Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037027 | XP_013448347.2 | 90.079 | 504 | 47 | 1 | 2 | 505 | 39 | 539 | 0.0 | 934 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037027 | sp|O82175|SUVH5_ARATH | 40.351 | 570 | 223 | 14 | 7 | 505 | 271 | 794 | 6.77e-114 | 357 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037027 | tr|A0A396H1J2|A0A396H1J2_MEDTR | 90.079 | 504 | 47 | 1 | 2 | 505 | 39 | 539 | 0.0 | 934 |
Gene ID | Type | Classification |
---|---|---|
MsaG037027 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037027 | MtrunA17_Chr7g0232811 | 90.079 | 504 | 47 | 1 | 2 | 505 | 39 | 539 | 0.0 | 934 |
MsaG037027 | MtrunA17_Chr7g0232841 | 86.535 | 505 | 52 | 4 | 2 | 505 | 39 | 528 | 0.0 | 856 |
MsaG037027 | MtrunA17_Chr7g0232981 | 79.604 | 505 | 75 | 5 | 2 | 505 | 39 | 516 | 0.0 | 781 |
MsaG037027 | MtrunA17_Chr5g0399801 | 44.216 | 536 | 207 | 12 | 40 | 505 | 576 | 1089 | 1.06e-128 | 400 |
MsaG037027 | MtrunA17_Chr4g0003511 | 41.917 | 532 | 222 | 10 | 41 | 505 | 541 | 1052 | 2.12e-122 | 383 |
MsaG037027 | MtrunA17_Chr7g0232861 | 85.238 | 210 | 29 | 1 | 2 | 211 | 35 | 242 | 2.53e-121 | 355 |
MsaG037027 | MtrunA17_Chr4g0003501 | 41.682 | 535 | 219 | 11 | 40 | 505 | 445 | 955 | 2.02e-119 | 373 |
MsaG037027 | MtrunA17_Chr7g0232761 | 71.369 | 241 | 48 | 3 | 2 | 226 | 39 | 274 | 2.37e-103 | 310 |
MsaG037027 | MtrunA17_Chr7g0232751 | 93.277 | 119 | 8 | 0 | 387 | 505 | 1 | 119 | 1.20e-75 | 233 |
MsaG037027 | MtrunA17_Chr1g0170651 | 32.240 | 549 | 237 | 14 | 44 | 505 | 46 | 546 | 2.54e-72 | 239 |
MsaG037027 | MtrunA17_Chr7g0232871 | 91.818 | 110 | 9 | 0 | 296 | 405 | 1 | 110 | 9.69e-66 | 207 |
MsaG037027 | MtrunA17_Chr3g0080761 | 31.079 | 547 | 266 | 18 | 41 | 500 | 137 | 659 | 1.31e-65 | 224 |
MsaG037027 | MtrunA17_Chr7g0252211 | 31.311 | 511 | 254 | 13 | 75 | 505 | 264 | 757 | 4.80e-65 | 224 |
MsaG037027 | MtrunA17_Chr6g0476111 | 31.176 | 510 | 255 | 14 | 75 | 505 | 202 | 694 | 5.55e-62 | 215 |
MsaG037027 | MtrunA17_Chr8g0368911 | 32.421 | 475 | 229 | 16 | 73 | 474 | 293 | 748 | 9.29e-62 | 216 |
MsaG037027 | MtrunA17_Chr6g0476121 | 31.445 | 512 | 256 | 14 | 73 | 505 | 148 | 643 | 3.02e-61 | 212 |
MsaG037027 | MtrunA17_Chr8g0354821 | 30.153 | 587 | 294 | 22 | 6 | 500 | 121 | 683 | 5.29e-61 | 212 |
MsaG037027 | MtrunA17_Chr8g0368901 | 32.135 | 473 | 223 | 16 | 78 | 474 | 305 | 755 | 1.36e-59 | 209 |
MsaG037027 | MtrunA17_Chr7g0255181 | 30.540 | 537 | 259 | 19 | 42 | 500 | 200 | 700 | 2.13e-57 | 202 |
MsaG037027 | MtrunA17_Chr8g0369301 | 31.197 | 468 | 234 | 12 | 78 | 474 | 285 | 735 | 8.56e-57 | 201 |
MsaG037027 | MtrunA17_Chr1g0163051 | 29.449 | 472 | 246 | 11 | 79 | 481 | 198 | 651 | 2.50e-53 | 191 |
MsaG037027 | MtrunA17_Chr6g0467421 | 29.247 | 465 | 242 | 14 | 78 | 474 | 117 | 562 | 5.77e-52 | 185 |
MsaG037027 | MtrunA17_Chr6g0467531 | 29.247 | 465 | 242 | 14 | 78 | 474 | 117 | 562 | 1.40e-51 | 184 |
MsaG037027 | MtrunA17_Chr6g0467381 | 29.032 | 465 | 243 | 14 | 78 | 474 | 117 | 562 | 4.23e-51 | 183 |
MsaG037027 | MtrunA17_Chr6g0467401 | 28.817 | 465 | 244 | 14 | 78 | 474 | 117 | 562 | 2.27e-49 | 178 |
MsaG037027 | MtrunA17_Chr3g0094881 | 28.755 | 466 | 222 | 14 | 87 | 474 | 188 | 621 | 3.46e-46 | 170 |
MsaG037027 | MtrunA17_Chr6g0467411 | 28.635 | 447 | 247 | 16 | 78 | 474 | 56 | 480 | 1.01e-44 | 164 |
MsaG037027 | MtrunA17_Chr1g0163041 | 28.092 | 477 | 250 | 13 | 79 | 482 | 115 | 571 | 1.57e-41 | 156 |
MsaG037027 | MtrunA17_Chr2g0306961 | 27.610 | 431 | 243 | 16 | 78 | 474 | 66 | 461 | 3.13e-37 | 142 |
MsaG037027 | MtrunA17_Chr4g0075321 | 35.000 | 200 | 90 | 5 | 310 | 505 | 901 | 1064 | 7.77e-28 | 118 |
MsaG037027 | MtrunA17_Chr5g0403241 | 33.838 | 198 | 95 | 4 | 310 | 505 | 1344 | 1507 | 5.65e-26 | 112 |
MsaG037027 | MtrunA17_Chr8g0373821 | 34.706 | 170 | 80 | 3 | 310 | 477 | 378 | 518 | 5.25e-23 | 102 |
MsaG037027 | MtrunA17_Chr1g0183321 | 30.952 | 210 | 103 | 8 | 297 | 500 | 568 | 741 | 2.19e-18 | 88.6 |
MsaG037027 | MtrunA17_Chr1g0190311 | 32.057 | 209 | 109 | 9 | 297 | 503 | 465 | 642 | 2.63e-18 | 88.2 |
MsaG037027 | MtrunA17_Chr7g0262001 | 31.429 | 210 | 102 | 9 | 297 | 500 | 524 | 697 | 2.48e-14 | 75.9 |
MsaG037027 | MtrunA17_Chr6g0460921 | 23.423 | 222 | 128 | 8 | 284 | 504 | 239 | 419 | 2.52e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037027 | AT2G35160.5 | 40.351 | 570 | 223 | 14 | 7 | 505 | 235 | 758 | 2.52e-115 | 357 |
MsaG037027 | AT2G35160.2 | 40.351 | 570 | 223 | 14 | 7 | 505 | 271 | 794 | 6.88e-115 | 357 |
MsaG037027 | AT2G35160.3 | 40.351 | 570 | 223 | 14 | 7 | 505 | 271 | 794 | 6.88e-115 | 357 |
MsaG037027 | AT2G35160.1 | 40.351 | 570 | 223 | 14 | 7 | 505 | 271 | 794 | 6.88e-115 | 357 |
MsaG037027 | AT2G35160.4 | 40.351 | 570 | 223 | 14 | 7 | 505 | 271 | 794 | 6.88e-115 | 357 |
MsaG037027 | AT2G22740.2 | 40.706 | 538 | 225 | 15 | 45 | 505 | 270 | 790 | 5.13e-110 | 345 |
MsaG037027 | AT2G22740.1 | 40.706 | 538 | 225 | 15 | 45 | 505 | 270 | 790 | 5.13e-110 | 345 |
MsaG037027 | AT5G13960.2 | 32.591 | 494 | 241 | 14 | 90 | 505 | 11 | 490 | 1.16e-62 | 213 |
MsaG037027 | AT5G13960.1 | 32.591 | 494 | 241 | 14 | 90 | 505 | 145 | 624 | 3.32e-62 | 214 |
MsaG037027 | AT1G73100.1 | 29.930 | 568 | 300 | 20 | 6 | 500 | 122 | 664 | 1.56e-59 | 208 |
MsaG037027 | AT5G04940.2 | 30.435 | 483 | 240 | 15 | 90 | 500 | 207 | 665 | 2.18e-56 | 199 |
MsaG037027 | AT5G04940.1 | 30.435 | 483 | 240 | 15 | 90 | 500 | 207 | 665 | 2.18e-56 | 199 |
MsaG037027 | AT2G33290.1 | 28.655 | 513 | 265 | 13 | 44 | 474 | 144 | 637 | 3.47e-50 | 182 |
MsaG037027 | AT2G33290.3 | 28.655 | 513 | 265 | 13 | 44 | 474 | 144 | 637 | 3.47e-50 | 182 |
MsaG037027 | AT2G33290.4 | 28.655 | 513 | 265 | 13 | 44 | 474 | 144 | 637 | 3.47e-50 | 182 |
MsaG037027 | AT2G33290.2 | 28.655 | 513 | 265 | 13 | 44 | 474 | 144 | 637 | 3.47e-50 | 182 |
MsaG037027 | AT4G13460.1 | 29.218 | 486 | 253 | 14 | 60 | 474 | 171 | 636 | 3.65e-48 | 176 |
MsaG037027 | AT4G13460.2 | 29.218 | 486 | 253 | 14 | 60 | 474 | 171 | 636 | 3.65e-48 | 176 |
MsaG037027 | AT2G24740.1 | 30.169 | 474 | 233 | 16 | 93 | 500 | 309 | 750 | 1.81e-46 | 173 |
MsaG037027 | AT1G17770.1 | 27.755 | 490 | 251 | 16 | 90 | 500 | 223 | 688 | 2.10e-43 | 164 |
MsaG037027 | AT5G47150.1 | 38.532 | 218 | 105 | 7 | 41 | 236 | 114 | 324 | 4.69e-28 | 114 |
MsaG037027 | AT2G23740.3 | 28.616 | 318 | 143 | 11 | 238 | 500 | 1089 | 1377 | 1.46e-25 | 111 |
MsaG037027 | AT2G23740.6 | 28.616 | 318 | 143 | 11 | 238 | 500 | 1089 | 1377 | 1.46e-25 | 111 |
MsaG037027 | AT2G23740.2 | 28.616 | 318 | 143 | 11 | 238 | 500 | 1089 | 1377 | 1.46e-25 | 111 |
MsaG037027 | AT2G23740.1 | 28.616 | 318 | 143 | 11 | 238 | 500 | 1082 | 1370 | 1.59e-25 | 111 |
MsaG037027 | AT5G47160.1 | 36.406 | 217 | 109 | 6 | 38 | 232 | 198 | 407 | 1.55e-24 | 106 |
MsaG037027 | AT5G47160.3 | 36.406 | 217 | 109 | 6 | 38 | 232 | 198 | 407 | 1.55e-24 | 106 |
MsaG037027 | AT5G47160.2 | 36.406 | 217 | 109 | 6 | 38 | 232 | 198 | 407 | 1.55e-24 | 106 |
MsaG037027 | AT3G04380.6 | 32.536 | 209 | 107 | 8 | 297 | 503 | 257 | 433 | 7.97e-19 | 89.4 |
MsaG037027 | AT3G04380.1 | 32.536 | 209 | 107 | 8 | 297 | 503 | 284 | 460 | 8.63e-19 | 89.7 |
MsaG037027 | AT3G04380.5 | 32.536 | 209 | 107 | 8 | 297 | 503 | 241 | 417 | 8.66e-19 | 89.4 |
MsaG037027 | AT3G04380.2 | 32.536 | 209 | 107 | 8 | 297 | 503 | 257 | 433 | 8.71e-19 | 89.4 |
MsaG037027 | AT3G04380.4 | 32.536 | 209 | 107 | 8 | 297 | 503 | 284 | 460 | 8.99e-19 | 89.4 |
MsaG037027 | AT3G04380.3 | 32.536 | 209 | 107 | 8 | 297 | 503 | 268 | 444 | 9.28e-19 | 89.4 |
MsaG037027 | AT3G03750.2 | 29.592 | 196 | 108 | 6 | 310 | 504 | 183 | 349 | 3.39e-15 | 77.4 |
MsaG037027 | AT1G04050.2 | 29.665 | 209 | 104 | 8 | 297 | 500 | 548 | 718 | 1.49e-14 | 77.0 |
MsaG037027 | AT1G04050.1 | 29.665 | 209 | 104 | 8 | 297 | 500 | 548 | 718 | 1.49e-14 | 77.0 |
MsaG037027 | AT1G04050.3 | 29.665 | 209 | 104 | 8 | 297 | 500 | 444 | 614 | 1.80e-14 | 76.6 |
MsaG037027 | AT5G43990.8 | 27.751 | 209 | 113 | 6 | 297 | 503 | 463 | 635 | 2.49e-13 | 73.2 |
MsaG037027 | AT5G43990.12 | 27.751 | 209 | 113 | 6 | 297 | 503 | 463 | 635 | 2.49e-13 | 73.2 |
MsaG037027 | AT5G43990.6 | 27.751 | 209 | 113 | 6 | 297 | 503 | 463 | 635 | 2.49e-13 | 73.2 |
MsaG037027 | AT5G43990.13 | 27.751 | 209 | 113 | 6 | 297 | 503 | 463 | 635 | 2.49e-13 | 73.2 |
MsaG037027 | AT5G43990.7 | 27.751 | 209 | 113 | 6 | 297 | 503 | 443 | 615 | 2.51e-13 | 72.8 |
MsaG037027 | AT5G43990.15 | 27.751 | 209 | 113 | 6 | 297 | 503 | 535 | 707 | 3.32e-13 | 72.8 |
MsaG037027 | AT5G43990.10 | 27.751 | 209 | 113 | 6 | 297 | 503 | 535 | 707 | 3.32e-13 | 72.8 |
MsaG037027 | AT5G43990.16 | 27.751 | 209 | 113 | 6 | 297 | 503 | 512 | 684 | 3.62e-13 | 72.4 |
MsaG037027 | AT5G43990.5 | 27.751 | 209 | 113 | 6 | 297 | 503 | 512 | 684 | 3.62e-13 | 72.4 |
MsaG037027 | AT5G43990.17 | 27.751 | 209 | 113 | 6 | 297 | 503 | 512 | 684 | 3.62e-13 | 72.4 |
MsaG037027 | AT5G43990.14 | 27.751 | 209 | 113 | 6 | 297 | 503 | 512 | 684 | 3.62e-13 | 72.4 |
MsaG037027 | AT5G43990.9 | 27.751 | 209 | 113 | 6 | 297 | 503 | 555 | 727 | 3.89e-13 | 72.4 |
MsaG037027 | AT5G43990.2 | 27.751 | 209 | 113 | 6 | 297 | 503 | 555 | 727 | 3.89e-13 | 72.4 |
MsaG037027 | AT5G43990.3 | 27.751 | 209 | 113 | 6 | 297 | 503 | 532 | 704 | 4.02e-13 | 72.4 |
MsaG037027 | AT5G43990.11 | 27.751 | 209 | 113 | 6 | 297 | 503 | 532 | 704 | 4.02e-13 | 72.4 |
MsaG037027 | AT5G43990.1 | 27.751 | 209 | 113 | 6 | 297 | 503 | 532 | 704 | 4.02e-13 | 72.4 |
MsaG037027 | AT5G43990.4 | 27.751 | 209 | 113 | 6 | 297 | 503 | 532 | 704 | 4.02e-13 | 72.4 |
MsaG037027 | AT2G05900.1 | 27.468 | 233 | 116 | 10 | 111 | 306 | 1 | 217 | 7.89e-13 | 69.7 |
MsaG037027 | AT1G76710.3 | 29.703 | 202 | 93 | 10 | 281 | 477 | 51 | 208 | 6.55e-11 | 65.1 |
MsaG037027 | AT1G76710.4 | 29.703 | 202 | 93 | 10 | 281 | 477 | 51 | 208 | 6.57e-11 | 65.1 |
MsaG037027 | AT1G76710.2 | 29.703 | 202 | 93 | 10 | 281 | 477 | 51 | 208 | 9.41e-11 | 64.7 |
MsaG037027 | AT1G76710.1 | 29.703 | 202 | 93 | 10 | 281 | 477 | 51 | 208 | 9.41e-11 | 64.7 |
Find 84 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATAAAGTTGAATCTATT+TGG | 0.088477 | 7:-50400767 | MsaT037027.1:CDS |
TTTACCACTTGAAGCTTCTA+AGG | 0.221245 | 7:+50400206 | None:intergenic |
GATGAGTATTTATTTAATAT+TGG | 0.230586 | 7:-50400309 | MsaT037027.1:CDS |
AACATTTCGAGCAAACAAAT+TGG | 0.261209 | 7:+50400089 | None:intergenic |
AACTTTATAATAACTCTAAT+AGG | 0.276626 | 7:+50400852 | None:intergenic |
TTTCTTGATTGGTGTTTCAT+TGG | 0.287334 | 7:+50401361 | None:intergenic |
GGAGGTAATGTCATTAATTC+TGG | 0.290555 | 7:-50400927 | MsaT037027.1:CDS |
GGTGAGGTTTATTGTTACTA+TGG | 0.296718 | 7:-50400792 | MsaT037027.1:CDS |
GACAATGAGAGTATTGTTAA+AGG | 0.316193 | 7:-50401402 | None:intergenic |
TTATAAAGTTGAATCTATTT+GGG | 0.319297 | 7:-50400766 | MsaT037027.1:CDS |
ACGATTGATGCTGCTAAGTA+TGG | 0.327893 | 7:-50400147 | MsaT037027.1:CDS |
TCAGAGAATGCAATTCCTTC+TGG | 0.338329 | 7:-50400399 | MsaT037027.1:CDS |
GAATCATTGAAAAGCCATTC+AGG | 0.342986 | 7:+50400576 | None:intergenic |
AATTCTGGAGAATGTGATAA+AGG | 0.344872 | 7:-50400912 | MsaT037027.1:CDS |
ACAAAAGTGTTCGTTTATAC+AGG | 0.350376 | 7:-50400954 | MsaT037027.1:CDS |
TCTCATTGATTACGTGATAA+AGG | 0.363505 | 7:-50401033 | MsaT037027.1:CDS |
CTCGTAACATTTATCCTGAA+TGG | 0.372209 | 7:-50400590 | MsaT037027.1:CDS |
TTGTCACCTACTTCAATTCC+AGG | 0.384331 | 7:+50401110 | None:intergenic |
TTCATATATGGTTGATAGTA+AGG | 0.403159 | 7:-50400247 | MsaT037027.1:CDS |
GTGGTTAATCGTATAGATTC+TGG | 0.413281 | 7:-50400639 | MsaT037027.1:CDS |
TTTAAACGCAGTTTCTTGAT+TGG | 0.417146 | 7:+50401350 | None:intergenic |
GTGGGCAGAGGATTCATATA+TGG | 0.427156 | 7:-50400259 | MsaT037027.1:CDS |
ACAAATTGGGAGAACAACTA+TGG | 0.427505 | 7:+50400103 | None:intergenic |
CGTTGTGAAGATGCAACTTC+AGG | 0.429661 | 7:-50401323 | MsaT037027.1:CDS |
ATACGATTAACCACACATAT+AGG | 0.451047 | 7:+50400648 | None:intergenic |
ACATTTCGAGCAAACAAATT+GGG | 0.454582 | 7:+50400090 | None:intergenic |
TGGCAAGAACTCAATGTTGT+TGG | 0.454774 | 7:-50401077 | MsaT037027.1:CDS |
ATTCTGGAGAATGTGATAAA+GGG | 0.456300 | 7:-50400911 | MsaT037027.1:CDS |
GATGGTGGTGCACGTGGTGG+AGG | 0.467831 | 7:-50400813 | MsaT037027.1:CDS |
CGCTTCCTATCGAAGTGTTA+CGG | 0.469032 | 7:-50401190 | MsaT037027.1:CDS |
CCCTCCACTCTTAAGAGCAC+AGG | 0.479558 | 7:+50400503 | None:intergenic |
TTTCTTTCTTCTTGAGTCAT+CGG | 0.493504 | 7:+50401280 | None:intergenic |
AAAATTATTGGAAATGTCCC+TGG | 0.496911 | 7:-50401128 | MsaT037027.1:CDS |
CAAGACTAAGGCGAAAGGAT+GGG | 0.513493 | 7:-50400430 | MsaT037027.1:CDS |
AGGTGAGATTATTGAAGATG+AGG | 0.514537 | 7:-50400355 | MsaT037027.1:CDS |
CGTGCTCTCTGTGGAAAACT+CGG | 0.520054 | 7:-50401233 | MsaT037027.1:CDS |
ATAAAGTTTAATTCAAAGAA+CGG | 0.520311 | 7:-50400837 | MsaT037027.1:CDS |
TTTGTTAAAGATATTTCCAA+TGG | 0.523563 | 7:-50400684 | MsaT037027.1:CDS |
GGTCTATAGTTCGTGGGCAG+AGG | 0.524655 | 7:-50400271 | MsaT037027.1:CDS |
AAGACGAAAGCATGTTATTG+TGG | 0.528019 | 7:-50399934 | MsaT037027.1:CDS |
TAGGTGACAAGTTTCAGTAT+TGG | 0.528561 | 7:-50401097 | MsaT037027.1:CDS |
TCAAGACTAAGGCGAAAGGA+TGG | 0.530216 | 7:-50400431 | MsaT037027.1:CDS |
AGAATCCGTAACACTTCGAT+AGG | 0.530953 | 7:+50401185 | None:intergenic |
TTTAATTCAAAGAACGGTGA+TGG | 0.533344 | 7:-50400831 | MsaT037027.1:CDS |
CAAAAGTGTTCGTTTATACA+GGG | 0.533398 | 7:-50400953 | MsaT037027.1:CDS |
AGAAGCTTCAAGTGGTAAAG+AGG | 0.540440 | 7:-50400202 | MsaT037027.1:CDS |
AAGACTAAGGCGAAAGGATG+GGG | 0.542189 | 7:-50400429 | MsaT037027.1:CDS |
TTACCACTTGAAGCTTCTAA+GGG | 0.542917 | 7:+50400207 | None:intergenic |
CTAAGTATGGTAACGTGGCA+AGG | 0.558339 | 7:-50400134 | MsaT037027.1:CDS |
ATTGATGATCGATGTGATAG+TGG | 0.558469 | 7:-50400177 | MsaT037027.1:CDS |
ACTATCACATCGATCATCAA+TGG | 0.565161 | 7:+50400179 | None:intergenic |
TCCTGTGCTCTTAAGAGTGG+AGG | 0.568183 | 7:-50400504 | MsaT037027.1:CDS |
TTCACAAGGTCTATAGTTCG+TGG | 0.573569 | 7:-50400278 | MsaT037027.1:CDS |
TCTCTGTGGAAAACTCGGTA+AGG | 0.590987 | 7:-50401228 | MsaT037027.1:CDS |
TATTGGAAATTATATTCACA+AGG | 0.594119 | 7:-50400292 | MsaT037027.1:CDS |
GGTGATGGTGGTGCACGTGG+TGG | 0.594627 | 7:-50400816 | MsaT037027.1:CDS |
AAAGTCAGCTCATTCATGCT+CGG | 0.596521 | 7:+50400006 | None:intergenic |
TCACAAATAAAATGTCCAGA+AGG | 0.599161 | 7:+50400384 | None:intergenic |
TGTTCCTGTGCTCTTAAGAG+TGG | 0.599372 | 7:-50400507 | MsaT037027.1:CDS |
GTGTTCGTTTATACAGGGGA+AGG | 0.599990 | 7:-50400948 | MsaT037027.1:CDS |
CCTGTGCTCTTAAGAGTGGA+GGG | 0.608017 | 7:-50400503 | MsaT037027.1:CDS |
TTTACGATGATGATGATCTG+AGG | 0.608183 | 7:-50400065 | MsaT037027.1:CDS |
AATCTCATCAATACAGTCGA+CGG | 0.610597 | 7:+50399896 | None:intergenic |
TTCGTTTATACAGGGGAAGG+AGG | 0.611584 | 7:-50400945 | MsaT037027.1:CDS |
TTCGATAGGAAGCGCATCGG+CGG | 0.613954 | 7:+50401199 | None:intergenic |
ATGATCGATGTGATAGTGGT+AGG | 0.614728 | 7:-50400173 | MsaT037027.1:CDS |
GAGGAAAATTCACTCACGAT+GGG | 0.618861 | 7:-50401154 | MsaT037027.1:CDS |
TGGTGCACGTGGTGGAGGTG+AGG | 0.620143 | 7:-50400808 | MsaT037027.1:CDS |
TCACAAGGTCTATAGTTCGT+GGG | 0.620772 | 7:-50400277 | MsaT037027.1:CDS |
AATGTCCCTGGAATTGAAGT+AGG | 0.621360 | 7:-50401116 | MsaT037027.1:CDS |
AATTCAAAGAACGGTGATGG+TGG | 0.630541 | 7:-50400828 | MsaT037027.1:CDS |
GGTAACTTCCGTGCTCTCTG+TGG | 0.631604 | 7:-50401242 | MsaT037027.1:CDS |
TAATCGTATAGATTCTGGCA+AGG | 0.632162 | 7:-50400634 | MsaT037027.1:CDS |
AGAGGAAAATTCACTCACGA+TGG | 0.634330 | 7:-50401155 | MsaT037027.1:CDS |
CACTTCGATAGGAAGCGCAT+CGG | 0.639187 | 7:+50401196 | None:intergenic |
TGTCACCTACTTCAATTCCA+GGG | 0.640833 | 7:+50401111 | None:intergenic |
CAACCCTTAGAAGCTTCAAG+TGG | 0.647600 | 7:-50400210 | MsaT037027.1:CDS |
AACGGTGATGGTGGTGCACG+TGG | 0.655380 | 7:-50400819 | MsaT037027.1:CDS |
GAGTCATCGGAAGTCAGAGA+CGG | 0.660263 | 7:+50401293 | None:intergenic |
AAAAGTGTTCGTTTATACAG+GGG | 0.661822 | 7:-50400952 | MsaT037027.1:CDS |
AGAAGCTGTTCCTATATGTG+TGG | 0.665038 | 7:-50400658 | MsaT037027.1:CDS |
AACACATTTACGCCCAACAG+AGG | 0.665095 | 7:+50400554 | None:intergenic |
GCTGCATATAGCATGATGTG+TGG | 0.717627 | 7:+50400039 | None:intergenic |
TGCTGCTAAGTATGGTAACG+TGG | 0.728265 | 7:-50400139 | MsaT037027.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 50399903 | 50401420 | 50399903 | ID=MsaG037027 |
Chr7 | mRNA | 50399903 | 50401420 | 50399903 | ID=MsaT037027.1;Parent=MsaG037027 |
Chr7 | exon | 50399903 | 50401420 | 50399903 | ID=MsaT037027.1.exon1;Parent=MsaT037027.1 |
Chr7 | CDS | 50399903 | 50401420 | 50399903 | ID=cds.MsaT037027.1;Parent=MsaT037027.1 |
Gene Sequence |
Protein sequence |