AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG036982


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036982 MtrunA17_Chr7g0232121 97.485 835 20 1 1 834 1 835 0.0 1677
MsaG036982 MtrunA17_Chr7g0231521 95.164 517 20 1 318 834 245 756 0.0 1012
MsaG036982 MtrunA17_Chr7g0231521 97.976 247 5 0 1 247 1 247 1.65e-168 508
MsaG036982 MtrunA17_Chr4g0066741 37.653 571 304 15 35 598 184 709 1.64e-113 371
MsaG036982 MtrunA17_Chr2g0286291 38.860 579 304 14 35 607 187 721 1.32e-111 366
MsaG036982 MtrunA17_Chr5g0394201 39.877 489 259 10 39 523 363 820 8.53e-108 356
MsaG036982 MtrunA17_Chr1g0205891 39.673 489 261 8 39 523 376 834 1.98e-106 352
MsaG036982 MtrunA17_Chr5g0442141 35.832 667 337 22 37 670 615 1223 8.64e-105 355
MsaG036982 MtrunA17_Chr3g0137091 35.811 592 317 11 37 608 287 835 5.23e-103 348
MsaG036982 MtrunA17_Chr3g0095091 37.544 562 304 12 37 579 569 1102 1.24e-101 346
MsaG036982 MtrunA17_Chr5g0403921 38.415 492 267 12 39 519 184 650 2.21e-99 326
MsaG036982 MtrunA17_Chr4g0052341 38.349 545 297 12 37 572 743 1257 1.22e-98 338
MsaG036982 MtrunA17_Chr4g0066651 39.038 520 258 15 39 535 989 1472 7.08e-90 312
MsaG036982 MtrunA17_Chr8g0348721 35.182 523 287 11 37 539 985 1475 7.70e-79 280
MsaG036982 MtrunA17_Chr7g0248031 33.843 523 295 12 37 539 992 1483 1.94e-76 272
MsaG036982 MtrunA17_Chr1g0163011 30.471 594 300 13 4 523 163 717 3.37e-69 243
MsaG036982 MtrunA17_Chr4g0017211 31.650 594 291 22 35 562 1446 1990 4.26e-62 229
MsaG036982 MtrunA17_Chr1g0183681 29.703 505 294 13 42 512 394 871 4.50e-57 213
MsaG036982 MtrunA17_Chr7g0257101 36.957 322 189 6 37 353 576 888 4.13e-54 204
MsaG036982 MtrunA17_Chr7g0257101 49.123 171 74 2 359 528 1187 1345 1.85e-39 158
MsaG036982 MtrunA17_Chr8g0384531 28.623 552 300 15 15 512 365 876 5.35e-51 194
MsaG036982 MtrunA17_Chr5g0393461 28.546 571 318 23 39 557 184 716 3.76e-46 178
MsaG036982 MtrunA17_Chr4g0040301 28.073 545 274 19 67 525 18 530 5.80e-44 170
MsaG036982 MtrunA17_Chr1g0175191 31.962 316 192 8 35 347 517 812 1.87e-41 165
MsaG036982 MtrunA17_Chr1g0175191 48.718 156 68 2 364 519 1062 1205 3.89e-36 148
MsaG036982 MtrunA17_Chr4g0069451 25.145 517 296 18 25 518 164 612 1.49e-22 103
MsaG036982 MtrunA17_Chr7g0232971 26.371 383 206 10 175 520 905 1248 2.39e-22 103
MsaG036982 MtrunA17_Chr2g0296421 22.954 562 344 23 39 550 511 1033 5.59e-18 89.4
MsaG036982 MtrunA17_Chr4g0047081 26.735 389 235 13 175 539 844 1206 7.22e-18 89.0
MsaG036982 MtrunA17_Chr7g0264371 25.519 482 286 17 60 523 302 728 2.00e-17 87.8
MsaG036982 MtrunA17_Chr2g0320751 33.129 163 94 2 363 522 849 999 3.18e-17 87.0
MsaG036982 MtrunA17_Chr2g0320751 25.000 284 170 9 79 344 467 725 2.35e-14 77.4
MsaG036982 MtrunA17_Chr7g0225791 22.460 561 318 18 38 520 715 1236 4.96e-17 86.3
MsaG036982 MtrunA17_Chr1g0168031 27.419 186 122 2 344 528 967 1140 1.99e-16 84.3
MsaG036982 MtrunA17_Chr1g0168031 21.779 326 188 10 61 344 536 836 9.69e-11 65.9
MsaG036982 MtrunA17_Chr1g0212331 32.414 145 86 1 383 527 888 1020 2.73e-16 84.0
MsaG036982 MtrunA17_Chr1g0212331 26.829 205 137 5 166 366 522 717 5.88e-13 73.2
MsaG036982 MtrunA17_Chr7g0255821 25.333 375 181 18 35 346 197 535 2.74e-16 83.6
MsaG036982 MtrunA17_Chr7g0255821 28.283 198 114 3 360 555 644 815 4.08e-15 79.7
MsaG036982 MtrunA17_Chr4g0024921 29.843 191 115 3 361 549 761 934 3.57e-16 83.6
MsaG036982 MtrunA17_Chr7g0233001 24.810 395 233 13 175 538 129 490 3.64e-16 82.4
MsaG036982 MtrunA17_Chr1g0190381 33.333 177 96 3 360 524 184 350 1.33e-15 80.9
MsaG036982 MtrunA17_Chr2g0281601 29.747 158 99 1 380 537 1148 1293 2.03e-15 81.3
MsaG036982 MtrunA17_Chr8g0352361 22.982 570 335 25 39 550 361 884 2.49e-15 80.5
MsaG036982 MtrunA17_Chr7g0233031 24.339 378 231 10 164 520 852 1195 5.38e-15 79.7
MsaG036982 MtrunA17_Chr7g0232991 30.303 165 100 2 383 543 480 633 4.46e-14 76.3
MsaG036982 MtrunA17_Chr4g0039561 33.945 109 69 2 313 419 34 141 1.28e-12 67.8
MsaG036982 MtrunA17_Chr3g0114161 22.303 547 324 19 60 534 696 1213 3.24e-12 70.9
MsaG036982 MtrunA17_Chr1g0191141 22.491 538 329 19 60 534 556 1068 3.60e-12 70.5
MsaG036982 MtrunA17_Chr1g0149871 40.476 84 48 1 37 120 242 323 1.34e-11 67.0
MsaG036982 MtrunA17_Chr3g0086111 25.874 286 166 12 17 286 167 422 1.42e-11 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG036982 AT2G44980.3 65.906 833 267 7 2 832 14 831 0.0 1115
MsaG036982 AT2G44980.2 65.588 834 269 8 2 832 14 832 0.0 1107
MsaG036982 AT2G44980.1 64.826 833 258 8 2 832 14 813 0.0 1092
MsaG036982 AT5G18620.1 42.181 486 244 9 35 519 190 639 3.32e-111 365
MsaG036982 AT5G18620.2 42.181 486 244 9 35 519 190 639 3.65e-111 365
MsaG036982 AT3G06400.2 42.181 486 244 11 35 519 185 634 9.39e-111 364
MsaG036982 AT3G06400.1 42.181 486 244 11 35 519 185 634 9.91e-111 364
MsaG036982 AT3G06400.3 42.181 486 244 11 35 519 185 634 1.12e-110 364
MsaG036982 AT5G19310.2 39.264 489 262 7 39 523 122 579 1.79e-107 349
MsaG036982 AT3G06010.1 39.059 489 264 8 39 523 403 861 2.78e-105 350
MsaG036982 AT5G19310.1 39.264 489 262 7 39 523 386 843 7.22e-105 348
MsaG036982 AT2G13370.1 35.447 615 334 16 35 632 621 1189 1.36e-100 344
MsaG036982 AT2G13370.2 35.447 615 334 16 35 632 621 1189 1.36e-100 344
MsaG036982 AT2G13370.3 35.447 615 334 16 35 632 621 1189 1.36e-100 344
MsaG036982 AT2G25170.1 36.842 532 282 10 35 544 269 768 4.52e-99 337
MsaG036982 AT2G25170.4 36.842 532 282 10 35 544 269 768 4.52e-99 337
MsaG036982 AT2G25170.2 36.842 532 282 10 35 544 286 785 7.40e-99 337
MsaG036982 AT2G25170.3 36.842 532 282 10 35 544 295 794 1.17e-98 336
MsaG036982 AT5G44800.1 41.035 541 273 15 42 569 692 1199 1.72e-97 335
MsaG036982 AT5G66750.1 38.900 509 253 14 39 525 202 674 4.55e-96 318
MsaG036982 AT4G31900.2 37.016 516 281 10 35 546 180 655 1.40e-94 322
MsaG036982 AT4G31900.3 37.016 516 281 10 35 546 221 696 2.75e-94 322
MsaG036982 AT4G31900.1 37.016 516 281 10 35 546 221 696 2.95e-94 322
MsaG036982 AT2G28290.2 39.558 498 254 12 35 517 750 1215 3.17e-91 317
MsaG036982 AT2G28290.5 38.846 520 267 14 35 535 751 1238 3.18e-91 317
MsaG036982 AT2G28290.3 39.558 498 254 12 35 517 750 1215 3.26e-91 317
MsaG036982 AT2G28290.4 39.558 498 254 12 35 517 750 1215 3.26e-91 317
MsaG036982 AT2G28290.6 39.558 498 254 12 35 517 751 1216 3.29e-91 317
MsaG036982 AT2G28290.1 38.846 520 267 14 35 535 750 1237 3.40e-91 317
MsaG036982 AT2G46020.2 35.619 525 283 13 37 539 979 1470 3.89e-77 275
MsaG036982 AT2G46020.3 35.619 525 283 13 37 539 979 1470 3.89e-77 275
MsaG036982 AT2G46020.4 35.619 525 283 13 37 539 979 1470 3.89e-77 275
MsaG036982 AT2G46020.5 35.429 525 283 12 37 539 979 1469 6.65e-77 274
MsaG036982 AT2G46020.1 35.429 525 283 12 37 539 979 1469 6.65e-77 274
MsaG036982 AT2G46020.6 35.429 525 283 12 37 539 979 1469 6.65e-77 274
MsaG036982 AT2G02090.1 31.156 597 308 15 25 550 199 763 4.06e-70 247
MsaG036982 AT3G54280.1 31.716 577 284 22 35 544 1447 1980 4.12e-62 229
MsaG036982 AT3G54280.2 31.325 581 281 21 35 544 1478 2011 4.21e-62 229
MsaG036982 AT2G18760.4 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.1 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.2 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.7 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.5 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.6 30.452 509 283 14 42 512 388 863 4.19e-59 219
MsaG036982 AT2G18760.3 30.452 509 283 14 42 512 447 922 5.48e-59 219
MsaG036982 AT3G57300.1 35.989 364 204 8 35 378 582 936 1.08e-56 213
MsaG036982 AT3G57300.1 45.550 191 88 2 359 549 1201 1375 2.72e-39 158
MsaG036982 AT3G57300.4 35.989 364 204 8 35 378 582 936 1.08e-56 213
MsaG036982 AT3G57300.4 45.550 191 88 2 359 549 1201 1375 2.72e-39 158
MsaG036982 AT3G57300.3 35.989 364 204 8 35 378 582 936 2.42e-56 211
MsaG036982 AT3G57300.2 33.842 393 206 9 35 378 582 969 8.75e-54 204
MsaG036982 AT3G57300.2 45.550 191 88 2 359 549 1234 1408 2.81e-39 158
MsaG036982 AT5G63950.1 29.323 532 286 15 35 512 373 868 1.83e-52 199
MsaG036982 AT5G63950.2 29.038 520 286 14 35 512 373 851 3.06e-50 192
MsaG036982 AT3G19210.3 26.930 557 331 19 39 548 180 707 2.33e-43 169
MsaG036982 AT3G19210.1 26.930 557 331 19 39 548 180 707 4.32e-43 169
MsaG036982 AT3G19210.2 26.978 556 330 19 39 548 180 705 7.13e-43 169
MsaG036982 AT3G12810.1 32.278 316 191 8 35 347 532 827 1.05e-41 166
MsaG036982 AT3G12810.1 36.122 263 137 6 279 529 979 1222 2.48e-35 146
MsaG036982 AT3G12810.2 32.278 316 191 8 35 347 528 823 1.06e-41 166
MsaG036982 AT3G12810.2 36.122 263 137 6 279 529 975 1218 2.56e-35 146
MsaG036982 AT1G03750.1 29.667 300 176 7 35 318 135 415 1.03e-28 124
MsaG036982 AT1G03750.1 36.646 161 90 1 360 520 524 672 1.57e-23 107
MsaG036982 AT1G48310.1 24.898 490 313 11 35 517 168 609 2.42e-23 106
MsaG036982 AT1G48310.2 24.898 490 313 11 35 517 173 614 3.18e-23 105
MsaG036982 AT1G48310.3 24.554 505 296 12 35 517 168 609 5.04e-23 105
MsaG036982 AT5G22750.1 33.758 157 92 1 363 519 862 1006 9.91e-19 92.4
MsaG036982 AT5G22750.1 25.725 276 164 9 86 344 487 738 1.04e-16 85.9
MsaG036982 AT5G43530.1 31.677 161 96 2 361 519 1106 1254 1.88e-17 88.2
MsaG036982 AT2G21450.2 23.105 541 321 16 39 520 272 776 2.02e-16 84.7
MsaG036982 AT2G21450.1 23.105 541 321 16 39 520 265 769 3.11e-16 84.0
MsaG036982 AT1G11100.1 22.500 400 220 14 2 342 514 882 3.12e-16 84.3
MsaG036982 AT1G11100.1 31.646 158 96 2 380 537 1071 1216 2.07e-15 81.6
MsaG036982 AT1G11100.5 22.500 400 220 14 2 342 371 739 3.65e-16 84.0
MsaG036982 AT1G11100.5 31.646 158 96 2 380 537 928 1073 1.82e-15 81.6
MsaG036982 AT2G21450.3 23.105 541 321 16 39 520 174 678 3.98e-16 83.6
MsaG036982 AT1G02670.6 32.335 167 97 2 383 549 513 663 7.27e-16 82.4
MsaG036982 AT1G02670.3 32.335 167 97 2 383 549 540 690 8.19e-16 82.4
MsaG036982 AT1G02670.7 32.727 165 95 2 384 548 518 666 1.09e-15 82.0
MsaG036982 AT1G02670.1 32.727 165 95 2 384 548 529 677 1.24e-15 81.6
MsaG036982 AT1G11100.2 31.646 158 96 2 380 537 1114 1259 2.02e-15 81.6
MsaG036982 AT1G11100.4 31.646 158 96 2 380 537 1115 1260 2.03e-15 81.6
MsaG036982 AT1G11100.3 31.646 158 96 2 380 537 972 1117 2.10e-15 81.6
MsaG036982 AT5G05130.1 30.657 137 85 1 384 520 729 855 2.44e-15 81.3
MsaG036982 AT5G05130.1 23.058 399 193 13 35 346 227 598 2.59e-14 77.8
MsaG036982 AT1G08600.1 31.792 173 96 2 363 523 1093 1255 5.18e-15 80.5
MsaG036982 AT1G08600.4 31.792 173 96 2 363 523 1114 1276 6.06e-15 80.1
MsaG036982 AT1G08600.3 31.792 173 96 2 363 523 1114 1276 6.06e-15 80.1
MsaG036982 AT1G08600.2 31.792 173 96 2 363 523 1114 1276 6.06e-15 80.1
MsaG036982 AT3G16600.1 23.496 349 185 11 39 347 53 359 7.51e-15 79.3
MsaG036982 AT3G16600.1 41.250 80 47 0 447 526 510 589 5.23e-11 67.0
MsaG036982 AT1G50410.2 31.724 145 87 1 383 527 829 961 8.07e-15 79.7
MsaG036982 AT1G50410.2 26.203 187 127 4 162 344 462 641 1.67e-11 68.9
MsaG036982 AT1G50410.1 31.724 145 87 1 383 527 829 961 8.07e-15 79.7
MsaG036982 AT1G50410.1 26.203 187 127 4 162 344 462 641 1.67e-11 68.9
MsaG036982 AT1G50410.3 31.724 145 87 1 383 527 829 961 8.07e-15 79.7
MsaG036982 AT1G50410.3 26.203 187 127 4 162 344 462 641 1.67e-11 68.9
MsaG036982 AT1G61140.1 30.405 148 91 1 380 527 1123 1258 9.18e-15 79.3
MsaG036982 AT1G61140.3 30.405 148 91 1 380 527 965 1100 1.01e-14 79.3
MsaG036982 AT3G20010.3 31.250 144 87 1 383 526 629 760 2.18e-14 77.8
MsaG036982 AT1G05120.2 32.911 158 92 2 361 516 702 847 2.49e-14 77.8
MsaG036982 AT3G20010.2 31.250 144 87 1 383 526 604 735 2.55e-14 77.8
MsaG036982 AT1G05120.1 32.911 158 92 2 361 516 659 804 2.61e-14 77.8
MsaG036982 AT3G20010.1 31.250 144 87 1 383 526 895 1026 2.90e-14 77.8
MsaG036982 AT3G20010.5 31.250 144 87 1 383 526 895 1026 2.90e-14 77.8
MsaG036982 AT3G20010.7 31.250 144 87 1 383 526 895 1026 2.90e-14 77.8
MsaG036982 AT3G42670.4 24.319 551 306 23 55 531 706 1219 7.41e-12 70.1
MsaG036982 AT3G42670.2 24.319 551 306 23 55 531 704 1217 7.60e-12 70.1
MsaG036982 AT3G42670.3 24.319 551 306 23 55 531 704 1217 7.60e-12 70.1
MsaG036982 AT3G42670.1 24.319 551 306 23 55 531 704 1217 7.60e-12 70.1

Find 174 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGTCTCTGTTCGTATTTC+AGG 0.133833 7:-49053230 None:intergenic
CAACCATCTGTCACACTTAA+AGG 0.175578 7:-49055250 None:intergenic
CTGAACCTGCTTTAATATTC+AGG 0.190318 7:+49059265 MsaT036982.1:CDS
CACAGCTAAAGCAACCATTT+TGG 0.262206 7:-49060191 None:intergenic
TATTATCGCCTGTAACATTT+AGG 0.284018 7:-49058663 None:intergenic
CTCGGCGTCAACGTTGTTCT+TGG 0.284517 7:+49053390 MsaT036982.1:CDS
ATTTAAAGACTTCTAGTTTA+GGG 0.285069 7:-49055297 None:intergenic
TATTCTAATATAGGATTATC+TGG 0.286984 7:+49058104 MsaT036982.1:intron
GGATGGTAATTCTCCCAAAA+TGG 0.295315 7:+49060177 MsaT036982.1:CDS
TCCCCATCTGGTGGGCTAAT+AGG 0.296180 7:-49059171 None:intergenic
TGACGGTAACGATCAAAATT+TGG 0.299081 7:+49060156 MsaT036982.1:CDS
CCCCATCTGGTGGGCTAATA+GGG 0.300486 7:-49059170 None:intergenic
CTGTTCGTATTTCAGGTTCA+TGG 0.301520 7:-49053223 None:intergenic
TGTTGACACCTCCGGACGTT+GGG 0.305326 7:+49059832 MsaT036982.1:CDS
CCAGTCATCAACAACCTTCT+TGG 0.310996 7:-49055940 None:intergenic
TATTTAAAGACTTCTAGTTT+AGG 0.311050 7:-49055298 None:intergenic
TTCTCAGCCGCTCAAAATTC+TGG 0.320358 7:+49060298 MsaT036982.1:CDS
ACGAACTAAATCAAAGCTTA+TGG 0.321042 7:+49056995 MsaT036982.1:CDS
CAGCTGAGCCTAAATGTTAC+AGG 0.336533 7:+49058655 MsaT036982.1:CDS
TTTCCATCATTGATTTCATT+GGG 0.340336 7:-49058769 None:intergenic
TATTCTTACGAGCGTCTTGA+TGG 0.349597 7:+49058138 MsaT036982.1:CDS
AACAAACTCACATTATTTGT+TGG 0.356468 7:-49055385 None:intergenic
ATGGAATTTCATGGCTTATA+AGG 0.356818 7:+49053358 MsaT036982.1:CDS
AAGCTAGTCGCACTATCTTC+TGG 0.357855 7:+49057248 MsaT036982.1:CDS
TCACCTTCTTCATAAGGTTC+AGG 0.364615 7:-49057432 None:intergenic
TCAGTTCCTTTCTACATTCA+AGG 0.364651 7:+49056041 MsaT036982.1:CDS
CCTTTACCTTTGGAGAATCA+TGG 0.365525 7:-49056929 None:intergenic
TTGGTGATCTCCATCTTATA+AGG 0.367111 7:+49059945 MsaT036982.1:CDS
CAGCAACTCATCAGCTAATA+CGG 0.367319 7:+49058203 MsaT036982.1:CDS
AACAGAACCAGCATCTAATA+TGG 0.368832 7:-49059196 None:intergenic
GACTTTACGCCTTGGATTGT+AGG 0.372160 7:-49060221 None:intergenic
TTTAAAAGGATTTGATGTTA+AGG 0.376079 7:+49058909 MsaT036982.1:CDS
TTATATTCTACGAGCAAGAT+TGG 0.388466 7:+49058416 MsaT036982.1:CDS
ATGAGGCATCATATCTTGCT+TGG 0.388932 7:+49058971 MsaT036982.1:CDS
GATTTGAAATCCATCATAGT+TGG 0.389848 7:+49058730 MsaT036982.1:CDS
TTCACTCGGCGCGGCGTCGC+CGG 0.392717 7:-49053292 None:intergenic
TGAAGTCTCTCCTTTACCTT+TGG 0.393861 7:-49056939 None:intergenic
GAACATGGGGATTTGCATCT+TGG 0.395023 7:+49059926 MsaT036982.1:CDS
TGAACTATCCCTCTTGTGTC+TGG 0.399734 7:-49061027 None:intergenic
TCCACCATGGCCCCAACGTC+CGG 0.401264 7:-49059843 None:intergenic
TCAGAAAGGTTGTTCTGAAT+AGG 0.406467 7:-49055967 None:intergenic
TGATGAACAAATATTTGATA+AGG 0.406882 7:+49058852 MsaT036982.1:CDS
AGATGTTCACCTTCTTCATA+AGG 0.412101 7:-49057438 None:intergenic
ACCTCCGGACGTTGGGGCCA+TGG 0.416461 7:+49059839 MsaT036982.1:CDS
GCGTCTTGATGGATCAATTA+GGG 0.416562 7:+49058149 MsaT036982.1:CDS
AGCGTCTTGATGGATCAATT+AGG 0.416855 7:+49058148 MsaT036982.1:CDS
CAGATGAAGGAACGTTTGTC+GGG 0.417172 7:-49059245 None:intergenic
TTGCAGAGAGCACATAGAAT+TGG 0.420046 7:+49058463 MsaT036982.1:CDS
TCTAATATGGTATCCCCATC+TGG 0.420350 7:-49059183 None:intergenic
TAACAGTATTCTGTAGTGAT+TGG 0.424958 7:-49057283 None:intergenic
CTTCGAAAGCTACATCATAA+TGG 0.428087 7:+49057958 MsaT036982.1:CDS
ATCAAGTCGATGGAATTTCA+TGG 0.435632 7:+49053349 MsaT036982.1:CDS
GATGTAGCTTTCGAAGAAGT+TGG 0.436540 7:-49057951 None:intergenic
CTAGAAGTCTTTAAATATGT+TGG 0.437093 7:+49055304 MsaT036982.1:CDS
GAAGATAGTGCGACTAGCTT+CGG 0.437310 7:-49057245 None:intergenic
CAATTATCTTCAGTTGGAAC+TGG 0.443657 7:+49058706 MsaT036982.1:CDS
TACACAAAACATGATTCATC+TGG 0.450239 7:-49058486 None:intergenic
CTCCATCTTATAAGGCTTGA+AGG 0.450369 7:+49059953 MsaT036982.1:CDS
AGAAGGTGAACATCTGGTTC+AGG 0.450443 7:+49057446 MsaT036982.1:CDS
TCAGATGAAGGAACGTTTGT+CGG 0.451592 7:-49059246 None:intergenic
TGAGGCATCATATCTTGCTT+GGG 0.455241 7:+49058972 MsaT036982.1:CDS
TGACATTGCACTGATGGATA+AGG 0.455695 7:+49055531 MsaT036982.1:CDS
TTATGAAGAAGGTGAACATC+TGG 0.457904 7:+49057440 MsaT036982.1:CDS
AAAGTGCGCCAGTTGTCTCA+TGG 0.458523 7:+49055107 MsaT036982.1:CDS
GGATTTGATGTTAAGGAAAG+AGG 0.458776 7:+49058916 MsaT036982.1:CDS
CTCGACGACGACGAAAGTTC+CGG 0.458951 7:+49053273 MsaT036982.1:CDS
TGGATTCTTAACGTTATCTT+CGG 0.459762 7:-49060996 None:intergenic
CGCCGAGTGAAGAAGAGCTT+GGG 0.459797 7:+49053304 MsaT036982.1:CDS
ATCCCAAGCTCTTCTTCACT+CGG 0.462382 7:-49053306 None:intergenic
ATCATATGACATTGCACTGA+TGG 0.464945 7:+49055525 MsaT036982.1:CDS
TCCATTATTTGCAGGGGATG+AGG 0.466237 7:+49054450 MsaT036982.1:intron
AAATATCGACAGATGGGATT+GGG 0.468473 7:+49055047 MsaT036982.1:intron
ACTTCAAATCCTAAGTGTAT+TGG 0.469589 7:+49056956 MsaT036982.1:CDS
CATACGTAATCCAACTATGA+TGG 0.470396 7:-49058740 None:intergenic
CACCTTCAAGCCTTATAAGA+TGG 0.473265 7:-49059955 None:intergenic
CTGTCTAAGTGGAATGCTGC+TGG 0.477019 7:+49059123 MsaT036982.1:CDS
CATCAGTGATGCATATGAAC+GGG 0.478023 7:+49059898 MsaT036982.1:CDS
TCTTGTGTCTGGAAACAGCT+TGG 0.479100 7:-49061016 None:intergenic
TAAATATCGACAGATGGGAT+TGG 0.481685 7:+49055046 MsaT036982.1:intron
ATGTTGGTGATAAAGAATAT+AGG 0.483159 7:+49055320 MsaT036982.1:CDS
TTTAAGTGTGACAGATGGTT+GGG 0.486602 7:+49055252 MsaT036982.1:CDS
TACAGCTGTGTTGACACCTC+CGG 0.488968 7:+49059824 MsaT036982.1:intron
GATAAACAATTATCTTCAGT+TGG 0.489320 7:+49058700 MsaT036982.1:CDS
CCATGATTCTCCAAAGGTAA+AGG 0.501914 7:+49056929 MsaT036982.1:CDS
TTTATGATCTCAACAAGAGC+CGG 0.502777 7:+49058264 MsaT036982.1:CDS
GATCCCAATGAAATCAATGA+TGG 0.504075 7:+49058766 MsaT036982.1:CDS
TAAGGTTCAGGTTCAATGCC+CGG 0.507507 7:-49057420 None:intergenic
ATTAAAGCAGGTTCAGATGA+AGG 0.508911 7:-49059258 None:intergenic
CAAAATGGTTGCTTTAGCTG+TGG 0.510756 7:+49060192 MsaT036982.1:CDS
TAAGGATGACAGGAAATTTG+AGG 0.518648 7:+49058870 MsaT036982.1:CDS
TATGAACGGGCTTCTGAACA+TGG 0.519042 7:+49059911 MsaT036982.1:CDS
CTTTAAGTGTGACAGATGGT+TGG 0.521360 7:+49055251 MsaT036982.1:CDS
TGAAATCTCACTTATCGACT+TGG 0.521567 7:+49060252 MsaT036982.1:CDS
TTTAACAGAAATTAATGCAA+TGG 0.523825 7:+49058807 MsaT036982.1:CDS
AGCAACTCATCAGCTAATAC+GGG 0.525106 7:+49058204 MsaT036982.1:CDS
CTTCGAGGGACTTTACGCCT+TGG 0.526326 7:-49060229 None:intergenic
AAAATGGCCCATGAGACAAC+TGG 0.530577 7:-49055115 None:intergenic
TTATGATCTCAACAAGAGCC+GGG 0.532523 7:+49058265 MsaT036982.1:CDS
GTTAACCTGAATATTAAAGC+AGG 0.533968 7:-49059270 None:intergenic
AAGTGCGCCAGTTGTCTCAT+GGG 0.534518 7:+49055108 MsaT036982.1:CDS
GAACCTGAACCTTATGAAGA+AGG 0.535390 7:+49057429 MsaT036982.1:CDS
GAACAACCTTTCTGAACTGT+GGG 0.536265 7:+49055975 MsaT036982.1:CDS
AAGCAGAAGGAACTCGGATG+AGG 0.537584 7:+49059050 MsaT036982.1:CDS
GAGATTCAAGCCAACTCCCC+CGG 0.539186 7:-49058283 None:intergenic
GCGCCGAGTGAAGAAGAGCT+TGG 0.542439 7:+49053303 MsaT036982.1:CDS
GTGTTGACACCTCCGGACGT+TGG 0.543863 7:+49059831 MsaT036982.1:CDS
GAAATTCCATCGACTTGATG+AGG 0.544254 7:-49053345 None:intergenic
CGATGTCCTTGAATGTAGAA+AGG 0.544727 7:-49056047 None:intergenic
CTTGAAAAGCAGAAGGAACT+CGG 0.545155 7:+49059044 MsaT036982.1:CDS
AAGAAAAGAAGCTGTCTAAG+TGG 0.545430 7:+49059112 MsaT036982.1:CDS
TAAGTGAGATTTCACTTCGA+GGG 0.545616 7:-49060243 None:intergenic
CCCTATTAGCCCACCAGATG+GGG 0.547104 7:+49059170 MsaT036982.1:CDS
ACTTGAGACTGCAAGGAAGA+AGG 0.547739 7:+49059086 MsaT036982.1:CDS
CGAGCAAGATTGGAACCCTC+AGG 0.551925 7:+49058426 MsaT036982.1:CDS
TTGTGATCTTGATCTTGATG+AGG 0.552881 7:+49058954 MsaT036982.1:CDS
AAATATTTGATAAGGATGAC+AGG 0.553111 7:+49058860 MsaT036982.1:CDS
GACATCGGTGATCTTACCTC+AGG 0.555353 7:+49056063 MsaT036982.1:CDS
AAAGCTTGTCTGTCCACCTG+AGG 0.557008 7:-49058442 None:intergenic
AAGCTTGTCTGTCCACCTGA+GGG 0.559626 7:-49058441 None:intergenic
AGAACAACCTTTCTGAACTG+TGG 0.559753 7:+49055974 MsaT036982.1:CDS
ACCCTATTAGCCCACCAGAT+GGG 0.559798 7:+49059169 MsaT036982.1:CDS
CAACTGTATGTTCAGTAACA+AGG 0.561415 7:-49058513 None:intergenic
ATCGCTATATCATGCCAAGA+AGG 0.562963 7:+49055926 MsaT036982.1:CDS
GGGGATACCATATTAGATGC+TGG 0.563442 7:+49059189 MsaT036982.1:CDS
TGGTTCAATCCTACAATCCA+AGG 0.568037 7:+49060212 MsaT036982.1:CDS
TGATGGATCAATTAGGGCTG+AGG 0.570750 7:+49058155 MsaT036982.1:CDS
TTTAAAGACTTCTAGTTTAG+GGG 0.573448 7:-49055296 None:intergenic
CTACATGTCAATACTGAGGA+AGG 0.576449 7:+49057217 MsaT036982.1:CDS
CTTTCTACATTCAAGGACAT+CGG 0.576597 7:+49056048 MsaT036982.1:CDS
CAGCACATCGAAAGGTAACA+TGG 0.577568 7:-49055497 None:intergenic
AAATCAAAGCTTATGGAGTG+TGG 0.577677 7:+49057002 MsaT036982.1:CDS
CCAAGAAGGTTGTTGATGAC+TGG 0.580680 7:+49055940 MsaT036982.1:CDS
GACCCTATTAGCCCACCAGA+TGG 0.580730 7:+49059168 MsaT036982.1:CDS
AAGAATCAGTAGTTTACCAC+TGG 0.580974 7:-49057926 None:intergenic
TAAACGCAGCCAATACACTT+AGG 0.581206 7:-49056965 None:intergenic
CTGAAACCTCATCAAGTCGA+TGG 0.585245 7:+49053339 MsaT036982.1:CDS
ATGAACGGGCTTCTGAACAT+GGG 0.588636 7:+49059912 MsaT036982.1:CDS
TGTTACAGGCGATAATATTG+TGG 0.589877 7:+49058669 MsaT036982.1:CDS
TAAGCTTTGATTTAGTTCGT+CGG 0.595261 7:-49056992 None:intergenic
TCCGGACGTTGGGGCCATGG+TGG 0.598362 7:+49059842 MsaT036982.1:CDS
GATGTTAACAGCACATCGAA+AGG 0.602602 7:-49055505 None:intergenic
GGTAACGATCAAAATTTGGA+TGG 0.603852 7:+49060160 MsaT036982.1:CDS
GTTGACACCTCCGGACGTTG+GGG 0.604376 7:+49059833 MsaT036982.1:CDS
AGCTGTTTCCAGACACAAGA+GGG 0.607304 7:+49061019 MsaT036982.1:CDS
GGGAGTTGGCTTGAATCTCG+TGG 0.608557 7:+49058287 MsaT036982.1:CDS
TCAATGCCCACAGTTCAGAA+AGG 0.608832 7:-49055981 None:intergenic
GGTCTTCAACATTCAACGAA+TGG 0.611461 7:-49059149 None:intergenic
ATAAGTGAGATTTCACTTCG+AGG 0.613030 7:-49060244 None:intergenic
GCATCAGTGATGCATATGAA+CGG 0.614567 7:+49059897 MsaT036982.1:CDS
CTTGGAAAGATGCTTATCAA+AGG 0.617649 7:+49060270 MsaT036982.1:CDS
AATATGGTATCCCCATCTGG+TGG 0.617880 7:-49059180 None:intergenic
AACAGTCCATGATTCTCCAA+AGG 0.620226 7:+49056923 MsaT036982.1:intron
TCGATGATTGCATACTGCCA+TGG 0.620230 7:-49055571 None:intergenic
ACCATGGCCCCAACGTCCGG+AGG 0.624200 7:-49059840 None:intergenic
TTATTGACTTGAAAAGCAGA+AGG 0.629704 7:+49059037 MsaT036982.1:CDS
TACACAGTTGTCTCAGTGAG+AGG 0.631133 7:-49057041 None:intergenic
TGATGGAAAAGACAAGGACA+TGG 0.635271 7:+49058783 MsaT036982.1:CDS
ATATGGTATCCCCATCTGGT+GGG 0.635579 7:-49059179 None:intergenic
TATGATCTCAACAAGAGCCG+GGG 0.646522 7:+49058266 MsaT036982.1:CDS
GCAAGATTGGAACCCTCAGG+TGG 0.652325 7:+49058429 MsaT036982.1:CDS
CAATCATCGATGAAGCCCAA+AGG 0.653603 7:+49055584 MsaT036982.1:CDS
CTTATAAGGAGATATAAACT+CGG 0.658097 7:+49053372 MsaT036982.1:CDS
ATGATCTCAACAAGAGCCGG+GGG 0.659907 7:+49058267 MsaT036982.1:CDS
TGTTACTGAACATACAGTTG+AGG 0.663217 7:+49058516 MsaT036982.1:CDS
AGATGAAGGAACGTTTGTCG+GGG 0.663413 7:-49059244 None:intergenic
TGAACGGGCTTCTGAACATG+GGG 0.666023 7:+49059913 MsaT036982.1:CDS
ACAGTTGTCTCAGTGAGAGG+TGG 0.681746 7:-49057038 None:intergenic
AATCAATGATGGAAAAGACA+AGG 0.683808 7:+49058777 MsaT036982.1:CDS
AGGTCTACATGTCAATACTG+AGG 0.686431 7:+49057213 MsaT036982.1:CDS
TGTCCTTTAAGTGTGACAGA+TGG 0.688144 7:+49055247 MsaT036982.1:CDS
AAGCTGTTTCCAGACACAAG+AGG 0.691716 7:+49061018 MsaT036982.1:CDS
TTACACCGTAGGTAATTATG+CGG 0.708955 7:+49058614 MsaT036982.1:intron
GTGCATCAAACATTCCACCA+TGG 0.718065 7:-49059856 None:intergenic
AAGCTCTTCTTCACTCGGCG+CGG 0.721796 7:-49053301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 49053225 49061045 49053225 ID=MsaG036982
Chr7 mRNA 49053225 49061045 49053225 ID=MsaT036982.1;Parent=MsaG036982
Chr7 exon 49053225 49053411 49053225 ID=MsaT036982.1.exon1;Parent=MsaT036982.1
Chr7 CDS 49053225 49053411 49053225 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49054464 49054471 49054464 ID=MsaT036982.1.exon2;Parent=MsaT036982.1
Chr7 CDS 49054464 49054471 49054464 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49055059 49055137 49055059 ID=MsaT036982.1.exon3;Parent=MsaT036982.1
Chr7 CDS 49055059 49055137 49055059 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49055239 49055396 49055239 ID=MsaT036982.1.exon4;Parent=MsaT036982.1
Chr7 CDS 49055239 49055396 49055239 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49055496 49055624 49055496 ID=MsaT036982.1.exon5;Parent=MsaT036982.1
Chr7 CDS 49055496 49055624 49055496 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49055904 49056084 49055904 ID=MsaT036982.1.exon6;Parent=MsaT036982.1
Chr7 CDS 49055904 49056084 49055904 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49056928 49057060 49056928 ID=MsaT036982.1.exon7;Parent=MsaT036982.1
Chr7 CDS 49056928 49057060 49056928 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49057184 49057301 49057184 ID=MsaT036982.1.exon8;Parent=MsaT036982.1
Chr7 CDS 49057184 49057301 49057184 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49057378 49057467 49057378 ID=MsaT036982.1.exon9;Parent=MsaT036982.1
Chr7 CDS 49057378 49057467 49057378 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49057925 49058032 49057925 ID=MsaT036982.1.exon10;Parent=MsaT036982.1
Chr7 CDS 49057925 49058032 49057925 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49058117 49058320 49058117 ID=MsaT036982.1.exon11;Parent=MsaT036982.1
Chr7 CDS 49058117 49058320 49058117 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49058415 49058540 49058415 ID=MsaT036982.1.exon12;Parent=MsaT036982.1
Chr7 CDS 49058415 49058540 49058415 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49058625 49059286 49058625 ID=MsaT036982.1.exon13;Parent=MsaT036982.1
Chr7 CDS 49058625 49059286 49058625 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49059829 49059974 49059829 ID=MsaT036982.1.exon14;Parent=MsaT036982.1
Chr7 CDS 49059829 49059974 49059829 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49060155 49060319 49060155 ID=MsaT036982.1.exon15;Parent=MsaT036982.1
Chr7 CDS 49060155 49060319 49060155 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Chr7 exon 49060987 49061045 49060987 ID=MsaT036982.1.exon16;Parent=MsaT036982.1
Chr7 CDS 49060987 49061045 49060987 ID=cds.MsaT036982.1;Parent=MsaT036982.1
Gene Sequence

>MsaT036982.1

ATGAACCTGAAATACGAACAGAGACTCCAAGTCGCCGCTAAAATAATACTCGACGACGACGAAAGTTCCGGCGACGCCGCGCCGAGTGAAGAAGAGCTTGGGATTAAAGCAACACTGAAACCTCATCAAGTCGATGGAATTTCATGGCTTATAAGGAGATATAAACTCGGCGTCAACGTTGTTCTTGGGGATGAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCTCATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACAAATAATGCCATGTTACCTTTCGATGTGCTGTTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTCAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGAAGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGCATTTTTGTATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGACATCGGTGATCTTACCTCAGTCCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTAAGTGTATTGGCTGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCACTTGTTAGCCTGCAAAAAAAGGTCTACATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATACAACTAAGGAAAGCATGCAGCCATCCTTATCTTTTTCCGGGCATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTGATTCTTGACCAACTTCTTCGAAAGCTACATCATAATGGACATCATGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAACGGAGCTTTTGTTTTTATGATCTCAACAAGAGCCGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTTGAGGAAGTAATTATGCGGAGAGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGCGATAATATTGTGGAAAATGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTGAAATCCATCATAGTTGGATTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGACAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGAGGTTCTGCTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTCGGATGAGGAAAAGAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGCTGGATACCATTCGTTGAATGTTGAAGACCCTATTAGCCCACCAGATGGGGATACCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACATCCCCGACAAACGTTCCTTCATCTGAACCTGCTTTAATATTCAGCTGTGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTCTGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGACGGTAACGATCAAAATTTGGATGGTAATTCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTATCGACTTGGAAAGATGCTTATCAAAGGCAGCGTTCTCAGCCGCTCAAAATTCTGGTATTATTACCGAAGATAACGTTAAGAATCCAAGCTGTTTCCAGACACAAGAGGGATAG

Protein sequence

>MsaT036982.1

MNLKYEQRLQVAAKIILDDDESSGDAAPSEEELGIKATLKPHQVDGISWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTNNAMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDIGDLTSVHDSPKVKERLQILSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHHVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVENEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGFDVKERGSASFSCDLDLDEASYLAWVKKFEEVSKSSCDSVIDLKSRRNSDEEKSQKLETARKKAEEKKLSKWNAAGYHSLNVEDPISPPDGDTILDAGSVHFVYGDCTSPTNVPSSEPALIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERASEHGDLHLGDLHLIRLEDDGNDQNLDGNSPKMVALAVVQSYNPRRKVPRSEISLIDLERCLSKAAFSAAQNSGIITEDNVKNPSCFQTQEG*