Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036906 | XP_039683591.1 | 97.111 | 623 | 9 | 2 | 1 | 620 | 116 | 732 | 0.0 | 1230 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036906 | sp|O81316|SCL6_ARATH | 57.179 | 397 | 139 | 11 | 227 | 620 | 187 | 555 | 4.07e-139 | 419 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036906 | tr|A0A396GWJ9|A0A396GWJ9_MEDTR | 97.111 | 623 | 9 | 2 | 1 | 620 | 116 | 732 | 0.0 | 1230 |
Gene ID | Type | Classification |
---|---|---|
MsaG036906 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036906 | MtrunA17_Chr7g0230771 | 97.111 | 623 | 9 | 2 | 1 | 620 | 116 | 732 | 0.0 | 1230 |
MsaG036906 | MtrunA17_Chr7g0230731 | 96.950 | 623 | 8 | 3 | 1 | 620 | 115 | 729 | 0.0 | 1229 |
MsaG036906 | MtrunA17_Chr4g0012071 | 54.159 | 541 | 185 | 13 | 95 | 620 | 60 | 552 | 1.86e-180 | 522 |
MsaG036906 | MtrunA17_Chr8g0373561 | 36.216 | 370 | 219 | 11 | 261 | 620 | 180 | 542 | 3.19e-61 | 213 |
MsaG036906 | MtrunA17_Chr2g0306641 | 32.368 | 380 | 223 | 9 | 260 | 619 | 122 | 487 | 6.19e-44 | 164 |
MsaG036906 | MtrunA17_Chr7g0224271 | 27.169 | 438 | 267 | 11 | 208 | 620 | 264 | 674 | 8.19e-37 | 146 |
MsaG036906 | MtrunA17_Chr3g0110971 | 28.684 | 380 | 243 | 7 | 260 | 619 | 216 | 587 | 1.01e-36 | 145 |
MsaG036906 | MtrunA17_Chr8g0376381 | 28.267 | 375 | 236 | 9 | 260 | 619 | 166 | 522 | 6.32e-36 | 142 |
MsaG036906 | MtrunA17_Chr4g0038761 | 30.081 | 369 | 228 | 12 | 266 | 618 | 87 | 441 | 1.11e-34 | 137 |
MsaG036906 | MtrunA17_Chr3g0101141 | 26.790 | 377 | 249 | 9 | 262 | 619 | 174 | 542 | 7.04e-33 | 133 |
MsaG036906 | MtrunA17_Chr5g0424131 | 30.435 | 391 | 234 | 15 | 260 | 620 | 118 | 500 | 1.86e-30 | 125 |
MsaG036906 | MtrunA17_Chr5g0445331 | 25.469 | 373 | 259 | 7 | 264 | 619 | 162 | 532 | 8.93e-30 | 124 |
MsaG036906 | MtrunA17_Chr4g0039661 | 30.133 | 375 | 238 | 12 | 260 | 619 | 190 | 555 | 1.33e-29 | 123 |
MsaG036906 | MtrunA17_Chr3g0125811 | 27.957 | 372 | 247 | 9 | 264 | 619 | 204 | 570 | 8.07e-29 | 121 |
MsaG036906 | MtrunA17_Chr3g0114841 | 27.681 | 401 | 234 | 16 | 260 | 620 | 117 | 501 | 1.16e-28 | 120 |
MsaG036906 | MtrunA17_Chr5g0447691 | 23.662 | 355 | 254 | 7 | 279 | 619 | 193 | 544 | 6.50e-27 | 115 |
MsaG036906 | MtrunA17_Chr2g0319091 | 25.714 | 385 | 268 | 8 | 249 | 618 | 197 | 578 | 1.49e-26 | 114 |
MsaG036906 | MtrunA17_Chr8g0383981 | 26.810 | 373 | 252 | 9 | 257 | 618 | 133 | 495 | 1.70e-26 | 113 |
MsaG036906 | MtrunA17_Chr7g0245601 | 26.359 | 368 | 241 | 9 | 266 | 619 | 441 | 792 | 2.99e-26 | 114 |
MsaG036906 | MtrunA17_Chr1g0159461 | 27.128 | 376 | 245 | 12 | 264 | 619 | 226 | 592 | 4.17e-26 | 113 |
MsaG036906 | MtrunA17_Chr4g0076091 | 24.409 | 381 | 252 | 9 | 264 | 620 | 176 | 544 | 3.72e-25 | 109 |
MsaG036906 | MtrunA17_Chr2g0290241 | 25.066 | 379 | 256 | 10 | 262 | 620 | 56 | 426 | 4.32e-25 | 108 |
MsaG036906 | MtrunA17_Chr5g0403741 | 30.303 | 231 | 148 | 6 | 397 | 620 | 51 | 275 | 2.93e-24 | 102 |
MsaG036906 | MtrunA17_Chr4g0057891 | 25.389 | 386 | 253 | 11 | 260 | 620 | 146 | 521 | 4.59e-24 | 106 |
MsaG036906 | MtrunA17_Chr4g0057291 | 24.074 | 378 | 263 | 7 | 260 | 618 | 289 | 661 | 1.08e-23 | 105 |
MsaG036906 | MtrunA17_Chr1g0183641 | 28.533 | 375 | 238 | 15 | 260 | 620 | 120 | 478 | 6.42e-23 | 102 |
MsaG036906 | MtrunA17_Chr2g0294461 | 24.672 | 381 | 266 | 8 | 259 | 619 | 206 | 585 | 1.11e-19 | 93.2 |
MsaG036906 | MtrunA17_Chr2g0328431 | 23.358 | 411 | 278 | 11 | 236 | 618 | 252 | 653 | 1.14e-19 | 93.2 |
MsaG036906 | MtrunA17_Chr8g0357601 | 23.316 | 386 | 258 | 10 | 260 | 619 | 179 | 552 | 1.20e-19 | 92.8 |
MsaG036906 | MtrunA17_Chr2g0294471 | 23.545 | 378 | 271 | 9 | 259 | 619 | 200 | 576 | 2.02e-19 | 92.4 |
MsaG036906 | MtrunA17_Chr1g0200401 | 26.276 | 392 | 246 | 14 | 260 | 618 | 77 | 458 | 2.74e-19 | 91.3 |
MsaG036906 | MtrunA17_Chr7g0270031 | 25.201 | 373 | 254 | 12 | 264 | 619 | 190 | 554 | 7.74e-19 | 90.5 |
MsaG036906 | MtrunA17_Chr2g0328381 | 25.469 | 373 | 252 | 11 | 264 | 618 | 276 | 640 | 1.60e-18 | 89.7 |
MsaG036906 | MtrunA17_Chr4g0031741 | 23.989 | 371 | 260 | 8 | 264 | 618 | 285 | 649 | 1.35e-17 | 86.7 |
MsaG036906 | MtrunA17_Chr2g0328411 | 23.114 | 411 | 279 | 11 | 236 | 618 | 252 | 653 | 1.70e-17 | 86.7 |
MsaG036906 | MtrunA17_Chr2g0328341 | 23.822 | 382 | 247 | 9 | 264 | 618 | 273 | 637 | 2.61e-17 | 85.9 |
MsaG036906 | MtrunA17_Chr2g0328391 | 23.097 | 381 | 255 | 9 | 264 | 618 | 300 | 668 | 2.90e-17 | 85.9 |
MsaG036906 | MtrunA17_Chr4g0031721 | 22.705 | 414 | 278 | 11 | 234 | 618 | 283 | 683 | 5.27e-17 | 85.1 |
MsaG036906 | MtrunA17_Chr7g0238891 | 22.222 | 378 | 262 | 6 | 264 | 619 | 373 | 740 | 8.88e-17 | 84.3 |
MsaG036906 | MtrunA17_Chr2g0329591 | 20.788 | 457 | 293 | 11 | 209 | 619 | 18 | 451 | 9.33e-17 | 83.2 |
MsaG036906 | MtrunA17_Chr4g0031731 | 22.703 | 370 | 264 | 9 | 264 | 614 | 255 | 621 | 1.36e-15 | 80.5 |
MsaG036906 | MtrunA17_Chr4g0031711 | 22.043 | 372 | 272 | 6 | 264 | 618 | 362 | 732 | 5.78e-15 | 78.6 |
MsaG036906 | MtrunA17_Chr4g0038851 | 34.118 | 170 | 104 | 2 | 240 | 401 | 19 | 188 | 7.94e-15 | 77.4 |
MsaG036906 | MtrunA17_Chr4g0031701 | 21.680 | 369 | 269 | 7 | 264 | 614 | 255 | 621 | 1.01e-14 | 77.4 |
MsaG036906 | MtrunA17_Chr2g0328401 | 23.810 | 357 | 235 | 11 | 264 | 597 | 291 | 633 | 2.42e-14 | 76.3 |
MsaG036906 | MtrunA17_Chr1g0194621 | 23.934 | 422 | 279 | 17 | 228 | 619 | 109 | 518 | 5.65e-14 | 74.7 |
MsaG036906 | MtrunA17_Chr5g0401131 | 21.465 | 396 | 251 | 11 | 264 | 619 | 115 | 490 | 1.19e-13 | 73.6 |
MsaG036906 | MtrunA17_Chr5g0396491 | 30.303 | 165 | 113 | 1 | 240 | 402 | 33 | 197 | 2.14e-13 | 72.8 |
MsaG036906 | MtrunA17_Chr3g0085681 | 31.724 | 145 | 89 | 2 | 264 | 402 | 26 | 166 | 1.31e-12 | 70.1 |
MsaG036906 | MtrunA17_Chr2g0328361 | 24.397 | 373 | 231 | 14 | 264 | 618 | 275 | 614 | 1.66e-12 | 70.5 |
MsaG036906 | MtrunA17_Chr2g0328371 | 24.800 | 250 | 170 | 6 | 333 | 569 | 2 | 246 | 6.01e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG036906 | AT4G00150.1 | 57.179 | 397 | 139 | 11 | 227 | 620 | 187 | 555 | 4.14e-140 | 419 |
MsaG036906 | AT2G45160.1 | 48.283 | 466 | 200 | 16 | 178 | 620 | 193 | 640 | 1.81e-122 | 377 |
MsaG036906 | AT3G60630.1 | 44.773 | 507 | 200 | 16 | 157 | 620 | 154 | 623 | 1.86e-114 | 355 |
MsaG036906 | AT4G36710.1 | 33.600 | 375 | 221 | 13 | 261 | 619 | 123 | 485 | 3.31e-56 | 198 |
MsaG036906 | AT2G01570.1 | 30.108 | 372 | 237 | 9 | 260 | 619 | 221 | 581 | 1.04e-34 | 139 |
MsaG036906 | AT5G17490.1 | 29.521 | 376 | 233 | 13 | 260 | 619 | 157 | 516 | 4.21e-32 | 130 |
MsaG036906 | AT5G66770.1 | 27.750 | 400 | 252 | 13 | 242 | 619 | 200 | 584 | 9.25e-32 | 130 |
MsaG036906 | AT3G03450.1 | 27.851 | 377 | 244 | 10 | 260 | 619 | 180 | 545 | 1.12e-31 | 130 |
MsaG036906 | AT2G04890.1 | 26.558 | 369 | 249 | 8 | 264 | 619 | 54 | 413 | 8.52e-31 | 125 |
MsaG036906 | AT1G14920.1 | 27.056 | 377 | 242 | 9 | 260 | 619 | 169 | 529 | 8.28e-30 | 124 |
MsaG036906 | AT3G50650.1 | 29.508 | 366 | 231 | 10 | 273 | 619 | 185 | 542 | 1.61e-29 | 123 |
MsaG036906 | AT5G41920.1 | 25.886 | 367 | 259 | 7 | 260 | 619 | 40 | 400 | 1.90e-29 | 121 |
MsaG036906 | AT3G54220.1 | 27.348 | 362 | 246 | 8 | 266 | 618 | 296 | 649 | 4.24e-29 | 123 |
MsaG036906 | AT1G66350.1 | 26.486 | 370 | 247 | 10 | 260 | 619 | 152 | 506 | 1.28e-28 | 120 |
MsaG036906 | AT5G48150.1 | 24.462 | 372 | 261 | 8 | 264 | 619 | 123 | 490 | 1.29e-28 | 120 |
MsaG036906 | AT5G48150.4 | 24.462 | 372 | 261 | 8 | 264 | 619 | 123 | 490 | 1.29e-28 | 120 |
MsaG036906 | AT5G48150.2 | 24.462 | 372 | 261 | 8 | 264 | 619 | 123 | 490 | 1.29e-28 | 120 |
MsaG036906 | AT5G48150.3 | 24.462 | 372 | 261 | 8 | 264 | 619 | 123 | 490 | 1.29e-28 | 120 |
MsaG036906 | AT4G08250.1 | 28.846 | 416 | 260 | 16 | 233 | 618 | 67 | 476 | 7.05e-28 | 117 |
MsaG036906 | AT1G50600.3 | 24.194 | 372 | 261 | 7 | 264 | 619 | 160 | 526 | 8.13e-28 | 118 |
MsaG036906 | AT1G50600.1 | 24.194 | 372 | 261 | 7 | 264 | 619 | 231 | 597 | 2.31e-27 | 117 |
MsaG036906 | AT1G50600.2 | 24.194 | 372 | 261 | 7 | 264 | 619 | 235 | 601 | 2.48e-27 | 117 |
MsaG036906 | AT1G21450.1 | 25.061 | 411 | 270 | 11 | 237 | 619 | 193 | 593 | 4.87e-27 | 116 |
MsaG036906 | AT4G17230.1 | 26.178 | 382 | 241 | 8 | 264 | 619 | 159 | 525 | 1.08e-26 | 114 |
MsaG036906 | AT4G17230.2 | 26.178 | 382 | 241 | 8 | 264 | 619 | 159 | 525 | 1.08e-26 | 114 |
MsaG036906 | AT5G59450.1 | 23.810 | 420 | 279 | 11 | 230 | 619 | 190 | 598 | 1.39e-23 | 105 |
MsaG036906 | AT1G55580.1 | 24.771 | 327 | 220 | 6 | 309 | 619 | 129 | 445 | 8.26e-20 | 93.2 |
MsaG036906 | AT1G63100.1 | 24.747 | 396 | 245 | 14 | 260 | 618 | 249 | 628 | 2.78e-19 | 92.4 |
MsaG036906 | AT1G63100.2 | 24.747 | 396 | 245 | 14 | 260 | 618 | 274 | 653 | 2.80e-19 | 92.4 |
MsaG036906 | AT1G07520.1 | 21.543 | 376 | 266 | 9 | 267 | 618 | 322 | 692 | 3.29e-19 | 92.4 |
MsaG036906 | AT1G07520.3 | 21.543 | 376 | 266 | 9 | 267 | 618 | 323 | 693 | 3.44e-19 | 92.4 |
MsaG036906 | AT1G07520.2 | 21.543 | 376 | 266 | 9 | 267 | 618 | 158 | 528 | 6.07e-19 | 90.9 |
MsaG036906 | AT1G07520.4 | 21.543 | 376 | 266 | 9 | 267 | 618 | 158 | 528 | 6.07e-19 | 90.9 |
MsaG036906 | AT3G46600.1 | 22.762 | 391 | 274 | 9 | 252 | 619 | 194 | 579 | 1.40e-17 | 87.0 |
MsaG036906 | AT3G46600.3 | 22.762 | 391 | 274 | 9 | 252 | 619 | 162 | 547 | 3.13e-17 | 85.9 |
MsaG036906 | AT3G46600.2 | 22.849 | 372 | 266 | 8 | 264 | 619 | 5 | 371 | 5.55e-17 | 83.6 |
MsaG036906 | AT1G07530.1 | 23.342 | 377 | 258 | 9 | 264 | 618 | 397 | 764 | 2.38e-16 | 83.6 |
MsaG036906 | AT4G37650.1 | 22.335 | 394 | 257 | 10 | 264 | 619 | 147 | 529 | 1.22e-15 | 80.5 |
MsaG036906 | AT1G50420.1 | 29.897 | 194 | 116 | 5 | 260 | 442 | 54 | 238 | 4.66e-15 | 78.6 |
MsaG036906 | AT5G52510.1 | 23.274 | 391 | 246 | 12 | 264 | 619 | 269 | 640 | 1.56e-13 | 74.3 |
MsaG036906 | AT2G29065.1 | 21.485 | 377 | 272 | 7 | 264 | 618 | 253 | 627 | 1.99e-13 | 73.9 |
Find 123 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTGTGAAGAACTGAAATT+AGG | 0.187840 | 7:-47062954 | None:intergenic |
GGCAATTGAGAAGCTTGTTT+TGG | 0.238119 | 7:+47064243 | MsaT036906.1:CDS |
AAGTTACCATTTGAAGAAAT+AGG | 0.249425 | 7:-47062825 | None:intergenic |
AGTCTCTGAATTCTGTTTCA+TGG | 0.261651 | 7:+47063936 | MsaT036906.1:CDS |
ATTTGTTCTGATTTCCCTTT+TGG | 0.265105 | 7:+47062903 | MsaT036906.1:CDS |
TCTTCGCCGCCACCGCTTCC+AGG | 0.266115 | 7:-47063347 | None:intergenic |
TTCCATTATCAATTTCAATA+TGG | 0.276508 | 7:-47062676 | None:intergenic |
AATTCCGAAGATACCCTTCT+TGG | 0.278051 | 7:+47063196 | MsaT036906.1:CDS |
TTCCATATTGAAATTGATAA+TGG | 0.285700 | 7:+47062674 | MsaT036906.1:CDS |
GCTTCCCCATAGGAGAAATT+TGG | 0.291304 | 7:-47063484 | None:intergenic |
GCATAAACTGAGCTTGGTTT+TGG | 0.318676 | 7:-47063067 | None:intergenic |
AGATATTGAAGATGCATCTA+TGG | 0.323147 | 7:+47062698 | MsaT036906.1:CDS |
AATGGCGCATAAGCAGAAAA+TGG | 0.330464 | 7:+47063319 | MsaT036906.1:CDS |
GTTTATGCCTAACCCTAGTT+TGG | 0.334769 | 7:+47063082 | MsaT036906.1:CDS |
GAAGATACCCTTCTTGGATT+CGG | 0.340738 | 7:+47063202 | MsaT036906.1:CDS |
GGAACACGCGCAAGGGATAT+TGG | 0.347128 | 7:+47063448 | MsaT036906.1:CDS |
CAACAAGATGTTGAATTCAA+TGG | 0.350188 | 7:+47062765 | MsaT036906.1:CDS |
CTTGTGAAGAACTGAAATTA+GGG | 0.351845 | 7:-47062953 | None:intergenic |
AAAACAAGCTTCTCAATTGC+CGG | 0.355848 | 7:-47064241 | None:intergenic |
AAGATACCCTTCTTGGATTC+GGG | 0.361865 | 7:+47063203 | MsaT036906.1:CDS |
TGTTTGGTGCAGAGGATTCC+TGG | 0.364499 | 7:+47064370 | MsaT036906.1:CDS |
TTTGCACTCCAGTCTTATTC+CGG | 0.364854 | 7:+47064139 | MsaT036906.1:CDS |
AGTTACCATTTGAAGAAATA+GGG | 0.368741 | 7:-47062824 | None:intergenic |
CGGGTCAAGAGATGTTTCTT+AGG | 0.388186 | 7:+47063222 | MsaT036906.1:CDS |
CAATCACCAAATTTCTCCTA+TGG | 0.395643 | 7:+47063478 | MsaT036906.1:CDS |
ACTTATAGACGCCGGTAATC+CGG | 0.404547 | 7:+47063427 | MsaT036906.1:CDS |
CTTGACCCTATTTCTTCAAA+TGG | 0.407880 | 7:+47062819 | MsaT036906.1:CDS |
AATATCCCTTGCGCGTGTTC+CGG | 0.413029 | 7:-47063446 | None:intergenic |
AAATTTGCAAACTGCAGAAC+AGG | 0.415407 | 7:-47063650 | None:intergenic |
GGGAACCCTGGAAGCGGTGG+CGG | 0.418143 | 7:+47063341 | MsaT036906.1:CDS |
AAGATGTGGAATGGAGGATT+GGG | 0.422443 | 7:+47062611 | None:intergenic |
TTGCGCGTGTTCCGGATTAC+CGG | 0.426339 | 7:-47063438 | None:intergenic |
ATGGCGCATAAGCAGAAAAT+GGG | 0.428884 | 7:+47063320 | MsaT036906.1:CDS |
AGAGTCGCAGGCAGAGTGTT+TGG | 0.429838 | 7:+47064354 | MsaT036906.1:CDS |
CCACAGCTTCAAGCAATGCT+TGG | 0.439953 | 7:-47063682 | None:intergenic |
TAATTTGAGAAAGAGCAAAT+AGG | 0.442683 | 7:-47064001 | None:intergenic |
ACTAGCCTCTTGCTCAAGAT+TGG | 0.445518 | 7:+47063599 | MsaT036906.1:CDS |
TCGATCATCTGAAGTACATC+CGG | 0.446716 | 7:-47064202 | None:intergenic |
ATCTCATCTCGGTTTCAACT+TGG | 0.447156 | 7:+47064452 | MsaT036906.1:CDS |
GTGGCTGAAGCTGAATCTCT+TGG | 0.455539 | 7:-47063139 | None:intergenic |
AAAGATGTGGAATGGAGGAT+TGG | 0.456441 | 7:+47062610 | None:intergenic |
TTCATCCCTCTACTACCAAA+AGG | 0.463150 | 7:-47062918 | None:intergenic |
TCACAAGTTTCACTTTCTCA+TGG | 0.465348 | 7:+47062969 | MsaT036906.1:CDS |
TTTGGGCCGTTTGGGTTCGC+AGG | 0.468143 | 7:+47064261 | MsaT036906.1:CDS |
GGTGCAGAGGATTCCTGGTA+GGG | 0.470286 | 7:+47064375 | MsaT036906.1:CDS |
ATCAAGTGATTCAAGCAAAC+CGG | 0.470386 | 7:-47064158 | None:intergenic |
TCGCAATCGCGTAGTGGCTG+CGG | 0.474481 | 7:-47063959 | None:intergenic |
GGTTAGGCATAAACTGAGCT+TGG | 0.478491 | 7:-47063073 | None:intergenic |
TTCTATCCTGCGAACCCAAA+CGG | 0.480883 | 7:-47064267 | None:intergenic |
CTCAATTTCATCGTGGTGTG+AGG | 0.481171 | 7:-47063834 | None:intergenic |
CCATTGGCCTCTGCTGCAGA+TGG | 0.483207 | 7:-47063301 | None:intergenic |
CGCAGGATAGAACACTTCCT+TGG | 0.483347 | 7:+47064278 | MsaT036906.1:CDS |
GCCTAAAATTGTCGTAACAT+TGG | 0.487648 | 7:+47064069 | MsaT036906.1:CDS |
AGCTTCAAGCAATGCTTGGT+TGG | 0.488113 | 7:-47063678 | None:intergenic |
CGCTTGTCTTGTGTTGGCAA+AGG | 0.491242 | 7:+47064425 | MsaT036906.1:CDS |
AGAATTCGCTTGTCTTGTGT+TGG | 0.495542 | 7:+47064419 | MsaT036906.1:CDS |
TGGTGCAGAGGATTCCTGGT+AGG | 0.496504 | 7:+47064374 | MsaT036906.1:CDS |
ACGCGATTGCGAAGCAGTTG+TGG | 0.497464 | 7:+47063970 | MsaT036906.1:CDS |
ATCTTGAGCAAGAGGCTAGT+TGG | 0.505941 | 7:-47063596 | None:intergenic |
AATCACCAAATTTCTCCTAT+GGG | 0.509811 | 7:+47063479 | MsaT036906.1:CDS |
GAATCCAAGAAGGGTATCTT+CGG | 0.510787 | 7:-47063200 | None:intergenic |
CCATCTGCAGCAGAGGCCAA+TGG | 0.514076 | 7:+47063301 | MsaT036906.1:CDS |
CGAGAAATACTATCTGCAAC+CGG | 0.516860 | 7:+47064222 | MsaT036906.1:CDS |
ACAATGGTCTTCATTTATGC+AGG | 0.517675 | 7:+47063754 | MsaT036906.1:CDS |
GTGCAGAGGATTCCTGGTAG+GGG | 0.518621 | 7:+47064376 | MsaT036906.1:CDS |
AAAATCATATGCTGAGGAAA+CGG | 0.519993 | 7:-47064118 | None:intergenic |
CAGCATCAACAACAATCAGT+TGG | 0.520795 | 7:+47063005 | MsaT036906.1:CDS |
AGCATCAACAACAATCAGTT+GGG | 0.523329 | 7:+47063006 | MsaT036906.1:CDS |
CCAAGCATTGCTTGAAGCTG+TGG | 0.524919 | 7:+47063682 | MsaT036906.1:CDS |
CTTCGCCGCCACCGCTTCCA+GGG | 0.526440 | 7:-47063346 | None:intergenic |
TCATCCCTCTACTACCAAAA+GGG | 0.532544 | 7:-47062917 | None:intergenic |
TGTCTTGTGTTGGCAAAGGA+AGG | 0.534777 | 7:+47064429 | MsaT036906.1:CDS |
ATGGGGAACCCTGGAAGCGG+TGG | 0.534973 | 7:+47063338 | MsaT036906.1:CDS |
CGATCATCTGAAGTACATCC+GGG | 0.536848 | 7:-47064201 | None:intergenic |
CTCTTGACCCGAATCCAAGA+AGG | 0.539089 | 7:-47063210 | None:intergenic |
CAAGCAAACCGGAATAAGAC+TGG | 0.539954 | 7:-47064147 | None:intergenic |
CGGTGGCGGCGAAGATGTGT+CGG | 0.546303 | 7:+47063355 | MsaT036906.1:CDS |
GATATTGAAGATGCATCTAT+GGG | 0.546979 | 7:+47062699 | MsaT036906.1:CDS |
TAGTAACTTCACAGAGTCGC+AGG | 0.548006 | 7:+47064342 | MsaT036906.1:CDS |
AAGCACCAATCTTGAGCAAG+AGG | 0.549041 | 7:-47063604 | None:intergenic |
CTTTGAAAAGGCTTCCCCAT+AGG | 0.549307 | 7:-47063494 | None:intergenic |
CAAGTTTCACTTTCTCATGG+TGG | 0.549648 | 7:+47062972 | MsaT036906.1:CDS |
GCACTAAAGGCAGGTACGAT+GGG | 0.551600 | 7:-47064024 | None:intergenic |
TTCCTCACCATCTGCAGCAG+AGG | 0.553713 | 7:+47063294 | MsaT036906.1:CDS |
AAGCAGAAAATGGGGAACCC+TGG | 0.559202 | 7:+47063329 | MsaT036906.1:CDS |
TCCTGGTAGGGGATTTCATG+TGG | 0.561432 | 7:+47064387 | MsaT036906.1:CDS |
GTCAAGAGATGTTTCTTAGG+AGG | 0.562943 | 7:+47063225 | MsaT036906.1:CDS |
AGGCAGAGTGTTTGGTGCAG+AGG | 0.564913 | 7:+47064362 | MsaT036906.1:CDS |
GAATGATCTTGATCTTGACT+TGG | 0.565052 | 7:-47062654 | None:intergenic |
GGCCTCTGCTGCAGATGGTG+AGG | 0.565284 | 7:-47063296 | None:intergenic |
GAGAATCTGAAGCAATATGC+TGG | 0.570600 | 7:+47063872 | MsaT036906.1:CDS |
TCCACATGAAATCCCCTACC+AGG | 0.574086 | 7:-47064388 | None:intergenic |
TTAACAAATCGAAGCACTAA+AGG | 0.575268 | 7:-47064037 | None:intergenic |
GGTAATCCGGAACACGCGCA+AGG | 0.576781 | 7:+47063440 | MsaT036906.1:CDS |
GCATTGCTTGAAGCTGTGGA+AGG | 0.584725 | 7:+47063686 | MsaT036906.1:CDS |
AGCACTAAAGGCAGGTACGA+TGG | 0.584829 | 7:-47064025 | None:intergenic |
GTCGGCGCATCAGTTTCAGC+AGG | 0.589273 | 7:+47063373 | MsaT036906.1:CDS |
TGCAGCTGAGAATATGTGAA+AGG | 0.595086 | 7:-47063110 | None:intergenic |
TCAATTTCATCGTGGTGTGA+GGG | 0.596797 | 7:-47063833 | None:intergenic |
GCAAAGGAAGGATCTCATCT+CGG | 0.596929 | 7:+47064441 | MsaT036906.1:CDS |
AAAACCTACTCTTGTCGTCA+GGG | 0.598538 | 7:+47064302 | MsaT036906.1:CDS |
GGATAGGAGTTGTGATCGAA+CGG | 0.600755 | 7:+47064090 | MsaT036906.1:CDS |
CAAATCGAAGCACTAAAGGC+AGG | 0.602527 | 7:-47064033 | None:intergenic |
TTATGCAGGAGTTAGCACTA+AGG | 0.606201 | 7:+47063768 | MsaT036906.1:CDS |
AAAATGGGGAACCCTGGAAG+CGG | 0.610138 | 7:+47063335 | MsaT036906.1:CDS |
AAATTGTCGTAACATTGGAT+AGG | 0.615531 | 7:+47064074 | MsaT036906.1:CDS |
AGAACCCTGACGACAAGAGT+AGG | 0.620221 | 7:-47064306 | None:intergenic |
CAGGAGTTAGCACTAAGGAA+TGG | 0.623926 | 7:+47063773 | MsaT036906.1:CDS |
TCTTGACCCGAATCCAAGAA+GGG | 0.632079 | 7:-47063209 | None:intergenic |
ATCACCAAATTTCTCCTATG+GGG | 0.632427 | 7:+47063480 | MsaT036906.1:CDS |
ACGCGCAAGGGATATTGGCG+CGG | 0.634995 | 7:+47063453 | MsaT036906.1:CDS |
TGGTTCATAACAAACTGATG+AGG | 0.638887 | 7:-47063047 | None:intergenic |
GTAATCCGGAACACGCGCAA+GGG | 0.641709 | 7:+47063441 | MsaT036906.1:CDS |
ACTGCTTCGCAATCGCGTAG+TGG | 0.643756 | 7:-47063965 | None:intergenic |
AATGCAGTGATCTTGAGTGC+AGG | 0.644744 | 7:-47063803 | None:intergenic |
GTGAAGTTACTAAACGTCAA+CGG | 0.647933 | 7:-47064331 | None:intergenic |
GAGTTAGCACTAAGGAATGG+TGG | 0.649571 | 7:+47063776 | MsaT036906.1:CDS |
TGGCGCATAAGCAGAAAATG+GGG | 0.679052 | 7:+47063321 | MsaT036906.1:CDS |
GCTGCAGAACTTATAGACGC+CGG | 0.689078 | 7:+47063419 | MsaT036906.1:CDS |
TGTTTGTGTCAATGTCCACC+CGG | 0.690393 | 7:+47064183 | MsaT036906.1:CDS |
CCAGCTAAAAGACTCAATTG+TGG | 0.702219 | 7:+47063161 | MsaT036906.1:CDS |
TCATCTGAAGTACATCCGGG+TGG | 0.714970 | 7:-47064198 | None:intergenic |
AACTGAGCTCAATTTCATCG+TGG | 0.737179 | 7:-47063841 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 47062621 | 47064483 | 47062621 | ID=MsaG036906 |
Chr7 | mRNA | 47062621 | 47064483 | 47062621 | ID=MsaT036906.1;Parent=MsaG036906 |
Chr7 | exon | 47062621 | 47064483 | 47062621 | ID=MsaT036906.1.exon1;Parent=MsaT036906.1 |
Chr7 | CDS | 47062621 | 47064483 | 47062621 | ID=cds.MsaT036906.1;Parent=MsaT036906.1 |
Gene Sequence |
Protein sequence |