AlfalfaGEDB | MsaG036703

M. sativa ssp. caerulea / MsaG036703

KEGG: K12606 K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036703	XP_039683162.1	89.051	274	30	0	1	274	1	274	8.44e-166	478

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036703	sp\|Q6P819\|CNOT9_XENTR	55.691	246	107	1	33	278	28	271	1.67e-85	266

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036703	tr\|A0A396GV60\|A0A396GV60_MEDTR	88.406	276	30	1	1	274	1	276	1.78e-164	474

TFs/TRs:

Gene ID	Type	Classification
MsaG036703	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036703	MtrunA17_Chr7g0224601	88.406	276	30	1	1	274	1	276	3.43e-168	474
MsaG036703	MtrunA17_Chr1g0177151	64.854	239	82	1	11	249	17	253	3.68e-106	315
MsaG036703	MtrunA17_Chr3g0099561	63.968	247	87	1	28	274	26	270	1.40e-103	310
MsaG036703	MtrunA17_Chr8g0392781	55.987	309	99	3	1	274	11	317	1.77e-103	311
MsaG036703	MtrunA17_Chr5g0444621	66.667	210	70	0	70	279	60	269	1.06e-89	273
MsaG036703	MtrunA17_Chr6g0477171	66.667	198	66	0	50	247	44	241	1.34e-84	259
MsaG036703	MtrunA17_Chr3g0083821	67.021	94	31	0	73	166	37	130	3.04e-36	129
MsaG036703	MtrunA17_Chr3g0083811	58.763	97	40	0	178	274	1	97	4.42e-28	107
MsaG036703	MtrunA17_Chr5g0444631	83.019	53	9	0	104	156	4	56	3.04e-24	95.1
MsaG036703	MtrunA17_Chr2g0323051	93.617	47	3	0	288	334	213	259	1.27e-21	97.4
MsaG036703	MtrunA17_Chr4g0023601	72.000	50	14	0	285	334	137	186	4.56e-18	86.3
MsaG036703	MtrunA17_Chr6g0477181	71.429	49	14	0	1	49	11	59	1.15e-14	69.7
MsaG036703	MtrunA17_Chr8g0363081	70.000	40	12	0	358	397	56	95	4.39e-14	67.8
MsaG036703	MtrunA17_Chr1g0167871	41.772	79	46	0	335	413	541	619	1.14e-12	70.1
MsaG036703	MtrunA17_Chr5g0393521	34.409	93	61	0	335	427	94	186	4.78e-12	66.6
MsaG036703	MtrunA17_Chr5g0417421	34.409	93	61	0	335	427	162	254	1.64e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036703	AT3G20800.1	58.246	285	106	2	1	274	1	283	8.58e-101	303
MsaG036703	AT5G12980.1	56.746	252	107	1	22	273	29	278	6.20e-93	283
MsaG036703	AT2G32550.3	37.611	226	115	4	56	264	39	255	2.71e-37	137
MsaG036703	AT2G32550.2	37.611	226	115	4	56	264	78	294	7.81e-37	137
MsaG036703	AT2G32550.1	40.698	172	99	2	96	264	29	200	2.80e-34	128
MsaG036703	AT4G15210.2	58.182	55	23	0	280	334	134	188	4.16e-15	77.4
MsaG036703	AT4G15210.3	58.182	55	23	0	280	334	81	135	6.33e-15	77.0
MsaG036703	AT4G15210.4	58.182	55	23	0	280	334	81	135	6.33e-15	77.0
MsaG036703	AT4G15210.1	58.182	55	23	0	280	334	134	188	6.37e-15	77.0
MsaG036703	AT2G32290.1	62.000	50	19	0	285	334	202	251	1.17e-13	73.2

Find 78 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATAATAAACCTTTCTTTAA+TGG	0.118021	7:-41831705	MsaT036703.1:CDS
TAGCCCAATTTGAACATTTA+AGG	0.121073	7:-41834852	MsaT036703.1:CDS
ACAATGCTGAATTTGTATTT+TGG	0.151011	7:-41827875	MsaT036703.1:CDS
CAGAACTTGCACCTTTATTA+TGG	0.191101	7:-41836320	MsaT036703.1:CDS
CAAGCCTTAAATGTTCAAAT+TGG	0.198561	7:+41834848	None:intergenic
AGGGAATGTCTTCAGATTAT+TGG	0.267363	7:-41827849	MsaT036703.1:CDS
CATAATAAAGGTGCAAGTTC+TGG	0.267649	7:+41836321	None:intergenic
CCTTTATTATGGAATTCTTA+TGG	0.279542	7:-41836309	MsaT036703.1:CDS
TATCATCAATCATCAGTTCT+AGG	0.300027	7:-41827612	MsaT036703.1:CDS
GCATTACTGCTGATGCTCTT+AGG	0.304459	7:-41827827	MsaT036703.1:CDS
AATAGAGAAACTAACAGTTT+TGG	0.311116	7:+41834060	None:intergenic
TAATGGAAGAACTTCCATTC+AGG	0.344450	7:-41831688	MsaT036703.1:intron
GGGCTTGCAATGCATTAAAA+AGG	0.353362	7:-41833618	MsaT036703.1:CDS
CAATGTTCTGGAACTACTTC+AGG	0.355418	7:-41835503	MsaT036703.1:intron
GGTTTCTCGCGTGATCCTGC+TGG	0.362273	7:-41827591	MsaT036703.1:CDS
TTTGTGCTGTGGTGCTAGAT+TGG	0.371012	7:+41837943	None:intergenic
CCATAAGAATTCCATAATAA+AGG	0.371929	7:+41836309	None:intergenic
AACTCGAGTGTGCAATGTTC+TGG	0.374857	7:-41835515	MsaT036703.1:CDS
AACTCAACAATCCTGATCTC+AGG	0.384176	7:-41837890	MsaT036703.1:CDS
TTGTGCTGTGGTGCTAGATT+GGG	0.395336	7:+41837944	None:intergenic
CTTGCTAGTCTTGGAGTCAT+TGG	0.399485	7:-41834829	MsaT036703.1:CDS
CATTTAAGGCTTGCTAGTCT+TGG	0.411996	7:-41834838	MsaT036703.1:CDS
AAGCCTTAAATGTTCAAATT+GGG	0.413189	7:+41834849	None:intergenic
ACACATTTGGACAAATTGCT+TGG	0.414892	7:-41827672	MsaT036703.1:CDS
TCTGATATATCCAACACATT+TGG	0.418453	7:-41827685	MsaT036703.1:CDS
CACTGGTAAGGCAGTGATGC+TGG	0.420314	7:-41831727	MsaT036703.1:CDS
GAAGTAGGACTTGGCCCTGC+TGG	0.426559	7:-41831213	MsaT036703.1:CDS
GATTGGGATGAAGCAGTTAG+AGG	0.438610	7:+41837960	None:intergenic
TCGCTTGTCGTTCGAAGGAA+TGG	0.440010	7:+41834877	None:intergenic
GAAGTTCTTCCATTAAAGAA+AGG	0.443893	7:+41831696	None:intergenic
TTCAATAACAAGGCGTTCCA+TGG	0.458343	7:+41837911	None:intergenic
TGCCTACGCAGCATGGAAAT+CGG	0.460606	7:-41834094	MsaT036703.1:CDS
AAGGAAATCTATGCTTTCCT+TGG	0.460812	7:+41834141	None:intergenic
AGCAATTTGTCCAAATGTGT+TGG	0.481139	7:+41827675	None:intergenic
AAAATTATGTCAGATGATGA+TGG	0.481246	7:-41833881	MsaT036703.1:CDS
TGCTCTTCGTGTTCTCTCCA+AGG	0.482455	7:-41837862	MsaT036703.1:intron
GTTTCTCGCGTGATCCTGCT+GGG	0.485040	7:-41827590	MsaT036703.1:CDS
AGATTCAACAGCGGAATAGT+AGG	0.487502	7:+41835553	None:intergenic
ATGTTTGCAGGTCACTGGTA+AGG	0.491200	7:-41831739	MsaT036703.1:intron
GATGGTTTGATTTATGTTTG+TGG	0.502440	7:-41833863	MsaT036703.1:CDS
AGCACAAAGCATGGCATCCA+TGG	0.505480	7:-41837928	MsaT036703.1:CDS
GGATATCTAAGTTACCCAGC+AGG	0.522470	7:+41831198	None:intergenic
TTATTATTAGCTAACCTGAA+TGG	0.528931	7:+41831674	None:intergenic
TGTTGATGTTTGCAGGTCAC+TGG	0.529088	7:-41831744	MsaT036703.1:intron
AAGTAGGACTTGGCCCTGCT+GGG	0.529264	7:-41831212	MsaT036703.1:intron
TCTTGGAGTCATTGGTGCAT+TGG	0.530074	7:-41834821	MsaT036703.1:CDS
GAATTATCTCACTTCTAAGA+AGG	0.538844	7:+41834122	None:intergenic
ATCAAGGCTCACCTTCATCC+TGG	0.543372	7:-41827558	MsaT036703.1:CDS
TCCACTATGCCTACGCAGCA+TGG	0.546502	7:-41834101	MsaT036703.1:CDS
GGATGCCATGCTTTGTGCTG+TGG	0.548520	7:+41837932	None:intergenic
CTAACTCGCTTGTCGTTCGA+AGG	0.550213	7:+41834872	None:intergenic
GTGGTTGTGGAAGTTGTCTA+TGG	0.552553	7:-41827903	MsaT036703.1:CDS
ATTATGGTCCACCAGGATGA+AGG	0.555644	7:+41827547	None:intergenic
CTACTTATAGACATTGAAGT+AGG	0.559028	7:-41831228	MsaT036703.1:CDS
TGCTGGGATTGAGAAAATCA+AGG	0.559403	7:-41827574	MsaT036703.1:CDS
ACTCAACAATCCTGATCTCA+GGG	0.561365	7:-41837889	MsaT036703.1:CDS
TCCGCTGTTGAATCTTACTC+AGG	0.564161	7:-41835545	MsaT036703.1:CDS
TCCATGCTGCGTAGGCATAG+TGG	0.580220	7:+41834100	None:intergenic
ATAGACATTGAAGTAGGACT+TGG	0.586139	7:-41831222	MsaT036703.1:CDS
AAACAACGATACCTCTTGCA+TGG	0.595813	7:+41827800	None:intergenic
TGCCGATTTCCATGCTGCGT+AGG	0.604124	7:+41834092	None:intergenic
TAGCACCACAGCACAAAGCA+TGG	0.612717	7:-41837937	MsaT036703.1:CDS
AGTCATTGGTGCATTGGTGA+AGG	0.613240	7:-41834815	MsaT036703.1:intron
GATATCTAAGTTACCCAGCA+GGG	0.617193	7:+41831199	None:intergenic
CACAAGAAGTACTTACGCGA+AGG	0.618083	7:+41833554	None:intergenic
GATTTGGATTATGGTCCACC+AGG	0.621893	7:+41827540	None:intergenic
AAAATACAAATTCAGCATTG+TGG	0.627275	7:+41827877	None:intergenic
AGTTTGATCAATTGATGTGA+AGG	0.628164	7:+41833773	None:intergenic
AACATGGTATTGGAAAGTGT+TGG	0.637520	7:-41833803	MsaT036703.1:CDS
GTTGTGGAAGTTGTCTATGG+TGG	0.638748	7:-41827900	MsaT036703.1:CDS
AAGGCTCACCTTCATCCTGG+TGG	0.639182	7:-41827555	MsaT036703.1:CDS
AAATGTGTTGGATATATCAG+AGG	0.642160	7:+41827687	None:intergenic
GATTGTTGAGTTCAATAACA+AGG	0.670356	7:+41837901	None:intergenic
TCTTAGGAAGACCATGCAAG+AGG	0.688256	7:-41827811	MsaT036703.1:intron
TGAGACAAAAGAGAATAACA+TGG	0.703854	7:+41833743	None:intergenic
ATAGTCACAGGCTAACACCA+AGG	0.732486	7:-41834158	MsaT036703.1:intron
GCCTGAGTAAGATTCAACAG+CGG	0.773865	7:+41835544	None:intergenic
ACTGATGATTGATGATAACG+CGG	0.786782	7:+41827618	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	41827548	41838009	41827548	ID=MsaG036703
Chr7	mRNA	41827548	41838009	41827548	ID=MsaT036703.1;Parent=MsaG036703
Chr7	exon	41827548	41827724	41827548	ID=MsaT036703.1.exon12;Parent=MsaT036703.1
Chr7	CDS	41827548	41827724	41827548	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41827812	41827932	41827812	ID=MsaT036703.1.exon11;Parent=MsaT036703.1
Chr7	CDS	41827812	41827932	41827812	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41831213	41831310	41831213	ID=MsaT036703.1.exon10;Parent=MsaT036703.1
Chr7	CDS	41831213	41831310	41831213	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41831689	41831751	41831689	ID=MsaT036703.1.exon9;Parent=MsaT036703.1
Chr7	CDS	41831689	41831751	41831689	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41833552	41833639	41833552	ID=MsaT036703.1.exon8;Parent=MsaT036703.1
Chr7	CDS	41833552	41833639	41833552	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41833734	41833924	41833734	ID=MsaT036703.1.exon7;Parent=MsaT036703.1
Chr7	CDS	41833734	41833924	41833734	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41834075	41834170	41834075	ID=MsaT036703.1.exon6;Parent=MsaT036703.1
Chr7	CDS	41834075	41834170	41834075	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41834816	41834922	41834816	ID=MsaT036703.1.exon5;Parent=MsaT036703.1
Chr7	CDS	41834816	41834922	41834816	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41835271	41835313	41835271	ID=MsaT036703.1.exon4;Parent=MsaT036703.1
Chr7	CDS	41835271	41835313	41835271	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41835504	41835593	41835504	ID=MsaT036703.1.exon3;Parent=MsaT036703.1
Chr7	CDS	41835504	41835593	41835504	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41836287	41836364	41836287	ID=MsaT036703.1.exon2;Parent=MsaT036703.1
Chr7	CDS	41836287	41836364	41836287	ID=cds.MsaT036703.1;Parent=MsaT036703.1
Chr7	exon	41837863	41838009	41837863	ID=MsaT036703.1.exon1;Parent=MsaT036703.1
Chr7	CDS	41837863	41838009	41837863	ID=cds.MsaT036703.1;Parent=MsaT036703.1

Gene Sequence

>MsaT036703.1

ATGAATAACGTTGCGTCGTTTGTAAGTCCTCTAACTGCTTCATCCCAATCTAGCACCACAGCACAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCTCCAAGTTTCGGAGGATTGGGTTATTTCCAGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTTTACAGGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTCTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCGAACGACAAGCGAGTTAGCCCAATTTGAACATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGCTAACACCAAGGAAAGCATAGATTTCCTTCTTAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTCAATTTCATCAATTGCCTTCGCGTAAGTACTTCTTGTGATGTCACTGGTAAGGCAGTGATGCTGGATAATAAACCTTTCTTTAATGGAAGAACTTCCATTCAGATTTATAGCGACTACATGAAGAGTTTTAGAGAGAACATGGCTGATTTCTTAGAATCTGAGCTACTTATAGACATTGAAGTAGGACTTGGCCCTGCTGGATACAAAGTGGTTGTGGAAGTTGTCTATGGTGGCCACAATGCTGAATTTGTATTTTGGGATAGGGAATGTCTTCAGATTATTGGCATTACTGCTGATGCTCTTAGGAAGACCATGCAAGAGGTCGGTGAAGATGATCCTCTGATATATCCAACACATTTGGACAAATTGCTTGGACTTGAGTTTGCGTTTCGTGCAAAGTATCAGCCGCGTTATCATCAATCATCAGTTCTAGGTTTCTCGCGTGATCCTGCTGGGATTGAGAAAATCAAGGCTCACCTTCATCCTGGTGGACCATAA

Protein sequence

>MsaT036703.1

MNNVASFVSPLTASSQSSTTAQSMASMERLVIELNNPDLRENALRVLSKFRRIGLFPELAPLLWNSYGTIEIFLQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLRTTSELAQFEHLRLASLGVIGALVKANTKESIDFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLRVSTSCDVTGKAVMLDNKPFFNGRTSIQIYSDYMKSFRENMADFLESELLIDIEVGLGPAGYKVVVEVVYGGHNAEFVFWDRECLQIIGITADALRKTMQEVGEDDPLIYPTHLDKLLGLEFAFRAKYQPRYHQSSVLGFSRDPAGIEKIKAHLHPGGP*