AlfalfaGEDB | MsaG036699

M. sativa ssp. caerulea / MsaG036699

KEGG: K12606 K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036699	XP_039683162.1	90.461	304	27	1	1	302	1	304	0.0	539

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036699	sp\|Q6P819\|CNOT9_XENTR	54.406	261	119	0	33	293	28	288	4.41e-94	283

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036699	tr\|A0A396GV60\|A0A396GV60_MEDTR	89.869	306	27	2	1	302	1	306	0.0	534

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036699	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000081	MsaG036699	0.825135	9.812002e-54	2.477355e-51
MsaG000234	MsaG036699	0.876371	3.065775e-68	4.687056e-65
MsaG000364	MsaG036699	0.838536	4.991904e-57	1.861577e-54
MsaG000379	MsaG036699	0.852862	6.706938e-61	4.015667e-58
MsaG000520	MsaG036699	0.859906	5.870545e-63	4.547759e-60
MsaG000583	MsaG036699	0.811191	1.357532e-50	2.386686e-48
MsaG000999	MsaG036699	0.835531	2.899114e-56	9.867002e-54
MsaG001246	MsaG036699	0.810292	2.119653e-50	3.645610e-48
MsaG001281	MsaG036699	0.821646	6.356664e-53	1.460339e-50
MsaG001283	MsaG036699	0.832328	1.820627e-55	5.635443e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036699	MtrunA17_Chr7g0224601	89.869	306	27	2	1	302	1	306	0.0	534
MsaG036699	MtrunA17_Chr8g0392781	56.418	335	111	2	1	300	11	345	1.27e-121	352
MsaG036699	MtrunA17_Chr3g0099561	62.409	274	103	0	28	301	26	299	2.42e-119	345
MsaG036699	MtrunA17_Chr1g0177151	66.239	234	79	0	14	247	20	253	3.65e-111	322
MsaG036699	MtrunA17_Chr5g0444621	67.157	204	67	0	68	271	60	263	5.68e-89	266
MsaG036699	MtrunA17_Chr6g0477171	67.005	197	65	0	49	245	45	241	1.22e-86	260
MsaG036699	MtrunA17_Chr3g0083811	57.759	116	49	0	176	291	1	116	5.92e-38	130
MsaG036699	MtrunA17_Chr3g0083821	67.368	95	31	0	70	164	36	130	6.48e-38	130
MsaG036699	MtrunA17_Chr5g0444631	86.792	53	7	0	102	154	4	56	1.91e-26	99.0
MsaG036699	MtrunA17_Chr6g0477181	71.429	49	14	0	1	49	11	59	2.12e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036699	AT3G20800.1	57.235	311	122	1	1	300	1	311	1.55e-115	336
MsaG036699	AT5G12980.1	54.074	270	124	0	22	291	29	298	1.42e-100	298
MsaG036699	AT2G32550.2	33.955	268	167	4	31	288	53	320	7.15e-39	139
MsaG036699	AT2G32550.3	34.921	252	138	4	54	288	39	281	8.03e-39	138
MsaG036699	AT2G32550.1	37.374	198	121	2	94	288	29	226	1.37e-36	131

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Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGTCAGATGATGA+TGG	0.481246	7:-41631257	MsaT036699.1:CDS
AACATGGTATTGGAAAGTGT+TGG	0.637520	7:-41631179	MsaT036699.1:CDS
AACCAGGTTCCCTTAGTACC+AGG	0.560044	7:-41629048	MsaT036699.1:CDS
AACTCAACAATCCTGATCTC+AGG	0.384176	7:-41635240	MsaT036699.1:CDS
AACTCGAGTGTGCAATGTTC+TGG	0.374857	7:-41632883	MsaT036699.1:CDS
AAGATGAAACAACTTGGAGC+TGG	0.506447	7:-41629101	MsaT036699.1:CDS
AAGCCTTAAATGCTCAAATT+GGG	0.502413	7:+41632218	None:intergenic
AAGGAAATCTATGCCTTCTT+TGG	0.298112	7:+41631517	None:intergenic
AATAGAGAAACTAACAGTTT+TGG	0.311116	7:+41631436	None:intergenic
ACTCAACAATCCTGATCTCA+GGG	0.561365	7:-41635239	MsaT036699.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	41629032	41635359	41629032	ID=MsaG036699
Chr7	mRNA	41629032	41635359	41629032	ID=MsaT036699.1;Parent=MsaG036699
Chr7	exon	41629032	41629124	41629032	ID=MsaT036699.1.exon9;Parent=MsaT036699.1
Chr7	CDS	41629032	41629124	41629032	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41630947	41631016	41630947	ID=MsaT036699.1.exon8;Parent=MsaT036699.1
Chr7	CDS	41630947	41631016	41630947	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41631110	41631300	41631110	ID=MsaT036699.1.exon7;Parent=MsaT036699.1
Chr7	CDS	41631110	41631300	41631110	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41631451	41631546	41631451	ID=MsaT036699.1.exon6;Parent=MsaT036699.1
Chr7	CDS	41631451	41631546	41631451	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41632185	41632291	41632185	ID=MsaT036699.1.exon5;Parent=MsaT036699.1
Chr7	CDS	41632185	41632291	41632185	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41632639	41632681	41632639	ID=MsaT036699.1.exon4;Parent=MsaT036699.1
Chr7	CDS	41632639	41632681	41632639	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41632872	41632961	41632872	ID=MsaT036699.1.exon3;Parent=MsaT036699.1
Chr7	CDS	41632872	41632961	41632872	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41633650	41633721	41633650	ID=MsaT036699.1.exon2;Parent=MsaT036699.1
Chr7	CDS	41633650	41633721	41633650	ID=cds.MsaT036699.1;Parent=MsaT036699.1
Chr7	exon	41635213	41635359	41635213	ID=MsaT036699.1.exon1;Parent=MsaT036699.1
Chr7	CDS	41635213	41635359	41635213	ID=cds.MsaT036699.1;Parent=MsaT036699.1

Gene Sequence

>MsaT036699.1

ATGAATAATGTTGCGTCGTTTGTAAGTCCTCGAACTGCTTCATCCCAATCTAGCACCACAGCCCAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCTCCAAGAGGATTGGGTTATTTCCGGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTGTACAGGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTCTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGGCATAGATTTCCTTCTGAGAAGTGAGATAATTCCACTATGCCTACGCAACATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTAAATTTCATCAATTGCCTTCGCGAAGATGAAACAACTTGGAGCTGGGTAATGAAGTTGCATGAAAATATTGGGGTGAACCAGGTTCCCTTAGTACCAGGTGGAGGGAATCAATGA

Protein sequence

>MsaT036699.1

MNNVASFVSPRTASSQSSTTAQSMASMERLVIELNNPDLRENALRVLSKRIGLFPELAPLLWNSYGTIEIFVQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKVNTKEGIDFLLRSEIIPLCLRNMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLREDETTWSWVMKLHENIGVNQVPLVPGGGNQ*