AlfalfaGEDB | MsaG036660

M. sativa ssp. caerulea / MsaG036660

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042304 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036660	KEH22261.1	89.418	189	12	1	1	181	17	205	5.17e-119	346

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036660	sp\|Q9S7L2\|MYB98_ARATH	40.000	115	57	3	46	148	211	325	1.25e-19	88.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036660	tr\|A0A072TYJ9\|A0A072TYJ9_MEDTR	89.418	189	12	1	1	181	17	205	2.47e-119	346

TFs/TRs:

Gene ID	Type	Classification
MsaG036660	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036660	MtrunA17_Chr7g0228531	44.175	206	64	6	26	181	194	398	2.49e-41	144
MsaG036660	MtrunA17_Chr7g0228481	44.660	206	63	6	26	181	194	398	8.51e-39	137
MsaG036660	MtrunA17_Chr7g0233061	37.629	194	81	5	21	174	148	341	4.32e-21	88.6
MsaG036660	MtrunA17_Chr3g0117511	45.283	106	46	3	54	147	185	290	1.46e-20	87.8
MsaG036660	MtrunA17_Chr1g0177901	33.929	168	58	3	67	181	20	187	2.61e-20	84.0
MsaG036660	MtrunA17_Chr7g0233151	40.323	124	36	2	96	181	7	130	5.93e-20	82.0
MsaG036660	MtrunA17_Chr7g0228401	34.810	158	50	3	77	181	315	472	5.01e-19	83.6
MsaG036660	MtrunA17_Chr4g0058991	38.261	115	59	3	46	148	203	317	1.09e-18	82.4
MsaG036660	MtrunA17_Chr5g0429661	31.707	164	90	5	12	158	77	235	2.62e-18	80.9
MsaG036660	MtrunA17_Chr6g0460661	38.614	101	52	3	75	169	50	146	5.03e-15	68.9
MsaG036660	MtrunA17_Chr5g0397841	40.860	93	43	3	54	134	112	204	6.68e-15	71.6
MsaG036660	MtrunA17_Chr4g0008551	38.261	115	51	5	55	149	41	155	1.33e-14	70.5
MsaG036660	MtrunA17_Chr7g0238631	41.935	93	42	3	55	135	116	208	7.30e-14	68.9
MsaG036660	MtrunA17_Chr1g0157731	32.174	115	65	4	55	156	94	208	2.52e-13	67.4
MsaG036660	MtrunA17_Chr3g0139671	33.913	115	63	4	55	156	88	202	6.48e-13	66.2
MsaG036660	MtrunA17_Chr5g0417621	35.043	117	59	4	48	147	130	246	2.11e-12	64.3
MsaG036660	MtrunA17_Chr4g0042501	35.345	116	62	4	34	136	86	201	2.26e-12	64.3
MsaG036660	MtrunA17_Chr4g0070641	32.000	100	55	3	49	135	11	110	1.48e-11	60.1
MsaG036660	MtrunA17_Chr7g0233161	44.944	89	37	3	15	91	262	350	1.53e-11	61.6
MsaG036660	MtrunA17_Chr4g0053431	36.559	93	47	3	55	135	8	100	1.96e-11	60.8
MsaG036660	MtrunA17_Chr7g0247131	45.763	59	31	1	77	134	17	75	1.97e-11	60.8
MsaG036660	MtrunA17_Chr3g0133601	35.484	93	48	3	55	135	40	132	2.65e-11	60.1
MsaG036660	MtrunA17_Chr8g0346561	34.043	94	49	3	55	135	17	110	2.89e-11	60.8
MsaG036660	MtrunA17_Chr5g0441131	45.312	64	33	2	77	138	48	111	4.82e-11	58.9
MsaG036660	MtrunA17_Chr7g0270891	40.984	61	35	1	77	136	51	111	5.00e-11	60.5
MsaG036660	MtrunA17_Chr1g0186061	34.066	91	47	3	55	132	25	115	5.08e-11	59.7
MsaG036660	MtrunA17_Chr8g0349261	45.763	59	31	1	77	134	53	111	5.11e-11	60.1
MsaG036660	MtrunA17_Chr4g0070611	30.833	120	68	4	50	154	12	131	7.01e-11	59.7
MsaG036660	MtrunA17_Chr5g0437321	43.333	60	33	1	77	135	55	114	7.57e-11	59.7
MsaG036660	MtrunA17_Chr4g0055981	32.000	100	53	3	50	135	55	153	7.62e-11	58.9
MsaG036660	MtrunA17_Chr8g0343831	31.313	99	55	3	50	135	8	106	9.07e-11	58.9
MsaG036660	MtrunA17_Chr4g0048511	46.667	60	31	1	77	135	52	111	9.42e-11	59.7
MsaG036660	MtrunA17_Chr4g0044421	43.333	60	33	1	77	135	51	110	9.46e-11	58.2
MsaG036660	MtrunA17_Chr7g0274581	42.029	69	37	2	77	142	51	119	9.84e-11	58.5
MsaG036660	MtrunA17_Chr1g0193801	40.984	61	35	1	77	136	51	111	1.00e-10	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036660	AT4G18770.1	40.000	115	57	3	46	148	211	325	1.27e-20	88.2
MsaG036660	AT3G27785.1	40.541	111	54	2	46	144	183	293	1.57e-19	85.1
MsaG036660	AT5G40360.1	40.678	118	56	3	44	148	150	266	1.73e-18	82.0
MsaG036660	AT5G58850.1	38.532	109	55	3	49	145	102	210	1.60e-17	79.7
MsaG036660	AT2G25230.1	39.535	129	65	4	44	159	18	146	1.93e-17	77.4
MsaG036660	AT5G11050.1	39.640	111	55	3	47	145	100	210	2.20e-17	79.0
MsaG036660	AT5G40430.1	36.691	139	76	3	46	172	48	186	2.03e-16	75.1
MsaG036660	AT3G53200.2	43.056	72	39	2	62	132	1	71	1.00e-13	67.0
MsaG036660	AT5G11510.3	37.778	90	44	2	55	132	84	173	4.45e-13	67.0
MsaG036660	AT5G11510.1	37.778	90	44	2	55	132	84	173	4.45e-13	67.0
MsaG036660	AT5G11510.4	37.778	90	44	2	55	132	84	173	4.45e-13	67.0
MsaG036660	AT5G11510.2	37.778	90	44	2	55	132	84	173	4.72e-13	67.0
MsaG036660	AT5G11510.5	37.778	90	44	2	55	132	84	173	4.92e-13	67.0
MsaG036660	AT4G33450.1	44.595	74	36	2	77	149	55	124	8.62e-13	65.1
MsaG036660	AT1G69560.1	29.921	127	72	4	44	153	99	225	1.21e-12	65.1
MsaG036660	AT1G69560.2	29.921	127	72	4	44	153	115	241	1.26e-12	65.1
MsaG036660	AT3G28470.1	33.663	101	54	3	48	135	10	110	1.29e-12	65.1
MsaG036660	AT3G53200.1	47.368	57	29	1	77	132	48	104	1.95e-12	63.9
MsaG036660	AT5G02320.3	36.559	93	47	3	55	135	70	162	2.10e-12	65.1
MsaG036660	AT5G02320.1	36.559	93	47	3	55	135	130	222	2.15e-12	65.1
MsaG036660	AT5G02320.2	36.559	93	47	3	55	135	130	222	2.15e-12	65.1
MsaG036660	AT2G47190.1	32.110	109	61	3	37	132	7	115	2.39e-12	63.9
MsaG036660	AT1G57560.2	42.029	69	39	1	77	144	51	119	3.58e-12	63.5
MsaG036660	AT3G09370.2	38.710	93	45	3	55	135	138	230	3.96e-12	64.3
MsaG036660	AT3G09370.1	38.710	93	45	3	55	135	133	225	3.99e-12	63.9
MsaG036660	AT1G57560.1	42.029	69	39	1	77	144	51	119	4.46e-12	63.5
MsaG036660	AT3G09370.3	38.710	93	45	3	55	135	146	238	5.19e-12	63.9
MsaG036660	AT5G35550.1	36.585	82	51	1	77	157	53	134	3.29e-11	60.8
MsaG036660	AT5G35550.2	36.585	82	51	1	77	157	56	137	3.47e-11	60.5
MsaG036660	AT4G01680.2	35.632	87	50	2	62	147	48	129	3.54e-11	61.2
MsaG036660	AT1G09540.1	43.333	60	33	1	77	135	51	110	3.83e-11	61.2
MsaG036660	AT4G28110.1	46.667	60	31	1	77	135	51	110	4.18e-11	60.5
MsaG036660	AT4G32730.1	34.409	93	49	3	55	135	90	182	4.71e-11	61.2
MsaG036660	AT1G26780.1	44.262	61	33	1	77	136	134	194	5.12e-11	60.5
MsaG036660	AT3G55730.1	34.409	93	49	3	55	135	59	151	5.28e-11	60.8
MsaG036660	AT4G32730.5	34.409	93	49	3	55	135	90	182	5.43e-11	60.8
MsaG036660	AT4G32730.4	34.409	93	49	3	55	135	90	182	5.43e-11	60.8
MsaG036660	AT4G32730.3	34.409	93	49	3	55	135	90	182	5.43e-11	60.8
MsaG036660	AT4G32730.2	34.409	93	49	3	55	135	90	182	5.43e-11	60.8
MsaG036660	AT1G17950.1	40.260	77	42	2	77	149	41	117	7.18e-11	59.7
MsaG036660	AT1G26780.2	44.262	61	33	1	77	136	134	194	8.30e-11	60.1
MsaG036660	AT4G12350.1	42.188	64	36	1	73	135	47	110	9.65e-11	59.7
MsaG036660	AT5G56110.1	34.343	99	52	3	49	134	11	109	9.88e-11	59.7

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCATTCTCGACTTGCTTAA+TGG	0.229142	7:+40840514	None:intergenic
ACTACTCCAGAAGATGAATT+TGG	0.261057	7:-40840428	MsaT036660.1:CDS
GATCAAGCCCACAACATATT+TGG	0.264284	7:-40840608	MsaT036660.1:CDS
AAAAGAAACACCTTAATATC+TGG	0.291683	7:+40841122	None:intergenic
CCATTGATCAGCATTTATAT+TGG	0.314785	7:+40841383	None:intergenic
GAATAGTATTCTGCTGCTTA+TGG	0.333313	7:+40841436	None:intergenic
CAATCTTAAACCAGATATTA+AGG	0.334007	7:-40841132	MsaT036660.1:intron
TATCCACCAAATTCATCTTC+TGG	0.354153	7:+40840422	None:intergenic
TAAGCAGCAGAATACTATTC+AGG	0.381837	7:-40841433	MsaT036660.1:CDS
TAATCATCGTTGAATGTCAT+TGG	0.440215	7:+40840395	None:intergenic
ACAACATATTTGGAGACAAC+TGG	0.446422	7:-40840598	MsaT036660.1:CDS
GTTGTCTCCAAATATGTTGT+GGG	0.463375	7:+40840601	None:intergenic
TGCTTATGGTAAATGAGAAC+GGG	0.465009	7:+40841450	None:intergenic
ATATTTGTATCCAATTTCAC+TGG	0.483235	7:+40841491	None:intergenic
AATGGACTACAAAAGAGAAT+AGG	0.491834	7:-40841365	MsaT036660.1:intron
AGTTGTCTCCAAATATGTTG+TGG	0.504440	7:+40840600	None:intergenic
GAAATTTCAAGAAGATTGCC+AGG	0.513813	7:-40840572	MsaT036660.1:CDS
CCAATATAAATGCTGATCAA+TGG	0.515462	7:-40841383	MsaT036660.1:CDS
TGAGAACGGGTTCTTGATCA+TGG	0.521600	7:+40841463	None:intergenic
CTGCTTATGGTAAATGAGAA+CGG	0.536086	7:+40841449	None:intergenic
TGGATCTCTTTCTAAATCGA+TGG	0.536456	7:-40841184	MsaT036660.1:CDS
TAAAACAATGCATGGAGAGA+TGG	0.560064	7:-40841157	MsaT036660.1:CDS
ATGGACCTTAAAACAATGCA+TGG	0.570560	7:-40841165	MsaT036660.1:CDS
ACTCCAGAAGATGAATTTGG+TGG	0.588319	7:-40840425	MsaT036660.1:CDS
TAAGGATCATCATATGGATG+AGG	0.593905	7:-40841538	None:intergenic
GAATGAGCCATTGAGTGAGG+AGG	0.611909	7:-40840645	MsaT036660.1:CDS
ACATAACTATCGTTACGTCC+TGG	0.612302	7:+40840554	None:intergenic
TGGTTGCAAAACTAGAGTGA+TGG	0.623138	7:+40841511	None:intergenic
TCGATTTAGAAAGAGATCCA+CGG	0.651610	7:+40841187	None:intergenic
GTAGAATGAGCCATTGAGTG+AGG	0.657428	7:-40840648	MsaT036660.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	40840394	40841547	40840394	ID=MsaG036660
Chr7	mRNA	40840394	40841547	40840394	ID=MsaT036660.1;Parent=MsaG036660
Chr7	exon	40840394	40840666	40840394	ID=MsaT036660.1.exon3;Parent=MsaT036660.1
Chr7	CDS	40840394	40840666	40840394	ID=cds.MsaT036660.1;Parent=MsaT036660.1
Chr7	exon	40841133	40841223	40841133	ID=MsaT036660.1.exon2;Parent=MsaT036660.1
Chr7	CDS	40841133	40841223	40841133	ID=cds.MsaT036660.1;Parent=MsaT036660.1
Chr7	exon	40841366	40841547	40841366	ID=MsaT036660.1.exon1;Parent=MsaT036660.1
Chr7	CDS	40841366	40841547	40841366	ID=cds.MsaT036660.1;Parent=MsaT036660.1

Gene Sequence

>MsaT036660.1

ATGGATGAGGTTAACCATCACTCTAGTTTTGCAACCAGTGAAATTGGATACAAATATCAAGACCATGATCAAGAACCCGTTCTCATTTACCATAAGCAGCAGAATACTATTCAGGAGAATAATGAAATTCATCACAAATATTCCAATATAAATGCTGATCAATGGACTACAAAAGAGAATAGCATTTTTGTCGAATCCGTGGATCTCTTTCTAAATCGATGGACCTTAAAACAATGCATGGAGAGATGGTACAATCTTAAACCAGATATTAAGAATGAGCCATTGAGTGAGGAGGAGCAAAACATACTAGATCAAGCCCACAACATATTTGGAGACAACTGGACTGAAATTTCAAGAAGATTGCCAGGACGTAACGATAGTTATGTTAAGAATCATTTGAACGCCATTAAGCAAGTCGAGAATGCCAAGAAAAAATCCAGGAACATGGTGAAAATTAAGAACCAACCTAATTACATTTTTGAAGGTTTGACTACTCCAGAAGATGAATTTGGTGGATATGTGCCAATGACATTCAACGATGATTAG

Protein sequence

>MsaT036660.1

MDEVNHHSSFATSEIGYKYQDHDQEPVLIYHKQQNTIQENNEIHHKYSNINADQWTTKENSIFVESVDLFLNRWTLKQCMERWYNLKPDIKNEPLSEEEQNILDQAHNIFGDNWTEISRRLPGRNDSYVKNHLNAIKQVENAKKKSRNMVKIKNQPNYIFEGLTTPEDEFGGYVPMTFNDD*