AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036765 MtrunA17_Chr7g0230771 95.929 737 14 4 1 729 4 732 0.0 1435
MsaG036765 MtrunA17_Chr7g0230731 95.658 737 13 5 1 729 4 729 0.0 1431
MsaG036765 MtrunA17_Chr4g0012071 53.974 541 186 12 204 729 60 552 1.87e-179 523
MsaG036765 MtrunA17_Chr8g0373561 36.216 370 219 11 370 729 180 542 2.16e-60 213
MsaG036765 MtrunA17_Chr2g0306641 32.368 380 223 9 369 728 122 487 2.43e-43 164
MsaG036765 MtrunA17_Chr7g0224271 27.169 438 267 11 317 729 264 674 1.07e-36 147
MsaG036765 MtrunA17_Chr3g0110971 28.684 380 243 7 369 728 216 587 1.22e-36 145
MsaG036765 MtrunA17_Chr8g0376381 28.267 375 236 9 369 728 166 522 1.07e-35 142
MsaG036765 MtrunA17_Chr4g0038761 30.189 371 227 13 375 728 87 442 2.45e-34 136
MsaG036765 MtrunA17_Chr3g0101141 26.790 377 249 9 371 728 174 542 1.07e-32 133
MsaG036765 MtrunA17_Chr5g0424131 29.949 394 232 15 369 729 118 500 4.43e-30 125
MsaG036765 MtrunA17_Chr5g0445331 25.469 373 259 7 373 728 162 532 2.79e-29 122
MsaG036765 MtrunA17_Chr4g0039661 30.133 375 238 12 369 728 190 555 3.57e-29 122
MsaG036765 MtrunA17_Chr3g0114841 27.681 401 234 16 369 729 117 501 1.83e-28 120
MsaG036765 MtrunA17_Chr3g0125811 27.957 372 247 9 373 728 204 570 1.83e-28 120
MsaG036765 MtrunA17_Chr5g0447691 23.662 355 254 7 388 728 193 544 8.91e-27 115
MsaG036765 MtrunA17_Chr2g0319091 25.714 385 268 8 358 727 197 578 2.29e-26 114
MsaG036765 MtrunA17_Chr8g0383981 26.810 373 252 9 366 727 133 495 5.33e-26 112
MsaG036765 MtrunA17_Chr1g0159461 27.128 376 245 12 373 728 226 592 6.31e-26 113
MsaG036765 MtrunA17_Chr7g0245601 26.359 368 241 9 375 728 441 792 1.01e-25 113
MsaG036765 MtrunA17_Chr4g0076091 24.409 381 252 9 373 729 176 544 3.60e-25 110
MsaG036765 MtrunA17_Chr2g0290241 25.066 379 256 10 371 729 56 426 7.93e-25 108
MsaG036765 MtrunA17_Chr5g0403741 30.303 231 148 6 506 729 51 275 3.57e-24 103
MsaG036765 MtrunA17_Chr4g0057291 24.603 378 261 8 369 727 289 661 7.97e-24 107
MsaG036765 MtrunA17_Chr4g0057891 25.773 388 249 12 369 729 146 521 8.68e-24 105
MsaG036765 MtrunA17_Chr1g0183641 28.533 375 238 15 369 729 120 478 1.41e-22 102
MsaG036765 MtrunA17_Chr2g0294461 24.672 381 266 8 368 728 206 585 1.47e-19 93.2
MsaG036765 MtrunA17_Chr2g0328431 24.129 373 256 10 373 727 290 653 2.01e-19 93.2
MsaG036765 MtrunA17_Chr8g0357601 23.316 386 258 10 369 728 179 552 2.35e-19 92.4
MsaG036765 MtrunA17_Chr1g0200401 26.276 392 246 14 369 727 77 458 3.25e-19 91.3
MsaG036765 MtrunA17_Chr2g0294471 23.969 388 270 10 358 728 197 576 3.34e-19 92.0
MsaG036765 MtrunA17_Chr7g0270031 25.201 373 254 12 373 728 190 554 1.75e-18 89.7
MsaG036765 MtrunA17_Chr2g0328381 25.469 373 252 11 373 727 276 640 3.81e-18 89.0
MsaG036765 MtrunA17_Chr4g0031741 23.989 371 260 8 373 727 285 649 9.84e-18 87.8
MsaG036765 MtrunA17_Chr2g0328391 23.097 381 255 9 373 727 300 668 2.91e-17 86.3
MsaG036765 MtrunA17_Chr4g0031721 22.705 414 278 11 343 727 283 683 6.56e-17 85.1
MsaG036765 MtrunA17_Chr2g0328341 23.822 382 247 9 373 727 273 637 6.80e-17 85.1
MsaG036765 MtrunA17_Chr7g0238891 22.222 378 262 6 373 728 373 740 7.70e-17 85.1
MsaG036765 MtrunA17_Chr2g0328411 22.927 410 279 11 346 727 253 653 2.01e-16 83.6
MsaG036765 MtrunA17_Chr2g0329591 21.990 382 231 10 391 728 93 451 9.35e-16 80.5
MsaG036765 MtrunA17_Chr4g0031731 22.703 370 264 9 373 723 255 621 1.80e-15 80.5
MsaG036765 MtrunA17_Chr4g0031711 22.043 372 272 6 373 727 362 732 8.01e-15 78.6
MsaG036765 MtrunA17_Chr4g0038851 34.118 170 104 2 349 510 19 188 8.72e-15 77.8
MsaG036765 MtrunA17_Chr4g0031701 21.680 369 269 7 373 723 255 621 1.20e-14 77.8
MsaG036765 MtrunA17_Chr2g0328401 22.727 352 245 8 373 706 291 633 2.74e-14 76.6
MsaG036765 MtrunA17_Chr1g0194621 24.198 405 266 16 353 728 126 518 1.13e-13 74.3
MsaG036765 MtrunA17_Chr5g0396491 28.205 195 134 2 349 541 33 223 1.75e-13 73.6
MsaG036765 MtrunA17_Chr5g0401131 21.465 396 251 11 373 728 115 490 2.89e-13 72.8
MsaG036765 MtrunA17_Chr3g0085681 31.724 145 89 2 373 511 26 166 1.72e-12 70.1
MsaG036765 MtrunA17_Chr2g0328361 24.397 373 231 14 373 727 275 614 4.43e-12 69.3
MsaG036765 MtrunA17_Chr2g0328371 24.800 250 170 6 442 678 2 246 1.01e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036765 AT4G00150.1 57.732 388 136 10 345 729 193 555 2.50e-139 421
MsaG036765 AT2G45160.1 48.283 466 200 16 287 729 193 640 3.04e-121 377
MsaG036765 AT3G60630.1 44.773 507 200 16 266 729 154 623 1.01e-112 354
MsaG036765 AT4G36710.1 33.600 375 221 13 370 728 123 485 1.86e-55 198
MsaG036765 AT2G01570.1 30.108 372 237 9 369 728 221 581 1.91e-34 139
MsaG036765 AT5G17490.1 29.333 375 235 12 369 728 157 516 8.98e-32 130
MsaG036765 AT3G03450.1 27.851 377 244 10 369 728 180 545 1.12e-31 130
MsaG036765 AT5G66770.1 27.750 400 252 13 351 728 200 584 1.39e-31 130
MsaG036765 AT2G04890.1 26.005 373 246 8 373 728 54 413 2.94e-30 124
MsaG036765 AT1G14920.1 27.056 377 242 9 369 728 169 529 1.37e-29 124
MsaG036765 AT5G41920.1 24.938 401 278 8 335 728 16 400 1.85e-29 122
MsaG036765 AT3G50650.1 29.508 366 231 10 382 728 185 542 2.16e-29 124
MsaG036765 AT3G54220.1 27.348 362 246 8 375 727 296 649 5.17e-29 123
MsaG036765 AT1G66350.1 26.415 371 248 10 369 729 152 507 2.11e-28 120
MsaG036765 AT5G48150.1 24.462 372 261 8 373 728 123 490 2.21e-28 120
MsaG036765 AT5G48150.4 24.462 372 261 8 373 728 123 490 2.21e-28 120
MsaG036765 AT5G48150.2 24.462 372 261 8 373 728 123 490 2.21e-28 120
MsaG036765 AT5G48150.3 24.462 372 261 8 373 728 123 490 2.21e-28 120
MsaG036765 AT1G50600.3 24.194 372 261 7 373 728 160 526 1.58e-27 117
MsaG036765 AT1G50600.1 24.194 372 261 7 373 728 231 597 3.85e-27 117
MsaG036765 AT4G08250.1 29.288 379 242 14 369 727 104 476 4.08e-27 116
MsaG036765 AT1G50600.2 24.194 372 261 7 373 728 235 601 4.38e-27 117
MsaG036765 AT1G21450.1 25.061 411 270 11 346 728 193 593 6.72e-27 116
MsaG036765 AT4G17230.1 26.178 382 241 8 373 728 159 525 2.07e-26 114
MsaG036765 AT4G17230.2 26.178 382 241 8 373 728 159 525 2.07e-26 114
MsaG036765 AT5G59450.1 23.810 420 279 11 339 728 190 598 1.67e-23 106
MsaG036765 AT1G55580.1 24.771 327 220 6 418 728 129 445 9.16e-20 93.2
MsaG036765 AT1G63100.1 24.747 396 245 14 369 727 249 628 1.29e-19 94.0
MsaG036765 AT1G63100.2 24.747 396 245 14 369 727 274 653 1.37e-19 94.0
MsaG036765 AT1G07520.1 21.390 374 267 8 377 727 323 692 5.70e-19 92.0
MsaG036765 AT1G07520.3 21.390 374 267 8 377 727 324 693 6.33e-19 92.0
MsaG036765 AT1G07520.2 21.390 374 267 8 377 727 159 528 6.99e-19 91.3
MsaG036765 AT1G07520.4 21.390 374 267 8 377 727 159 528 6.99e-19 91.3
MsaG036765 AT3G46600.1 22.762 391 274 9 361 728 194 579 1.52e-17 87.4
MsaG036765 AT3G46600.3 22.762 391 274 9 361 728 162 547 5.64e-17 85.5
MsaG036765 AT3G46600.2 22.849 372 266 8 373 728 5 371 1.06e-16 83.2
MsaG036765 AT1G07530.1 23.342 377 258 9 373 727 397 764 1.62e-16 84.3
MsaG036765 AT4G37650.1 22.335 394 257 10 373 728 147 529 2.42e-15 80.1
MsaG036765 AT1G50420.1 29.897 194 116 5 369 551 54 238 3.81e-15 79.3
MsaG036765 AT5G52510.1 23.274 391 246 12 373 728 269 640 2.72e-13 73.9
MsaG036765 AT2G29065.1 21.485 377 272 7 373 727 253 627 3.27e-13 73.6

Find 154 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7:+43897716 None:intergenic
GGCAATTGAGAAGCTTGTTT+TGG 0.238119 7:-43896427 MsaT036765.1:CDS
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7:+43897845 None:intergenic
AGTCTCTGAATTCTGTTTCA+TGG 0.261651 7:-43896734 MsaT036765.1:CDS
ATTTGTTCTGATTTCCCTTT+TGG 0.265105 7:-43897767 MsaT036765.1:CDS
TCTTCGCCGCCACCGCTTCC+AGG 0.266115 7:+43897323 None:intergenic
TTCCATTATCAATTTCAATA+TGG 0.276508 7:+43897994 None:intergenic
AATTCCGAAGATACCCTTCT+TGG 0.278051 7:-43897474 MsaT036765.1:CDS
TTCCATATTGAAATTGATAA+TGG 0.285700 7:-43897996 MsaT036765.1:CDS
GCTTCCCCATAGGAGAAATT+TGG 0.291304 7:+43897186 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7:+43898199 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7:-43897972 MsaT036765.1:CDS
GTATAAACTGAGCTTGGTTT+TGG 0.329115 7:+43897603 None:intergenic
GAAGATACCCTTCTTGGATT+CGG 0.340738 7:-43897468 MsaT036765.1:CDS
AATGGCGCCTAAGCAGAAAA+TGG 0.344322 7:-43897351 MsaT036765.1:CDS
GTTTATACCTAACCCTAGTT+TGG 0.345137 7:-43897588 MsaT036765.1:CDS
GGAACACGCGCAAGGGATAT+TGG 0.347128 7:-43897222 MsaT036765.1:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7:-43897905 MsaT036765.1:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7:+43897717 None:intergenic
CAGCATCAACAACAATCAAT+TGG 0.353717 7:-43897665 MsaT036765.1:CDS
AAAACAAGCTTCTCAATTGC+CGG 0.355848 7:+43896429 None:intergenic
AAGATACCCTTCTTGGATTC+GGG 0.361865 7:-43897467 MsaT036765.1:CDS
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7:-43896300 MsaT036765.1:CDS
TTTGCACTCCAGTCTTATTC+CGG 0.364854 7:-43896531 MsaT036765.1:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7:+43897846 None:intergenic
CGGGTCAAGAGATGTTTCTT+AGG 0.388186 7:-43897448 MsaT036765.1:CDS
ATCGGTAGAAGCGCCGCCTC+CGG 0.394887 7:+43898141 None:intergenic
CAATCACCAAATTTCTCCTA+TGG 0.395643 7:-43897192 MsaT036765.1:CDS
TATGTATTCTTCAAAGGGTA+AGG 0.404339 7:+43898363 None:intergenic
ACTTATAGACGCCGGTAATC+CGG 0.404547 7:-43897243 MsaT036765.1:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.407880 7:-43897851 MsaT036765.1:CDS
AATATCCCTTGCGCGTGTTC+CGG 0.413029 7:+43897224 None:intergenic
AAATTTGCAAACTGCAGAAC+AGG 0.415407 7:+43897020 None:intergenic
GGGAACCCTGGAAGCGGTGG+CGG 0.418143 7:-43897329 MsaT036765.1:CDS
AAGATGTGGAATGGAGGATT+GGG 0.422443 7:-43898059 MsaT036765.1:CDS
TTGCGCGTGTTCCGGATTAC+CGG 0.426339 7:+43897232 None:intergenic
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7:-43896316 MsaT036765.1:CDS
ATGGCGCCTAAGCAGAAAAT+GGG 0.433521 7:-43897350 MsaT036765.1:CDS
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7:+43896988 None:intergenic
TAATTTGAGAAAGAGCAAAT+AGG 0.442683 7:+43896669 None:intergenic
AGCTTGTGGTATGTTTCTGT+TGG 0.443296 7:+43898090 None:intergenic
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7:-43897071 MsaT036765.1:CDS
TCGATCATCTGAAGTACATC+CGG 0.446716 7:+43896468 None:intergenic
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7:-43896218 MsaT036765.1:CDS
AGGAGTTAGCACTCAGGAAT+GGG 0.448803 7:-43896896 MsaT036765.1:CDS
TTTCCTATGTATTCTTCAAA+GGG 0.453051 7:+43898358 None:intergenic
GTGGCTGAAGCTGAATCTCT+TGG 0.455539 7:+43897531 None:intergenic
AAAGATGTGGAATGGAGGAT+TGG 0.456441 7:-43898060 MsaT036765.1:CDS
TTTGAAGAATACATAGGAAA+AGG 0.459740 7:-43898355 MsaT036765.1:CDS
TTCATCCCTCTACTACCAAA+AGG 0.463150 7:+43897752 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7:-43897701 MsaT036765.1:CDS
TTTGGGCCGTTTGGGTTCGC+AGG 0.468143 7:-43896409 MsaT036765.1:CDS
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7:-43896295 MsaT036765.1:CDS
ATCAAGTGATTCAAGCAAAC+CGG 0.470386 7:+43896512 None:intergenic
TTCTATCCTGCGAACCCAAA+CGG 0.480883 7:+43896403 None:intergenic
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7:-43898262 MsaT036765.1:CDS
CCATTGGCCTCTGCTGCAGA+TGG 0.481891 7:+43897369 None:intergenic
CTCGATTTCGTCGTGGTGTG+AGG 0.482198 7:+43896836 None:intergenic
CGCAGGATAGAACACTTCCT+TGG 0.483347 7:-43896392 MsaT036765.1:CDS
GCCTAAAATTGTCGTAACAT+TGG 0.487648 7:-43896601 MsaT036765.1:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7:+43896992 None:intergenic
GGTTAGGTATAAACTGAGCT+TGG 0.491230 7:+43897597 None:intergenic
CGCTTGTCTTGTGTTGGCAA+AGG 0.491242 7:-43896245 MsaT036765.1:CDS
AGCATCAACAACAATCAATT+GGG 0.491428 7:-43897664 MsaT036765.1:CDS
AAAATCATATGTTGAGGAAA+CGG 0.493724 7:+43896552 None:intergenic
AGAATTCGCTTGTCTTGTGT+TGG 0.495542 7:-43896251 MsaT036765.1:CDS
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7:-43896296 MsaT036765.1:CDS
TCACACGGTAGCGCCGGAGG+CGG 0.497760 7:-43898154 MsaT036765.1:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7:+43896645 None:intergenic
CTTTGCGCCGGTGGTGCTAT+CGG 0.499180 7:+43898123 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7:+43897074 None:intergenic
AATCACCAAATTTCTCCTAT+GGG 0.509811 7:-43897191 MsaT036765.1:CDS
GAATCCAAGAAGGGTATCTT+CGG 0.510787 7:+43897470 None:intergenic
CAGGAGTTAGCACTCAGGAA+TGG 0.511848 7:-43896897 MsaT036765.1:CDS
CCATCTGCAGCAGAGGCCAA+TGG 0.514076 7:-43897369 MsaT036765.1:CDS
CGAGAAATACTATCTGCAAC+CGG 0.516860 7:-43896448 MsaT036765.1:CDS
ACAATGGTCTTCATTTATGC+AGG 0.517675 7:-43896916 MsaT036765.1:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7:-43896294 MsaT036765.1:CDS
TTACCCTTTGAAGAATACAT+AGG 0.522370 7:-43898361 MsaT036765.1:CDS
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7:-43896988 MsaT036765.1:CDS
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7:+43897324 None:intergenic
TCGCAATCACGTAGTGGCTG+CGG 0.530202 7:+43896711 None:intergenic
TCATCCCTCTACTACCAAAA+GGG 0.532544 7:+43897753 None:intergenic
TGTCTTGTGTTGGCAAAGGA+AGG 0.534777 7:-43896241 MsaT036765.1:CDS
ATGGGGAACCCTGGAAGCGG+TGG 0.534973 7:-43897332 MsaT036765.1:CDS
CGATCATCTGAAGTACATCC+GGG 0.536848 7:+43896469 None:intergenic
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7:+43898181 None:intergenic
CTCTTGACCCGAATCCAAGA+AGG 0.539089 7:+43897460 None:intergenic
CAAGCAAACCGGAATAAGAC+TGG 0.539954 7:+43896523 None:intergenic
TCCACATGGAATCCCCTACC+AGG 0.543648 7:+43896282 None:intergenic
GATATTGAAGATGCATCTAT+GGG 0.546979 7:-43897971 MsaT036765.1:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.548006 7:-43896328 MsaT036765.1:CDS
ATTGTTATCCTTTGCGCCGG+TGG 0.548468 7:+43898114 None:intergenic
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7:+43897066 None:intergenic
CTTTGAAAAGGCTTCCCCAT+AGG 0.549307 7:+43897176 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7:-43897698 MsaT036765.1:CDS
GCCTCCGGCGCTACCGTGTG+AGG 0.550488 7:+43898156 None:intergenic
TTCCTCACCATCTGCAGCAG+AGG 0.553713 7:-43897376 MsaT036765.1:CDS
ACGTGATTGCGAAGCAGTTG+TGG 0.554312 7:-43896700 MsaT036765.1:CDS
GTCGGCACATCAGTTTCAGC+AGG 0.555323 7:-43897297 MsaT036765.1:CDS
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7:+43898186 None:intergenic
GTCAAGAGATGTTTCTTAGG+AGG 0.562943 7:-43897445 MsaT036765.1:CDS
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7:-43896308 MsaT036765.1:CDS
GAATGATCTTGATCTTGACT+TGG 0.565052 7:+43898016 None:intergenic
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7:+43896646 None:intergenic
GGCCTCTGCTGCAGATGGTG+AGG 0.565284 7:+43897374 None:intergenic
CGGTGGCGGCGAAGATGTGT+CGG 0.566754 7:-43897315 MsaT036765.1:CDS
AAGCAGAAAATGGGGAACCC+TGG 0.568423 7:-43897341 MsaT036765.1:CDS
TCCTCACACGGTAGCGCCGG+AGG 0.569283 7:-43898157 MsaT036765.1:CDS
TCTTCCTCACACGGTAGCGC+CGG 0.570460 7:-43898160 MsaT036765.1:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7:-43896798 MsaT036765.1:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7:+43897787 None:intergenic
TCGATTTCGTCGTGGTGTGA+GGG 0.574007 7:+43896837 None:intergenic
TTAACAAATCGAAGCACTAA+AGG 0.575268 7:+43896633 None:intergenic
GGTAATCCGGAACACGCGCA+AGG 0.576781 7:-43897230 MsaT036765.1:CDS
CAAATCGAAGCACTAAAGGC+AGG 0.580272 7:+43896637 None:intergenic
GGTATTGTTATCCTTTGCGC+CGG 0.583054 7:+43898111 None:intergenic
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7:-43896984 MsaT036765.1:CDS
CGATAGCACCACCGGCGCAA+AGG 0.585841 7:-43898122 MsaT036765.1:CDS
TGCAGCTGAGAATATGTGAA+AGG 0.595086 7:+43897560 None:intergenic
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7:-43896229 MsaT036765.1:CDS
AATTCTGCTTCTTCTCCACA+TGG 0.598433 7:+43896268 None:intergenic
AAAACCTACTCTTGTCGTCA+GGG 0.598538 7:-43896368 MsaT036765.1:CDS
GCTTCTACCGATAGCACCAC+CGG 0.599672 7:-43898130 MsaT036765.1:CDS
ATGTATTCTTCAAAGGGTAA+GGG 0.603369 7:+43898364 None:intergenic
GGAGTTAGCACTCAGGAATG+GGG 0.606694 7:-43896895 MsaT036765.1:CDS
TGAAGGTAAAAGATGTGGAA+TGG 0.609884 7:-43898068 MsaT036765.1:CDS
AAAATGGGGAACCCTGGAAG+CGG 0.610138 7:-43897335 MsaT036765.1:CDS
CAAGCTGAAGGTAAAAGATG+TGG 0.613564 7:-43898073 MsaT036765.1:CDS
AAATTGTCGTAACATTGGAT+AGG 0.615531 7:-43896596 MsaT036765.1:CDS
ATGTTGAGGAAACGGTGCAT+CGG 0.616599 7:+43896560 None:intergenic
AGAACCCTGACGACAAGAGT+AGG 0.620221 7:+43896364 None:intergenic
AGGTAAAAGATGTGGAATGG+AGG 0.623374 7:-43898065 MsaT036765.1:CDS
TCTTGACCCGAATCCAAGAA+GGG 0.632079 7:+43897461 None:intergenic
ATCACCAAATTTCTCCTATG+GGG 0.632427 7:-43897190 MsaT036765.1:CDS
TCAACACTGTCTTCCTCACA+CGG 0.633334 7:-43898169 MsaT036765.1:CDS
ACGCGCAAGGGATATTGGCG+CGG 0.634995 7:-43897217 MsaT036765.1:CDS
TGGTTCATAACAAACTGATG+AGG 0.638887 7:+43897623 None:intergenic
TCCTGGTAGGGGATTCCATG+TGG 0.639151 7:-43896283 MsaT036765.1:CDS
AGAAACATACCACAAGCTGA+AGG 0.641675 7:-43898085 MsaT036765.1:CDS
GTAATCCGGAACACGCGCAA+GGG 0.641709 7:-43897229 MsaT036765.1:CDS
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7:+43896867 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7:-43898263 MsaT036765.1:CDS
GTGAAGTTACTAAACGTCAA+CGG 0.647933 7:+43896339 None:intergenic
GAGTTAGCACTCAGGAATGG+GGG 0.668622 7:-43896894 MsaT036765.1:CDS
ACTGCTTCGCAATCACGTAG+TGG 0.670419 7:+43896705 None:intergenic
TTATGCAGGAGTTAGCACTC+AGG 0.678645 7:-43896902 MsaT036765.1:CDS
TGGCGCCTAAGCAGAAAATG+GGG 0.679052 7:-43897349 MsaT036765.1:CDS
AACTGAGCTCGATTTCGTCG+TGG 0.682607 7:+43896829 None:intergenic
TGTCTGTGTCAATGTCCACC+CGG 0.687910 7:-43896487 MsaT036765.1:CDS
GCTGCAGAACTTATAGACGC+CGG 0.689078 7:-43897251 MsaT036765.1:CDS
CCAGCTAAAAGACTCAATTG+TGG 0.702219 7:-43897509 MsaT036765.1:CDS
TCATCTGAAGTACATCCGGG+TGG 0.714970 7:+43896472 None:intergenic
GTGTGAGGAAGACAGTGTTG+AGG 0.783398 7:+43898171 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 43896209 43898398 43896209 ID=MsaG036765
Chr7 mRNA 43896209 43898398 43896209 ID=MsaT036765.1;Parent=MsaG036765
Chr7 exon 43896209 43898398 43896209 ID=MsaT036765.1.exon1;Parent=MsaT036765.1
Chr7 CDS 43896209 43898398 43896209 ID=cds.MsaT036765.1;Parent=MsaT036765.1
Gene Sequence

>MsaT036765.1

ATGAAGGCTATGCCCTTACCCTTTGAAGAATACATAGGAAAAGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCACAACAGCAAGAACAGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGGAGGCGGCGCTTCTACCGATAGCACCACCGGCGCAAAGGATAACAATACCAACAGAAACATACCACAAGCTGAAGGTAAAAGATGTGGAATGGAGGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGGTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATACCTAACCCTAGTTTGGTTTTTCCTTTCACATATTCTCAGCTGCAAGAAAACCAAGAGATTCAGCTTCAGCCACCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAGCAGCAACATCAGCAGCAGCTTCAATTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTGTCGGCACATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTGCTTCTTCAATCAAATGTTAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGACATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTCAGGAATGGGGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTCAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTTGAGTCTCTGAATTCTGTTTCATGGCCGCAGCCACTACGTGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTTGTTAAGCAGCTCATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACCGATGCACCGTTTCCTCAACATATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTTGAATCACTTGATGCTGTCTGTGTCAATGTCCACCCGGATGTACTTCAGATGATCGAGAAATACTATCTGCAACCGGCAATTGAGAAGCTTGTTTTGGGCCGTTTGGGTTCGCAGGATAGAACACTTCCTTGGAAAAACCTACTCTTGTCGTCAGGGTTCTCTCCGTTGACGTTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAATTCGCTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>MsaT036765.1

MKAMPLPFEEYIGKGSSVVASSDSYLFSQQQEQFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAKDNNTNRNIPQAEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFGSRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSIGSLDEKLPHQFVMNQNQAQFIPNPSLVFPFTYSQLQENQEIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRPMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAQGILARLNHQISPMGKPFQRAAFYFKEALQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVCVNVHPDVLQMIEKYYLQPAIEKLVLGRLGSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*