AlfalfaGEDB | MsaG036860

M. sativa ssp. caerulea / MsaG036860

KEGG: -
GO: -
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036860	GAU19318.1	57.143	119	48	2	1	117	18	135	8.42e-36	130

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036860	sp\|F4JZT3\|ARR24_ARATH	39.623	106	60	3	7	112	29	130	3.06e-15	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036860	tr\|A0A2Z6MAF0\|A0A2Z6MAF0_TRISU	57.143	119	48	2	1	117	18	135	4.02e-36	130

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TFs/TRs:

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Gene ID	Type	Classification
MsaG036860	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG036860	0.837196	1.098525e-56	3.931026e-54
MsaG000047	MsaG036860	0.800420	2.430561e-48	3.317622e-46
MsaG000048	MsaG036860	0.838537	4.987538e-57	1.860026e-54
MsaG000069	MsaG036860	0.815784	1.342026e-51	2.646186e-49
MsaG000137	MsaG036860	0.859233	9.334463e-63	7.049589e-60
MsaG000138	MsaG036860	0.842105	5.889873e-58	2.457418e-55
MsaG000202	MsaG036860	0.931127	1.642407e-93	7.327778e-89
MsaG000350	MsaG036860	0.805689	2.001384e-49	3.083243e-47
MsaG000416	MsaG036860	0.876474	2.824614e-68	4.337898e-65
MsaG000461	MsaG036860	0.812016	9.002140e-51	1.615023e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036860	MtrunA17_Chr7g0262351	40.171	117	65	3	1	117	27	138	2.75e-22	85.9
MsaG036860	MtrunA17_Chr8g0364781	40.517	116	65	3	1	115	17	129	2.00e-17	73.6
MsaG036860	MtrunA17_Chr7g0262671	40.506	79	36	3	4	80	17	86	6.03e-11	55.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG036860	AT5G26594.1	39.623	106	60	3	7	112	29	130	3.11e-16	70.5
MsaG036860	AT3G04280.1	36.538	104	64	1	1	104	27	128	7.25e-14	64.7
MsaG036860	AT3G04280.2	36.538	104	64	1	1	104	27	128	7.25e-14	64.7
MsaG036860	AT3G04280.3	36.538	104	64	1	1	104	27	128	7.25e-14	64.7

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Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCTATTGGAAATACT+TGG	0.546811	7:-46162463	MsaT036860.1:CDS
AACACACCAACAATCAAGTT+AGG	0.407049	7:+46161909	None:intergenic
AAGGACTAGACTTAATTGAT+TGG	0.427884	7:-46162408	MsaT036860.1:CDS
ACACACCAACAATCAAGTTA+GGG	0.561074	7:+46161910	None:intergenic
ACACTCTACTTCTGTCAGGC+GGG	0.488843	7:+46161881	None:intergenic
ACCTTAATCCCATCCATGAC+CGG	0.504581	7:+46162343	None:intergenic
AGGACTAGACTTAATTGATT+GGG	0.396517	7:-46162407	MsaT036860.1:CDS
AGGCAAATGCCGGTCATGGA+TGG	0.473023	7:-46162352	MsaT036860.1:CDS
AGGTACCCTAACTTGATTGT+TGG	0.504642	7:-46161915	MsaT036860.1:CDS
CAATTAAGTCTAGTCCTTCT+TGG	0.272460	7:+46162413	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	46161725	46162518	46161725	ID=MsaG036860
Chr7	mRNA	46161725	46162518	46161725	ID=MsaT036860.1;Parent=MsaG036860
Chr7	exon	46161725	46161961	46161725	ID=MsaT036860.1.exon2;Parent=MsaT036860.1
Chr7	CDS	46161725	46161961	46161725	ID=cds.MsaT036860.1;Parent=MsaT036860.1
Chr7	exon	46162345	46162518	46162345	ID=MsaT036860.1.exon1;Parent=MsaT036860.1
Chr7	CDS	46162345	46162518	46162345	ID=cds.MsaT036860.1;Parent=MsaT036860.1

Gene Sequence

>MsaT036860.1

ATGGATAATGACGATAATACACGTCTCATTCATAAAGATCTATTGGAAATACTTGGTGTAGAAGATCATACAGTGAAAAATGGCCAAGAAGGACTAGACTTAATTGATTGGGGTGCTAAACAATTTGAGCTGATTCTCATTGATAGGCAAATGCCGGTCATGGATGGGATTAAGGCGATGAAGGTCTTGCGCACAATAAGGTACCCTAACTTGATTGTTGGTGTGTTGGAGCCCCGCCTGACAGAAGTAGAGTGTGAAGAATTTTTTAGGGCGGGGCTGGATGATATCCATGATGAAGGAAAACCCTTGTCTCTTGATGAACTTAAAGTCATTGTTGAATCAGTCCCCACCAGGTCGAAATATGGAAAAATCACATTAGGATATTATGTTATTTTTCTATATACTAAATAG

Protein sequence

>MsaT036860.1

MDNDDNTRLIHKDLLEILGVEDHTVKNGQEGLDLIDWGAKQFELILIDRQMPVMDGIKAMKVLRTIRYPNLIVGVLEPRLTEVECEEFFRAGLDDIHDEGKPLSLDELKVIVESVPTRSKYGKITLGYYVIFLYTK*