5G16770.3 62.617 107 40 0 14 120 12 118 3.80e-44 147
MsaG036641 AT4G38620.1 66.019 103 35 0 16 118 14 116 3.91e-44 146
MsaG036641 AT5G16770.1 62.617 107 40 0 14 120 12 118 5.87e-44 147
MsaG036641 AT5G16770.2 62.617 107 40 0 14 120 12 118 5.87e-44 147
MsaG036641 AT2G16720.1 62.857 105 39 0 14 118 12 116 7.50e-44 145
MsaG036641 AT4G12350.1 59.483 116 47 0 14 129 12 127 8.43e-44 145
MsaG036641 AT5G65230.1 59.292 113 46 0 8 120 6 118 8.64e-44 146
MsaG036641 AT5G54230.1 63.810 105 38 0 14 118 12 116 9.59e-44 146
MsaG036641 AT3G62610.1 61.905 105 40 0 14 118 12 116 1.15e-43 146
MsaG036641 AT3G23250.1 54.400 125 56 1 14 137 12 136 1.15e-43 145
MsaG036641 AT5G26660.1 57.143 119 49 1 1 119 1 117 1.43e-43 146
MsaG036641 AT3G11440.2 60.194 103 41 0 14 116 41 143 2.07e-43 148
MsaG036641 AT4G28110.1 62.857 105 39 0 14 118 12 116 2.17e-43 144
MsaG036641 AT5G10280.1 56.250 112 49 0 9 120 7 118 3.43e-43 145
MsaG036641 AT5G06100.1 61.165 103 40 0 14 116 32 134 3.58e-43 147
MsaG036641 AT3G01140.2 62.857 105 39 0 14 118 12 116 4.33e-43 145
MsaG036641 AT3G27920.1 52.893 121 57 0 10 130 10 130 4.65e-43 142
MsaG036641 AT4G22680.1 61.905 105 40 0 14 118 12 116 4.80e-43 143
MsaG036641 AT3G13540.1 57.759 116 48 1 14 128 23 138 5.24e-43 142
MsaG036641 AT1G79180.1 59.259 108 44 0 14 121 14 121 5.95e-43 143
MsaG036641 AT4G17785.2 59.167 120 48 1 1 120 1 119 5.97e-43 145
MsaG036641 AT5G15310.4 61.905 105 40 0 14 118 12 116 7.63e-43 142
MsaG036641 AT4G17785.1 59.167 120 48 1 1 120 1 119 8.31e-43 144
MsaG036641 AT2G32460.2 59.223 103 42 0 14 116 6 108 8.58e-43 147
MsaG036641 AT4G05100.1 62.857 105 39 0 14 118 13 117 8.91e-43 144
MsaG036641 AT5G60890.1 61.682 107 41 0 14 120 12 118 9.18e-43 143
MsaG036641 AT5G07690.1 57.759 116 47 1 1 116 1 114 9.41e-43 144
MsaG036641 AT2G32460.1 59.223 103 42 0 14 116 18 120 9.80e-43 147
MsaG036641 AT4G21440.1 60.952 105 41 0 14 118 12 116 1.08e-42 144
MsaG036641 AT3G01140.1 62.857 105 39 0 14 118 55 159 1.11e-42 145
MsaG036641 AT3G13890.1 54.400 125 46 2 1 116 1 123 1.13e-42 144
MsaG036641 AT5G61420.2 55.000 120 52 1 1 120 1 118 1.25e-42 144
MsaG036641 AT5G06100.5 61.165 103 40 0 14 116 32 134 1.34e-42 147
MsaG036641 AT5G06100.2 61.165 103 40 0 14 116 32 134 1.34e-42 147
MsaG036641 AT5G06100.3 61.165 103 40 0 14 116 32 134 1.34e-42 147
MsaG036641 AT5G06100.4 61.165 103 40 0 14 116 32 134 1.34e-42 147
MsaG036641 AT3G11440.3 60.194 103 41 0 14 116 41 143 1.39e-42 147
MsaG036641 AT3G11440.4 60.194 103 41 0 14 116 41 143 1.39e-42 147
MsaG036641 AT3G11440.1 60.194 103 41 0 14 116 41 143 1.39e-42 147
MsaG036641 AT5G15310.1 61.905 105 40 0 14 118 12 116 1.85e-42 143
MsaG036641 AT5G15310.2 61.905 105 40 0 14 118 12 116 2.08e-42 142
MsaG036641 AT5G12870.1 53.390 118 55 0 7 124 11 128 2.12e-42 141
MsaG036641 AT5G07700.1 60.000 105 42 0 14 118 12 116 2.17e-42 143
MsaG036641 AT5G07700.2 60.000 105 42 0 14 118 12 116 2.17e-42 143
MsaG036641 AT5G35550.1 53.600 125 58 0 1 125 1 125 2.89e-42 140
MsaG036641 AT5G49330.1 61.905 105 40 0 14 118 12 116 2.90e-42 143
MsaG036641 AT5G16600.1 59.813 107 43 0 14 120 12 118 2.97e-42 142
MsaG036641 AT1G66230.1 57.407 108 46 0 14 121 12 119 3.02e-42 141
MsaG036641 AT1G08810.1 53.571 112 52 0 14 125 12 123 6.88e-42 140
MsaG036641 AT4G01680.3 55.462 119 51 1 1 119 1 117 8.33e-42 139
MsaG036641 AT4G26930.1 56.481 108 47 0 14 121 19 126 1.24e-41 142
MsaG036641 AT5G52600.1 56.140 114 46 1 14 127 12 121 1.25e-41 137
MsaG036641 AT3G47600.1 55.856 111 49 0 14 124 12 122 1.25e-41 141
MsaG036641 AT3G61250.1 59.048 105 43 0 14 118 12 116 1.57e-41 140
MsaG036641 AT1G18570.1 55.556 126 55 1 14 138 13 138 1.74e-41 141
MsaG036641 AT5G14340.1 58.879 107 44 0 14 120 24 130 2.01e-41 139
MsaG036641 AT3G53200.1 57.018 114 48 1 10 123 5 117 2.98e-41 137
MsaG036641 AT3G08500.1 56.481 108 47 0 12 119 28 135 3.65e-41 140
MsaG036641 AT1G56160.1 60.000 105 42 0 14 118 14 118 3.85e-41 139
MsaG036641 AT5G62470.2 55.856 111 49 0 14 124 12 122 4.32e-41 140
MsaG036641 AT5G55020.1 55.556 108 48 0 14 121 26 133 4.89e-41 143
MsaG036641 AT4G01680.1 55.462 119 51 1 1 119 1 117 5.43e-41 139
MsaG036641 AT1G34670.1 58.879 107 44 0 14 120 12 118 8.98e-41 139
MsaG036641 AT3G28910.1 53.043 115 54 0 14 128 12 126 9.02e-41 138
MsaG036641 AT1G74650.1 57.547 106 45 0 13 118 11 116 1.25e-40 138
MsaG036641 AT3G12720.1 57.143 105 45 0 14 118 22 126 1.69e-40 137
MsaG036641 AT2G26960.1 50.000 118 55 1 3 116 5 122 8.24e-40 138
MsaG036641 AT1G74430.1 57.944 107 45 0 14 120 12 118 1.04e-39 134
MsaG036641 AT1G74080.1 60.194 103 41 0 14 116 12 114 4.10e-39 134
MsaG036641 AT5G62470.1 55.856 111 48 1 14 124 12 121 4.13e-39 135
MsaG036641 AT5G62320.1 56.250 112 42 1 14 118 13 124 8.60e-39 131
MsaG036641 AT4G37780.1 58.654 104 42 1 14 116 12 115 2.31e-38 132
MsaG036641 AT3G12820.1 55.752 113 47 1 6 118 9 118 6.91e-38 129
MsaG036641 AT4G01680.2 50.382 131 51 2 1 119 1 129 1.75e-37 130
MsaG036641 AT3G49690.1 52.991 117 54 1 13 128 11 127 6.79e-37 128
MsaG036641 AT5G56110.1 54.808 104 47 0 13 116 11 114 1.59e-36 127
MsaG036641 AT5G65790.1 51.240 121 58 1 13 132 11 131 2.18e-36 128
MsaG036641 AT5G23000.1 55.660 106 46 1 14 118 12 117 2.83e-36 127
MsaG036641 AT1G79180.2 45.390 141 44 1 14 121 14 154 2.96e-36 127
MsaG036641 AT1G18710.1 56.190 105 46 0 14 118 12 116 5.40e-36 125
MsaG036641 AT5G57620.1 54.206 107 48 1 13 118 11 117 6.37e-36 126
MsaG036641 AT4G25560.1 53.922 102 47 0 15 116 11 112 8.30e-36 124
MsaG036641 AT3G28470.1 56.000 100 44 0 13 112 11 110 8.96e-36 125
MsaG036641 AT2G36890.1 56.075 107 46 1 13 118 11 117 1.11e-35 124
MsaG036641 AT2G36890.2 56.075 107 46 1 13 118 52 158 1.52e-35 125
MsaG036641 AT3G48920.1 47.414 116 59 1 15 128 19 134 2.16e-35 123
MsaG036641 AT3G46130.3 68.421 76 24 0 45 120 8 83 4.07e-35 121
MsaG036641 AT5G52260.1 54.902 102 46 0 15 116 13 114 4.12e-35 122
MsaG036641 AT5G59780.2 66.250 80 27 0 47 126 20 99 6.17e-35 120
MsaG036641 AT3G46130.4 70.270 74 22 0 47 120 20 93 1.49e-34 120
MsaG036641 AT1G66370.1 52.427 103 49 0 14 116 8 110 3.81e-33 117
MsaG036641 AT3G60460.1 48.039 102 52 1 13 113 10 111 4.21e-33 118
MsaG036641 AT3G53200.2 64.935 77 26 1 47 123 9 84 2.94e-31 111
MsaG036641 AT1G66380.1 53.398 103 48 0 14 116 8 110 1.37e-30 107
MsaG036641 AT5G26660.2 64.384 73 26 0 47 119 14 86 6.68e-30 110
MsaG036641 AT1G56650.1 53.398 103 48 0 14 116 8 110 1.56e-29 107
MsaG036641 AT5G35550.2 59.524 84 34 0 42 125 45 128 4.34e-29 107
MsaG036641 AT1G66390.1 53.398 103 48 0 14 116 8 110 1.08e-28 105
MsaG036641 AT2G26950.1 45.918 98 53 0 16 113 18 115 1.17e-28 108
MsaG036641 AT5G14750.3 52.128 94 40 1 42 130 5 98 2.69e-28 102
MsaG036641 AT3G12820.2 63.768 69 25 0 50 118 2 70 3.53e-27 100
MsaG036641 AT3G47600.2 56.410 78 34 0 47 124 39 116 9.12e-27 102
MsaG036641 AT3G09370.1 44.340 106 58 1 11 116 125 229 8.59e-26 101
MsaG036641 AT3G09370.1 37.500 104 63 2 16 118 78 180 9.45e-11 58.5
MsaG036641 AT3G09370.3 44.340 106 58 1 11 116 138 242 9.02e-26 101
MsaG036641 AT3G09370.3 37.500 104 63 2 16 118 91 193 9.22e-11 58.9
MsaG036641 AT3G09370.2 44.340 106 58 1 11 116 130 234 9.03e-26 101
MsaG036641 AT5G11510.5 42.593 108 61 1 11 118 76 182 1.20e-25 101
MsaG036641 AT3G27785.1 44.762 105 57 1 6 110 179 282 1.23e-25 100
MsaG036641 AT5G02320.1 43.119 109 61 1 11 119 122 229 1.31e-25 101
MsaG036641 AT5G02320.2 43.119 109 61 1 11 119 122 229 1.31e-25 101
MsaG036641 AT5G11510.3 42.593 108 61 1 11 118 76 182 1.35e-25 101
MsaG036641 AT5G11510.1 42.593 108 61 1 11 118 76 182 1.35e-25 101
MsaG036641 AT5G11510.4 42.593 108 61 1 11 118 76 182 1.35e-25 101
MsaG036641 AT5G11510.2 42.593 108 61 1 11 118 76 182 1.36e-25 101
MsaG036641 AT5G02320.3 43.119 109 61 1 11 119 62 169 1.51e-25 100
MsaG036641 AT2G23290.1 45.455 110 59 1 7 116 4 112 1.69e-25 98.6
MsaG036641 AT3G09230.1 44.248 113 62 1 13 125 52 163 2.68e-24 96.7
MsaG036641 AT4G37260.1 45.545 101 54 1 16 116 13 112 5.65e-24 94.7
MsaG036641 AT4G18770.1 47.368 95 49 1 16 110 217 310 7.66e-24 95.5
MsaG036641 AT3G50060.1 43.269 104 58 1 13 116 3 105 9.03e-24 94.0
MsaG036641 AT4G32730.1 38.889 108 65 1 11 118 82 188 9.19e-24 95.9
MsaG036641 AT4G32730.5 38.889 108 65 1 11 118 82 188 9.79e-24 95.9
MsaG036641 AT4G32730.4 38.889 108 65 1 11 118 82 188 9.79e-24 95.9
MsaG036641 AT4G32730.3 38.889 108 65 1 11 118 82 188 9.79e-24 95.9
MsaG036641 AT4G32730.2 38.889 108 65 1 11 118 82 188 9.79e-24 95.9
MsaG036641 AT3G55730.1 46.078 102 52 2 16 116 56 155 3.75e-23 93.6
MsaG036641 AT5G58850.1 46.316 95 50 1 16 110 105 198 5.16e-23 93.2
MsaG036641 AT3G29020.1 38.655 119 70 2 16 134 65 180 9.14e-23 89.7
MsaG036641 AT1G69560.1 37.190 121 75 1 4 124 95 214 1.26e-22 91.3
MsaG036641 AT5G11050.1 43.878 98 54 1 13 110 102 198 1.34e-22 92.0
MsaG036641 AT1G69560.2 37.190 121 75 1 4 124 111 230 1.63e-22 91.3
MsaG036641 AT2G39880.1 44.554 101 55 1 16 116 50 149 3.15e-22 90.5
MsaG036641 AT3G29020.2 38.655 119 70 2 16 134 67 182 3.20e-22 89.7
MsaG036641 AT5G67300.1 43.269 104 58 1 13 116 3 105 8.49e-22 88.6
MsaG036641 AT5G40360.1 43.299 97 54 1 14 110 156 251 1.32e-21 89.0
MsaG036641 AT1G22640.3 64.407 59 21 0 60 118 1 59 2.60e-21 85.5
MsaG036641 AT5G17800.1 36.607 112 70 1 16 127 93 203 8.86e-21 86.3
MsaG036641 AT4G00540.2 38.938 113 65 2 11 120 98 209 1.24e-20 86.7
MsaG036641 AT3G23250.2 60.000 60 24 0 60 119 1 60 1.45e-20 84.0
MsaG036641 AT1G17950.1 37.815 119 73 1 16 134 5 122 1.57e-20 84.3
MsaG036641 AT4G00540.1 38.938 113 65 2 11 120 96 207 1.98e-20 86.3
MsaG036641 AT5G14750.4 52.113 71 34 0 60 130 1 71 2.31e-20 81.3
MsaG036641 AT5G14750.2 52.113 71 34 0 60 130 1 71 2.31e-20 81.3
MsaG036641 AT1G66380.3 53.947 76 35 0 41 116 2 77 2.82e-20 80.1
MsaG036641 AT1G14350.2 43.564 101 56 1 19 119 28 127 4.85e-20 85.1
MsaG036641 AT1G14350.1 43.564 101 56 1 19 119 28 127 4.85e-20 85.1
MsaG036641 AT5G59780.1 69.388 49 15 0 72 120 1 49 7.13e-20 80.9
MsaG036641 AT1G26780.1 39.604 101 60 1 16 116 98 197 7.37e-20 83.2
MsaG036641 AT2G25230.1 42.000 100 57 1 13 112 23 121 1.02e-19 82.0
MsaG036641 AT3G46130.2 69.388 49 15 0 72 120 1 49 1.28e-19 80.9
MsaG036641 AT1G26780.2 39.604 101 60 1 16 116 98 197 1.53e-19 83.2
MsaG036641 AT1G73410.1 41.667 108 60 2 16 122 6 111 2.70e-19 80.9
MsaG036641 AT2G37630.1 37.963 108 65 1 19 124 7 114 3.02e-19 82.4
MsaG036641 AT4G33450.1 38.938 113 65 2 1 110 1 112 3.24e-19 80.9
MsaG036641 AT1G73410.2 41.667 108 60 2 16 122 6 111 3.84e-19 79.7
MsaG036641 AT5G39700.1 38.182 110 67 1 15 124 55 163 5.26e-19 79.0
MsaG036641 AT1G18960.1 36.752 117 66 3 4 120 3 111 2.46e-18 79.3
MsaG036641 AT1G66380.2 43.299 97 54 1 14 109 8 104 2.59e-18 75.1
MsaG036641 AT2G02820.3 42.574 101 57 1 19 119 33 132 4.09e-18 79.0
MsaG036641 AT1G71030.1 47.368 76 39 1 41 116 8 82 8.01e-18 76.3
MsaG036641 AT1G71030.2 53.125 64 30 0 53 116 5 68 9.19e-18 75.5
MsaG036641 AT2G02820.1 42.574 101 57 1 19 119 33 132 9.97e-18 78.6
MsaG036641 AT2G02820.2 42.574 101 57 1 19 119 33 132 1.02e-17 78.6
MsaG036641 AT5G40430.1 38.596 114 65 3 2 112 37 148 1.38e-16 73.9
MsaG036641 AT4G25560.2 57.778 45 19 0 72 116 2 46 4.58e-13 63.9
MsaG036641 AT1G14350.3 46.774 62 33 0 58 119 23 84 7.90e-13 64.7
MsaG036641 AT1G14350.4 46.774 62 33 0 58 119 23 84 7.90e-13 64.7
MsaG036641 AT3G18100.4 38.462 104 62 2 14 117 383 484 1.14e-12 64.3
MsaG036641 AT3G18100.2 38.462 104 62 2 14 117 331 432 1.33e-12 63.9
MsaG036641 AT3G18100.3 38.462 104 62 2 14 117 496 597 1.36e-12 63.9
MsaG036641 AT3G18100.1 38.462 104 62 2 14 117 544 645 1.37e-12 63.9
MsaG036641 AT1G16490.2 52.632 57 25 1 78 134 11 65 3.75e-11 58.5
MsaG036641 AT5G61420.1 63.158 38 14 0 83 120 2 39 6.61e-11 58.9

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTGCTTGATATGCTTT+TGG 0.184260 7:-40062436 None:intergenic
CCGAAGCCTGCAACTCTTTC+CGG 0.204393 7:-40057461 None:intergenic
GTAGTTCTTTATCTCATTAT+CGG 0.309254 7:-40062399 None:intergenic
CCAAACACCTTCACCATGAT+TGG 0.346620 7:-40057203 None:intergenic
CCAATCATGGTGAAGGTGTT+TGG 0.360993 7:+40057203 MsaT036641.1:CDS
AACGTACCGGAAAGAGTTGC+AGG 0.368952 7:+40057455 MsaT036641.1:CDS
TTCATGCTAAGTGGGGAAAC+AGG 0.422675 7:+40057557 MsaT036641.1:CDS
ATCAACTATATTGCCAATCA+TGG 0.459614 7:+40057190 MsaT036641.1:CDS
CCGGAAAGAGTTGCAGGCTT+CGG 0.464657 7:+40057461 MsaT036641.1:CDS
GAAAATCGCGAAACATTTAC+CGG 0.464673 7:+40062370 MsaT036641.1:CDS
CATGGTCCCTTTCGTACATC+AGG 0.468269 7:-40057142 None:intergenic
ATAATGAGATAAAGAACTAC+TGG 0.481229 7:+40062402 MsaT036641.1:CDS
CATTGAACTTCATGCTAAGT+GGG 0.494832 7:+40057549 MsaT036641.1:CDS
CTTTCAATATCAGGCTTCAA+AGG 0.501139 7:+40066509 MsaT036641.1:intron
ATATTCCCTCGTCTAACATC+AGG 0.503266 7:-40057502 None:intergenic
AACTCCTTGGCTAAATCTGC+TGG 0.506754 7:+40057226 MsaT036641.1:CDS
ATGATCAAGAGTTGTTCCTC+AGG 0.507271 7:-40057529 None:intergenic
AAGTCTTCTTCCATTGTCCA+TGG 0.510332 7:-40057160 None:intergenic
TCATTGAACTTCATGCTAAG+TGG 0.536877 7:+40057548 MsaT036641.1:CDS
ATCTCATTATCGGTTCTCCC+CGG 0.551091 7:-40062389 None:intergenic
TGAAGGTGTTTGGAACTCCT+TGG 0.569511 7:+40057213 MsaT036641.1:CDS
CAAGATCCTGATGTACGAAA+GGG 0.574930 7:+40057136 MsaT036641.1:CDS
GAAAGAGTTGCAGGCTTCGG+TGG 0.580113 7:+40057464 MsaT036641.1:CDS
TATATTGCCAATCATGGTGA+AGG 0.589500 7:+40057196 MsaT036641.1:CDS
ACAAGATCCTGATGTACGAA+AGG 0.594892 7:+40057135 MsaT036641.1:CDS
AACTCTCAATCTCAAGAACA+AGG 0.607217 7:+40062461 MsaT036641.1:CDS
TAAAGAACTACTGGAGGACA+AGG 0.615004 7:+40062411 MsaT036641.1:CDS
CTTCGACCTGATGTTAGACG+AGG 0.623587 7:+40057496 MsaT036641.1:CDS
CTGATGTACGAAAGGGACCA+TGG 0.624475 7:+40057143 MsaT036641.1:CDS
ATTACCAGCAGATTTAGCCA+AGG 0.626193 7:-40057230 None:intergenic
AAAATCGCGAAACATTTACC+GGG 0.627319 7:+40062371 MsaT036641.1:CDS
ACGAAAGGGACCATGGACAA+TGG 0.642783 7:+40057150 MsaT036641.1:CDS
TATCAGGCTTCAAAGGAACA+AGG 0.645957 7:+40066516 MsaT036641.1:intron
ATGAGATAAAGAACTACTGG+AGG 0.648874 7:+40062405 MsaT036641.1:CDS
TTCGACCTGATGTTAGACGA+GGG 0.661220 7:+40057497 MsaT036641.1:CDS
ATTGAACTTCATGCTAAGTG+GGG 0.662589 7:+40057550 MsaT036641.1:CDS
ACGAGGGAATATTACACCTG+AGG 0.692927 7:+40057513 MsaT036641.1:CDS
AAATCGCGAAACATTTACCG+GGG 0.720551 7:+40062372 MsaT036641.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 40057109 40066550 40057109 ID=MsaG036641
Chr7 mRNA 40057109 40066550 40057109 ID=MsaT036641.1;Parent=MsaG036641
Chr7 exon 40057109 40057247 40057109 ID=MsaT036641.1.exon1;Parent=MsaT036641.1
Chr7 CDS 40057109 40057247 40057109 ID=cds.MsaT036641.1;Parent=MsaT036641.1
Chr7 exon 40057449 40057578 40057449 ID=MsaT036641.1.exon2;Parent=MsaT036641.1
Chr7 CDS 40057449 40057578 40057449 ID=cds.MsaT036641.1;Parent=MsaT036641.1
Chr7 exon 40062364 40062482 40062364 ID=MsaT036641.1.exon3;Parent=MsaT036641.1
Chr7 CDS 40062364 40062482 40062364 ID=cds.MsaT036641.1;Parent=MsaT036641.1
Chr7 exon 40066522 40066550 40066522 ID=MsaT036641.1.exon4;Parent=MsaT036641.1
Chr7 CDS 40066522 40066550 40066522 ID=cds.MsaT036641.1;Parent=MsaT036641.1
Gene Sequence

>MsaT036641.1

ATGGACAAAAAAGAGTGCAGTTCTTCACAAGATCCTGATGTACGAAAGGGACCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCCAATCATGGTGAAGGTGTTTGGAACTCCTTGGCTAAATCTGCTGGTCTTAAACGTACCGGAAAGAGTTGCAGGCTTCGGTGGCTAAACTATCTTCGACCTGATGTTAGACGAGGGAATATTACACCTGAGGAACAACTCTTGATCATTGAACTTCATGCTAAGTGGGGAAACAGGTGGTCGAAAATCGCGAAACATTTACCGGGGAGAACCGATAATGAGATAAAGAACTACTGGAGGACAAGGATCCAAAAGCATATCAAGCAAGCTGAAAACTCTCAATCTCAAGAACAAGGCTTCAAAGGAACAAGGAAAAAGAAATAA
Protein sequence

>MsaT036641.1

MDKKECSSSQDPDVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENSQSQEQGFKGTRKKK*