AlfalfaGEDB | MsaG036746

M. sativa ssp. caerulea / MsaG036746

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036746	XP_013442483.1	97.050	339	7	1	1	336	23	361	0.0	671

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036746	sp\|Q9M202\|ZAT9_ARATH	43.636	330	112	11	1	322	23	286	4.39e-58	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036746	tr\|A0A072THU2\|A0A072THU2_MEDTR	97.050	339	7	1	1	336	23	361	0.0	671

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036746	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036746	MtrunA17_Chr7g0231181	97.050	339	7	1	1	336	23	361	0.0	671
MsaG036746	MtrunA17_Chr4g0056091	43.299	291	123	10	47	330	60	315	7.14e-57	187
MsaG036746	MtrunA17_Chr4g0012691	44.784	393	118	16	1	334	24	376	6.98e-54	181
MsaG036746	MtrunA17_Chr4g0061301	39.873	158	52	4	205	321	340	495	2.36e-25	106
MsaG036746	MtrunA17_Chr5g0399261	36.453	203	97	6	38	237	71	244	1.19e-23	98.2
MsaG036746	MtrunA17_Chr1g0182161	42.735	117	52	4	215	317	39	154	1.69e-21	89.7
MsaG036746	MtrunA17_Chr7g0263131	40.816	147	69	9	188	319	6	149	2.27e-21	89.4
MsaG036746	MtrunA17_Chr1g0207451	37.956	137	64	6	200	316	64	199	9.92e-20	87.0
MsaG036746	MtrunA17_Chr4g0012791	31.897	232	86	7	144	313	159	380	1.79e-19	89.0
MsaG036746	MtrunA17_Chr2g0327901	34.694	147	70	5	178	319	4	129	1.47e-18	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036746	AT3G60580.1	43.636	330	112	11	1	322	23	286	4.46e-59	192
MsaG036746	AT2G45120.1	43.373	332	134	11	1	322	23	310	1.44e-50	171
MsaG036746	AT1G02030.1	40.426	282	107	10	57	320	25	263	2.17e-34	127
MsaG036746	AT3G53600.1	39.535	129	65	4	215	333	49	174	3.68e-22	92.0
MsaG036746	AT3G19580.1	31.019	216	79	7	140	319	64	245	1.97e-21	92.4
MsaG036746	AT3G19580.2	31.019	216	79	7	140	319	64	245	1.97e-21	92.4
MsaG036746	AT2G37430.1	43.443	122	43	6	214	317	46	159	4.07e-19	84.0
MsaG036746	AT2G28200.1	34.839	155	44	6	215	317	115	264	8.97e-18	82.8
MsaG036746	AT5G61470.1	46.667	75	40	0	211	285	224	298	1.09e-17	82.8
MsaG036746	AT5G43170.1	35.333	150	51	3	142	291	45	148	2.63e-17	79.3

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Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACACATGTGATTCA+TGG	0.392470	7:+43352226	MsaT036746.1:CDS
AAAAGGGTGTGGAAAATTCG+CGG	0.559838	7:+43351680	MsaT036746.1:CDS
AAAGAAAGTTCATGAATGTC+CGG	0.517315	7:+43352159	MsaT036746.1:CDS
AAAGGGTGTGGAAAATTCGC+GGG	0.538446	7:+43351681	MsaT036746.1:CDS
AAATCTTATCAAGCATTGGG+TGG	0.639931	7:+43352061	MsaT036746.1:CDS
AAATGAACAATATGAAGACG+TGG	0.705726	7:+43351874	MsaT036746.1:CDS
AACTCGGAAAAGATCCAAAA+GGG	0.553686	7:+43351664	MsaT036746.1:CDS
AATAATAATAAAGTACGTAA+AGG	0.519533	7:+43352004	MsaT036746.1:CDS
AATTCGGGTCAAGCACTTGG+TGG	0.534790	7:+43352199	MsaT036746.1:CDS
AATTGAAATCGAAAGATCTT+TGG	0.317289	7:+43351940	MsaT036746.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	43351389	43352399	43351389	ID=MsaG036746
Chr7	mRNA	43351389	43352399	43351389	ID=MsaT036746.1;Parent=MsaG036746
Chr7	exon	43351389	43352399	43351389	ID=MsaT036746.1.exon1;Parent=MsaT036746.1
Chr7	CDS	43351389	43352399	43351389	ID=cds.MsaT036746.1;Parent=MsaT036746.1

Gene Sequence

>MsaT036746.1

ATGAGATCTCATATGATGAACCTTCTTGTTACAAAGCAAGAAGAAGAATCATCGCGAACGGTTCAACTTAGTTTTGAAGCTGAATCAGCACCGTCTTCATCATCGTCATCAGAAGATGATGACGTTGATGAAAAGGGTCTTAATTATGGTCTTAGAGAGAATCCAAAGAGAAGCATTCGTCTCGTAGATCAAGAGTTTTCTTTTCCACAAGTGGATACAAGTTCCGTGATTCTTCAAGATATAGAAAGCGAAACTGAATCATCGAAGAATAATCCAACTCGGAAAAGATCCAAAAGGGTGTGGAAAATTCGCGGGTTTGAACAAAAGTATTACAATGAATCTGCTACGAAGAAAATGAAATTTTTTAACAAGAATGATTCTTCGGTTGTTGAACATGAACCTGTTAGTTCGGTTTCTGATGCAACAACCGAAGAAGATGTTGCATTTTGTCTAATGCAGTTGTCGAGAGACAAATGGAATAGACAAAATGAACAATATGAAGACGTGGAAGAAGAAGATGATGACGACGAAGCTGAAGAGGAAGAAGATGAAATTGAAATCGAAAGATCTTTGGAAGATAGTGATGAATCTCAAGAGCTAGTAAAAGTATGCAAGAATAATAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTGTTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAACCGAACATAACGGTGGAAGAATCGTCGCCAGAATTCGAAGTTGTTGAAAAGAAAGTTCATGAATGTCCGGTATGTTTTCGAGTATTCAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTGATTCATGGATCATCATCAACAACAGTTCCAATTTTCAGCTCAAAAAGAGTTGCAAAAAGTGTTATAGATCTTAACCTTCCTGCTCCAATTGAAGATGATGAAGTTAGTCAAATTGAAAATTCTGCTGTTTCTGATGCAGAATTTGTCAAAACTCGTTAA

Protein sequence

>MsaT036746.1

MRSHMMNLLVTKQEEESSRTVQLSFEAESAPSSSSSSEDDDVDEKGLNYGLRENPKRSIRLVDQEFSFPQVDTSSVILQDIESETESSKNNPTRKRSKRVWKIRGFEQKYYNESATKKMKFFNKNDSSVVEHEPVSSVSDATTEEDVAFCLMQLSRDKWNRQNEQYEDVEEEDDDDEAEEEEDEIEIERSLEDSDESQELVKVCKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKPNITVEESSPEFEVVEKKVHECPVCFRVFNSGQALGGHKRTHVIHGSSSTTVPIFSSKRVAKSVIDLNLPAPIEDDEVSQIENSAVSDAEFVKTR*