AlfalfaGEDB | MsaG037033

M. sativa ssp. caerulea / MsaG037033

KEGG: K11420
GO: -
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037033	XP_013448347.2	84.588	558	63	3	1	554	1	539	0.0	949

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037033	sp\|O82175\|SUVH5_ARATH	42.238	554	194	17	80	554	288	794	2.28e-117	368

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037033	tr\|A0A396H1J2\|A0A396H1J2_MEDTR	84.588	558	63	3	1	554	1	539	0.0	949

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037033	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037033	MtrunA17_Chr7g0232811	84.588	558	63	3	1	554	1	539	0.0	949
MsaG037033	MtrunA17_Chr7g0232841	81.932	559	65	6	1	554	1	528	0.0	877
MsaG037033	MtrunA17_Chr7g0232981	77.639	559	77	7	1	554	1	516	0.0	820
MsaG037033	MtrunA17_Chr7g0232761	83.154	279	42	2	1	279	1	274	5.01e-155	444
MsaG037033	MtrunA17_Chr5g0399801	44.015	543	206	13	87	554	570	1089	1.51e-131	410
MsaG037033	MtrunA17_Chr7g0232861	76.357	258	43	2	7	264	3	242	1.13e-130	381
MsaG037033	MtrunA17_Chr4g0003511	41.929	539	222	11	87	554	534	1052	1.33e-122	385
MsaG037033	MtrunA17_Chr4g0003501	41.682	535	215	11	93	554	445	955	1.14e-119	375
MsaG037033	MtrunA17_Chr7g0232751	94.958	119	6	0	436	554	1	119	3.77e-77	239
MsaG037033	MtrunA17_Chr1g0170651	32.343	572	244	17	78	554	23	546	2.35e-71	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037033	AT2G35160.5	42.210	552	197	16	80	554	252	758	1.34e-118	368
MsaG037033	AT2G35160.2	42.238	554	194	17	80	554	288	794	2.32e-118	368
MsaG037033	AT2G35160.3	42.238	554	194	17	80	554	288	794	2.32e-118	368
MsaG037033	AT2G35160.1	42.238	554	194	17	80	554	288	794	2.32e-118	368
MsaG037033	AT2G35160.4	42.238	554	194	17	80	554	288	794	2.32e-118	368
MsaG037033	AT2G22740.2	41.527	537	218	17	98	554	270	790	4.03e-112	352
MsaG037033	AT2G22740.1	41.527	537	218	17	98	554	270	790	4.03e-112	352
MsaG037033	AT5G13960.2	33.267	502	239	15	135	554	3	490	8.02e-63	214
MsaG037033	AT5G13960.1	33.068	502	240	15	135	554	137	624	1.36e-62	217
MsaG037033	AT1G73100.1	29.834	543	278	17	85	549	147	664	1.80e-59	209

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Find 99 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTCGTTTATACAG+GGG	0.661822	7:+50508204	MsaT037033.1:CDS
AAAATTATTGGAAATGTCCC+TGG	0.496911	7:+50508028	MsaT037033.1:CDS
AAACGATCTTAGAGAATCAG+AGG	0.603303	7:+50507813	MsaT037033.1:CDS
AAACTCGGTAACGAATTTAC+CGG	0.517987	7:+50507938	MsaT037033.1:CDS
AAAGTCAGCTCATTCATGCT+CGG	0.596521	7:-50509138	None:intergenic
AAATGGTTTGTGTTGTTGGT+TGG	0.505226	7:-50507630	None:intergenic
AACATTTCGAGCAAACAAAT+TGG	0.261209	7:-50509055	None:intergenic
AACCATTTCAAGTCTGCAAC+AGG	0.438779	7:+50507645	MsaT037033.1:CDS
AACGGTGGTGGTGGTGCACG+TGG	0.573546	7:+50508337	MsaT037033.1:CDS
AACTTTATAATAACTCTAAT+AGG	0.276626	7:-50508304	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50507599	50509263	50507599	ID=MsaG037033
Chr7	mRNA	50507599	50509263	50507599	ID=MsaT037033.1;Parent=MsaG037033
Chr7	exon	50507599	50509263	50507599	ID=MsaT037033.1.exon1;Parent=MsaT037033.1
Chr7	CDS	50507599	50509263	50507599	ID=cds.MsaT037033.1;Parent=MsaT037033.1

Gene Sequence

>MsaT037033.1

ATGGCTAAGACGAAGCCCTCGTCTTCCACTACCAACCAACAACACAAACCATTTCAAGTCTGCAACAGGAACTTTACTGAAAGATCATTGTTGTTCAAGAATGTCAGCACAACGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAAGGAAACACCAATCAAGAAACTGCGTTTAAAACGTTGTTATGCATATGAACCTTCAGCTAGCAAAACGATCTTAGAGAATCAGAGGAAAGAAAGAATCAATGACAAAAACATGCCGTCTTTGATTTCCGATGACTCAAGAAGAAAGAAAGTTAAAACAACATTAGGTAACTTCCGTGCTCTCTGTGGAAAACTCGGTAACGAATTTACCGGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGAGGCAAGTTCATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAACGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAGAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTCGAATCTATTTGGGAAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTATAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCAATAGTTCGTGGGAGGAGGATTCATCTATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAACTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACCATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCACAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACGATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA

Protein sequence

>MsaT037033.1

MAKTKPSSSTTNQQHKPFQVCNRNFTERSLLFKNVSTTRVLSKVQRNTETKETPIKKLRLKRCYAYEPSASKTILENQRKERINDKNMPSLISDDSRRKKVKTTLGNFRALCGKLGNEFTGDALPIKVSRVLKQRGKFIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYTGEGGNVINSGECDKGNLALMNSFAVKNPIRVIIKFNSKNGGGGARGGGEVYCYYGLYKVESIWEKKGKLDFKFCLVRLPDQKFFVIDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVNSSWEEDSSMVDSKEMSSYQPLEASTGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYDDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECIRRLY*