AlfalfaGEDB | MsaG037047

M. sativa ssp. caerulea / MsaG037047

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037047	XP_013448347.2	65.498	542	49	5	1	407	1	539	0.0	657

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037047	sp\|Q8VZ17\|SUVH6_ARATH	51.531	196	82	3	212	407	608	790	1.29e-57	204
MsaG037047	sp\|Q8VZ17\|SUVH6_ARATH	44.086	93	50	2	77	167	304	396	6.00e-15	80.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037047	tr\|A0A396H1J2\|A0A396H1J2_MEDTR	65.498	542	49	5	1	407	1	539	0.0	657

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037047	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037047	MtrunA17_Chr7g0232811	65.498	542	49	5	1	407	1	539	0.0	657
MsaG037047	MtrunA17_Chr7g0232841	62.431	543	53	8	1	407	1	528	0.0	585
MsaG037047	MtrunA17_Chr7g0232981	61.538	533	62	6	1	407	1	516	0.0	576
MsaG037047	MtrunA17_Chr7g0232861	63.519	233	30	2	7	184	3	235	1.22e-89	271
MsaG037047	MtrunA17_Chr7g0232761	61.134	247	20	4	1	176	1	242	6.95e-87	265
MsaG037047	MtrunA17_Chr7g0232751	90.756	119	11	0	289	407	1	119	5.51e-75	229
MsaG037047	MtrunA17_Chr7g0232871	90.291	103	10	0	205	307	8	110	2.08e-59	188
MsaG037047	MtrunA17_Chr5g0399801	52.551	196	79	3	212	407	908	1089	5.21e-59	207
MsaG037047	MtrunA17_Chr5g0399801	42.017	119	54	3	62	167	589	705	3.76e-22	99.4
MsaG037047	MtrunA17_Chr4g0003511	51.531	196	81	3	212	407	871	1052	6.44e-58	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037047	AT2G22740.2	51.531	196	82	3	212	407	608	790	1.31e-58	204
MsaG037047	AT2G22740.2	44.086	93	50	2	77	167	304	396	6.10e-16	80.5
MsaG037047	AT2G22740.1	51.531	196	82	3	212	407	608	790	1.31e-58	204
MsaG037047	AT2G22740.1	44.086	93	50	2	77	167	304	396	6.10e-16	80.5
MsaG037047	AT2G35160.5	47.449	196	63	2	212	407	603	758	6.25e-55	194
MsaG037047	AT2G35160.5	50.562	89	39	3	83	167	309	396	3.01e-18	87.4
MsaG037047	AT2G35160.2	47.449	196	63	2	212	407	639	794	8.02e-55	194
MsaG037047	AT2G35160.2	50.562	89	39	3	83	167	345	432	2.96e-18	87.4
MsaG037047	AT2G35160.3	47.449	196	63	2	212	407	639	794	8.02e-55	194
MsaG037047	AT2G35160.3	50.562	89	39	3	83	167	345	432	2.96e-18	87.4

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Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTCGTTTATACAG+GGG	0.661822	7:-50706073	MsaT037047.1:CDS
AAAATTATTGGAAATGTCCC+TGG	0.496911	7:-50706249	MsaT037047.1:CDS
AAACTTGGTAACGAATTTAC+CGG	0.420379	7:-50706339	MsaT037047.1:CDS
AAAGTCAGCTCATTCATGCT+CGG	0.596521	7:+50705037	None:intergenic
AACAGTTCGAGCAAACAAAT+TGG	0.310686	7:+50705120	None:intergenic
AACCCTTAGAAGCTTCAATT+GGG	0.496929	7:-50705240	MsaT037047.1:CDS
AACCTTTGACAATACTCTCC+TGG	0.482538	7:+50706569	None:intergenic
AACGGTGGTGGTGGTGCACG+TGG	0.627456	7:-50705941	MsaT037047.1:CDS
AAGACGAAAGCATGTTATTG+TGG	0.528019	7:-50704965	MsaT037047.1:CDS
AAGACTAAGGCGAAAGGATG+GGG	0.542189	7:-50705460	MsaT037047.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50704934	50706700	50704934	ID=MsaG037047
Chr7	mRNA	50704934	50706700	50704934	ID=MsaT037047.1;Parent=MsaG037047
Chr7	exon	50704934	50705542	50704934	ID=MsaT037047.1.exon5;Parent=MsaT037047.1
Chr7	CDS	50704934	50705542	50704934	ID=cds.MsaT037047.1;Parent=MsaT037047.1
Chr7	exon	50705757	50705818	50705757	ID=MsaT037047.1.exon4;Parent=MsaT037047.1
Chr7	CDS	50705757	50705818	50705757	ID=cds.MsaT037047.1;Parent=MsaT037047.1
Chr7	exon	50705936	50705986	50705936	ID=MsaT037047.1.exon3;Parent=MsaT037047.1
Chr7	CDS	50705936	50705986	50705936	ID=cds.MsaT037047.1;Parent=MsaT037047.1
Chr7	exon	50706067	50706384	50706067	ID=MsaT037047.1.exon2;Parent=MsaT037047.1
Chr7	CDS	50706067	50706384	50706067	ID=cds.MsaT037047.1;Parent=MsaT037047.1
Chr7	exon	50706517	50706700	50706517	ID=MsaT037047.1.exon1;Parent=MsaT037047.1
Chr7	CDS	50706517	50706700	50706517	ID=cds.MsaT037047.1;Parent=MsaT037047.1

Gene Sequence

>MsaT037047.1

ATGACTAAGATGAAGCCCTCGTCTTCCACTACGAACCAACAACACAAACCATTTCAAGTCTCCAACAAGAACTTTACTGAAAGATCATTGTTGTTCAAAAATGTAAGCACCAGGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAAGGAAACACCAATCAAGAAACTGTGTTTAAAACGTAACTTCCGTGCTCTCTGTGGAAAACTTGGTAACGAATTTACCGGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGAGGCAAGTTCATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAATGTTGTTGGTCTTCATCGTCAGAATGTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGAAACTAGCATTGTTTCTTGTCATTTTGACGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGAAGATATTTCCAATGGAAAAGAAGTTGTTTCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAAAGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTTAGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATGAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATATAATATTGGCAATTATATTCACAAGGTCTGTAGTTCATGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGCTGAGTTCATATCAACCCTTAGAAGCTTCAATTGGGAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACCATTGATGTTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAACTGTTCTTTTCGATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCGGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACATAATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTATATTGA

Protein sequence

>MsaT037047.1

MTKMKPSSSTTNQQHKPFQVSNKNFTERSLLFKNVSTRRVLSKVQRNTETKETPIKKLCLKRNFRALCGKLGNEFTGDALPIKVSRVLKQRGKFIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNVSLIDYVIKDDNLIETSIVSCHFDDMDDTKVFVYTGEGVIIKFNSKNGGGGARGEDISNGKEVVSICVVNRIDSGKSGGKIPRVKKKEIKFKLQIFKTKAKGWGVRSENAIPLGSFICEYLGEIIEDEEALKIVDNDEYLYNIGNYIHKVCSSWEEDSYMVDSKELSSYQPLEASIGKEAIDDRCDSGRFTIDVAKYGNVARFINHSCSPNLFARTVLFDDDDLRIPHIMLYAAENIPSMNELTLNYNYIIDQVIDSNGNLKTKACYCGASECIRRLY*