AlfalfaGEDB | MsaG037052

M. sativa ssp. caerulea / MsaG037052

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00856.31

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037052	XP_013448347.2	90.594	202	19	0	1	202	330	531	1.63e-129	386

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037052	sp\|Q8VZ17\|SUVH6_ARATH	44.783	230	83	4	3	202	567	782	1.19e-56	195

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037052	tr\|A0A396H1J2\|A0A396H1J2_MEDTR	90.594	202	19	0	1	202	330	531	7.78e-130	386

TFs/TRs:

Gene ID	Type	Classification
MsaG037052	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000447	MsaG037052	0.828724	1.373465e-54	3.832806e-52
MsaG001328	MsaG037052	0.800245	2.636815e-48	3.584829e-46
MsaG004441	MsaG037052	0.805617	2.071470e-49	3.185856e-47
MsaG046013	MsaG037052	0.842533	4.540161e-58	1.920643e-55
MsaG018001	MsaG037052	0.807432	8.611987e-50	1.382518e-47
MsaG037052	MsaG043461	0.816432	9.628967e-52	1.930202e-49
MsaG018116	MsaG037052	0.807279	9.277890e-50	1.483956e-47
MsaG019951	MsaG037052	0.800505	2.336263e-48	3.194936e-46
MsaG020519	MsaG037052	0.802870	7.681031e-49	1.108445e-46
MsaG020586	MsaG037052	0.802141	1.084089e-48	1.538504e-46
MsaG023816	MsaG037052	0.811961	9.252048e-51	1.657650e-48
MsaG024862	MsaG037052	0.800102	2.818669e-48	3.819762e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037052	MtrunA17_Chr7g0232811	90.594	202	19	0	1	202	330	531	1.50e-133	386
MsaG037052	MtrunA17_Chr7g0232841	89.163	203	21	1	1	202	318	520	1.15e-129	375
MsaG037052	MtrunA17_Chr7g0232981	79.703	202	27	1	1	202	321	508	4.93e-105	312
MsaG037052	MtrunA17_Chr7g0232751	92.793	111	8	0	92	202	1	111	2.37e-72	215
MsaG037052	MtrunA17_Chr7g0232871	90.000	110	11	0	1	110	1	110	4.55e-69	207
MsaG037052	MtrunA17_Chr5g0399801	45.833	240	87	4	2	212	866	1091	3.99e-60	203
MsaG037052	MtrunA17_Chr4g0003511	45.217	230	83	4	2	202	829	1044	6.63e-58	197
MsaG037052	MtrunA17_Chr4g0003501	44.783	230	82	4	2	202	734	947	2.01e-54	187
MsaG037052	MtrunA17_Chr7g0252211	38.119	202	110	4	3	202	561	749	2.01e-38	141
MsaG037052	MtrunA17_Chr6g0476111	38.424	203	108	5	3	202	498	686	2.26e-38	140
MsaG037052	MtrunA17_Chr6g0476121	38.424	203	108	5	3	202	447	635	1.86e-37	137
MsaG037052	MtrunA17_Chr1g0170651	35.417	192	76	3	13	202	393	538	1.54e-32	123
MsaG037052	MtrunA17_Chr3g0080761	35.714	196	105	5	15	204	478	658	3.20e-32	123
MsaG037052	MtrunA17_Chr8g0354821	35.385	195	102	6	15	202	503	680	1.56e-29	115
MsaG037052	MtrunA17_Chr8g0369301	31.553	206	98	3	3	179	544	735	1.88e-28	112
MsaG037052	MtrunA17_Chr4g0075321	34.375	192	86	5	15	202	901	1056	3.40e-28	112
MsaG037052	MtrunA17_Chr7g0255181	35.263	190	93	6	15	202	536	697	9.49e-28	110
MsaG037052	MtrunA17_Chr5g0403241	34.483	174	79	2	15	183	1344	1487	7.25e-27	108
MsaG037052	MtrunA17_Chr8g0373821	34.211	190	86	5	15	202	378	530	2.16e-26	106
MsaG037052	MtrunA17_Chr8g0368901	30.476	210	97	4	3	180	564	756	4.59e-26	105
MsaG037052	MtrunA17_Chr8g0368911	34.409	186	104	5	3	188	589	756	6.09e-26	105
MsaG037052	MtrunA17_Chr1g0163051	32.335	167	97	3	15	180	494	645	4.25e-25	102
MsaG037052	MtrunA17_Chr6g0467421	30.952	168	97	4	15	179	411	562	1.30e-24	101
MsaG037052	MtrunA17_Chr6g0467381	30.952	168	97	4	15	179	411	562	1.40e-24	101
MsaG037052	MtrunA17_Chr2g0306961	30.939	181	103	5	3	180	301	462	2.10e-24	100
MsaG037052	MtrunA17_Chr6g0467531	31.548	168	96	4	15	179	411	562	2.42e-24	100
MsaG037052	MtrunA17_Chr6g0467411	30.357	168	98	4	15	179	329	480	6.96e-24	99.0
MsaG037052	MtrunA17_Chr3g0094881	30.556	180	103	3	3	179	461	621	1.48e-23	98.2
MsaG037052	MtrunA17_Chr6g0467401	30.357	168	98	4	15	179	411	562	4.09e-23	97.1
MsaG037052	MtrunA17_Chr1g0163041	29.885	174	106	3	15	187	413	571	7.40e-20	87.4
MsaG037052	MtrunA17_Chr1g0190311	32.020	203	105	8	2	202	465	636	1.03e-18	84.3
MsaG037052	MtrunA17_Chr1g0183321	30.918	207	101	8	2	202	568	738	4.21e-18	82.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037052	AT2G22740.2	44.783	230	83	4	3	202	567	782	1.21e-57	195
MsaG037052	AT2G22740.1	44.783	230	83	4	3	202	567	782	1.21e-57	195
MsaG037052	AT2G35160.5	41.379	232	68	3	3	206	563	754	4.35e-54	185
MsaG037052	AT2G35160.2	41.379	232	68	3	3	206	599	790	5.05e-54	185
MsaG037052	AT2G35160.3	41.379	232	68	3	3	206	599	790	5.05e-54	185
MsaG037052	AT2G35160.1	41.379	232	68	3	3	206	599	790	5.05e-54	185
MsaG037052	AT2G35160.4	41.379	232	68	3	3	206	599	790	5.05e-54	185
MsaG037052	AT5G13960.2	36.634	202	116	4	3	204	295	484	1.76e-36	134
MsaG037052	AT5G13960.1	36.634	202	116	4	3	204	429	618	4.93e-36	134
MsaG037052	AT1G73100.1	34.031	191	108	5	15	202	486	661	3.20e-27	109
MsaG037052	AT5G04940.2	34.184	196	101	8	15	202	487	662	1.60e-26	107
MsaG037052	AT5G04940.1	34.184	196	101	8	15	202	487	662	1.60e-26	107
MsaG037052	AT4G13460.1	33.735	166	97	2	15	180	485	637	4.37e-25	103
MsaG037052	AT4G13460.2	33.735	166	97	2	15	180	485	637	4.37e-25	103
MsaG037052	AT2G23740.1	31.795	195	94	4	15	204	1209	1369	2.49e-24	101
MsaG037052	AT2G23740.3	31.795	195	94	4	15	204	1216	1376	2.59e-24	101
MsaG037052	AT2G23740.6	31.795	195	94	4	15	204	1216	1376	2.59e-24	101
MsaG037052	AT2G23740.2	31.795	195	94	4	15	204	1216	1376	2.59e-24	101
MsaG037052	AT2G24740.1	30.702	228	111	7	3	202	539	747	1.65e-22	95.9
MsaG037052	AT1G17770.1	32.461	191	110	4	15	202	511	685	1.46e-21	93.2
MsaG037052	AT2G33290.1	30.120	166	102	2	15	180	487	638	1.22e-20	90.5
MsaG037052	AT2G33290.3	30.120	166	102	2	15	180	487	638	1.22e-20	90.5
MsaG037052	AT2G33290.4	30.120	166	102	2	15	180	487	638	1.22e-20	90.5
MsaG037052	AT2G33290.2	30.120	166	102	2	15	180	487	638	1.22e-20	90.5
MsaG037052	AT3G04380.6	32.512	203	103	7	2	202	257	427	3.06e-20	89.0
MsaG037052	AT3G04380.5	32.512	203	103	7	2	202	241	411	3.08e-20	88.6
MsaG037052	AT3G04380.2	32.512	203	103	7	2	202	257	427	3.15e-20	89.0
MsaG037052	AT3G04380.4	32.512	203	103	7	2	202	284	454	3.84e-20	88.6
MsaG037052	AT3G04380.1	32.512	203	103	7	2	202	284	454	4.26e-20	88.6
MsaG037052	AT3G04380.3	32.512	203	103	7	2	202	268	438	4.67e-20	88.2
MsaG037052	AT1G04050.2	29.557	203	106	7	2	202	548	715	3.44e-17	80.5
MsaG037052	AT1G04050.1	29.557	203	106	7	2	202	548	715	3.44e-17	80.5
MsaG037052	AT1G04050.3	29.557	203	106	7	2	202	444	611	4.09e-17	80.1
MsaG037052	AT5G43990.8	28.571	203	107	6	2	202	463	629	6.79e-16	76.6
MsaG037052	AT5G43990.12	28.571	203	107	6	2	202	463	629	6.79e-16	76.6
MsaG037052	AT5G43990.6	28.571	203	107	6	2	202	463	629	6.79e-16	76.6
MsaG037052	AT5G43990.13	28.571	203	107	6	2	202	463	629	6.79e-16	76.6
MsaG037052	AT5G43990.7	28.571	203	107	6	2	202	443	609	6.98e-16	76.6
MsaG037052	AT5G43990.15	28.571	203	107	6	2	202	535	701	6.99e-16	76.6
MsaG037052	AT5G43990.10	28.571	203	107	6	2	202	535	701	6.99e-16	76.6
MsaG037052	AT5G43990.9	28.571	203	107	6	2	202	555	721	7.97e-16	76.3
MsaG037052	AT5G43990.2	28.571	203	107	6	2	202	555	721	7.97e-16	76.3
MsaG037052	AT5G43990.3	28.571	203	107	6	2	202	532	698	7.98e-16	76.3
MsaG037052	AT5G43990.11	28.571	203	107	6	2	202	532	698	7.98e-16	76.3
MsaG037052	AT5G43990.1	28.571	203	107	6	2	202	532	698	7.98e-16	76.3
MsaG037052	AT5G43990.4	28.571	203	107	6	2	202	532	698	7.98e-16	76.3
MsaG037052	AT5G43990.16	28.571	203	107	6	2	202	512	678	8.38e-16	76.3
MsaG037052	AT5G43990.5	28.571	203	107	6	2	202	512	678	8.38e-16	76.3
MsaG037052	AT5G43990.17	28.571	203	107	6	2	202	512	678	8.38e-16	76.3
MsaG037052	AT5G43990.14	28.571	203	107	6	2	202	512	678	8.38e-16	76.3
MsaG037052	AT2G23740.4	31.783	129	53	3	15	138	1216	1314	3.19e-13	68.9
MsaG037052	AT2G23740.5	31.783	129	53	3	15	138	1216	1314	3.19e-13	68.9
MsaG037052	AT1G76710.3	31.892	185	75	9	24	206	90	225	3.37e-12	65.5
MsaG037052	AT1G76710.4	31.892	185	75	9	24	206	90	225	3.59e-12	65.5
MsaG037052	AT1G76710.2	31.892	185	75	9	24	206	90	225	3.69e-12	65.5
MsaG037052	AT1G76710.1	31.892	185	75	9	24	206	90	225	3.69e-12	65.5

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTTCGAGCAAACAAAT+TGG	0.261209	7:-50835590	None:intergenic
ACCATTGATGCTGCTAAGTA+TGG	0.290913	7:+50835532	MsaT037052.1:CDS
TCAGAGAATGCAATTCCTTT+TGG	0.305406	7:+50835280	MsaT037052.1:CDS
TTACCACTTGAAGCTTCTAA+TGG	0.371088	7:-50835472	None:intergenic
TTCATATATGGTTGATAGTA+AGG	0.403159	7:+50835432	MsaT037052.1:CDS
ATTATATTCACAAGGTCTAT+AGG	0.407539	7:+50835395	MsaT037052.1:CDS
ACAAATTGGGAGAACAACTA+TGG	0.427505	7:-50835576	None:intergenic
AATCAAGTGATTGATTCAAA+TGG	0.439888	7:+50835715	MsaT037052.1:CDS
ACATTTCGAGCAAACAAATT+GGG	0.449844	7:-50835589	None:intergenic
GTGGGAAGAGGATTCATATA+TGG	0.450043	7:+50835420	MsaT037052.1:CDS
GGTCTATAGGTCGTGGGAAG+AGG	0.454401	7:+50835408	MsaT037052.1:CDS
TCAAGACTAAAGCGAAAGGA+TGG	0.483022	7:+50835248	MsaT037052.1:CDS
ACCATACTTAGCAGCATCAA+TGG	0.496537	7:-50835533	None:intergenic
AAAGTCAGCTCATTCATGCT+TGG	0.503473	7:-50835673	None:intergenic
TTCACAAGGTCTATAGGTCG+TGG	0.504274	7:+50835401	MsaT037052.1:CDS
AAGACGAAAGCATGTTATTG+TGG	0.528019	7:+50835745	MsaT037052.1:CDS
TCACAAATAAAACTTCCAAA+AGG	0.534102	7:-50835295	None:intergenic
CAAGACTAAAGCGAAAGGAT+GGG	0.536026	7:+50835249	MsaT037052.1:CDS
AGAAGCTTCAAGTGGTAAAG+AGG	0.539187	7:+50835477	MsaT037052.1:CDS
CCCTCCACTCTTAAGAGCAC+AGG	0.546581	7:-50835176	None:intergenic
CTAAGTATGGTAACGTGGCA+AGG	0.558339	7:+50835545	MsaT037052.1:CDS
ATTGATGATCGATGTGATAG+TGG	0.558469	7:+50835502	MsaT037052.1:CDS
TCCTGTGCTCTTAAGAGTGG+AGG	0.560747	7:+50835175	MsaT037052.1:CDS
ACTATCACATCGATCATCAA+TGG	0.565161	7:-50835500	None:intergenic
AAGACTAAAGCGAAAGGATG+GGG	0.572218	7:+50835250	MsaT037052.1:CDS
AGGTGAGATTATTAAAGATG+AGG	0.588805	7:+50835324	MsaT037052.1:CDS
AAATCTCATCAATACAATGA+CGG	0.591760	7:-50835782	None:intergenic
TGTTCCTGTGCTCTTAAGAG+TGG	0.599372	7:+50835172	MsaT037052.1:CDS
CCTGTGCTCTTAAGAGTGGA+GGG	0.600581	7:+50835176	MsaT037052.1:CDS
ATGATCGATGTGATAGTGGT+AGG	0.614728	7:+50835506	MsaT037052.1:CDS
TCACAAGGTCTATAGGTCGT+GGG	0.621148	7:+50835402	MsaT037052.1:CDS
TATTAGCAATTATATTCACA+AGG	0.626162	7:+50835387	MsaT037052.1:CDS
TTTGCGATGATGATGATCTG+AGG	0.630579	7:+50835614	MsaT037052.1:CDS
CAACCATTAGAAGCTTCAAG+TGG	0.650083	7:+50835469	MsaT037052.1:CDS
GCTGCATATAGCATGATGTG+TGG	0.717627	7:-50835640	None:intergenic
TGCTGCTAAGTATGGTAACG+TGG	0.728265	7:+50835540	MsaT037052.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50835166	50835938	50835166	ID=MsaG037052
Chr7	mRNA	50835166	50835938	50835166	ID=MsaT037052.1;Parent=MsaG037052
Chr7	exon	50835166	50835814	50835166	ID=MsaT037052.1.exon1;Parent=MsaT037052.1
Chr7	CDS	50835166	50835814	50835166	ID=cds.MsaT037052.1;Parent=MsaT037052.1
Chr7	exon	50835910	50835938	50835910	ID=MsaT037052.1.exon2;Parent=MsaT037052.1
Chr7	CDS	50835910	50835938	50835910	ID=cds.MsaT037052.1;Parent=MsaT037052.1

Gene Sequence

>MsaT037052.1

ATGAAATGTTCCTGTGCTCTTAAGAGTGGAGGGAGAATTCCTAGAGTAAAGAAAAATCAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAAGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTTTGGAAGTTTTATTTGTGAGTATCTAGGTGAGATTATTAAAGATGAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTAGCAATTATATTCACAAGGTCTATAGGTCGTGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCATTAGAAGCTTCAAGTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACCATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTGCGATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCAAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCAATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTACAATGCATCCGTCATTGTATTGATGAGATTTTTTCGAAAAGGTGATATTCAAGCTGTCTTTGTTCAGTAG

Protein sequence

>MsaT037052.1

MKCSCALKSGGRIPRVKKNQIKFKLQIFKTKAKGWGVRSENAIPFGSFICEYLGEIIKDEEALKIVDNDEYLFNISNYIHKVYRSWEEDSYMVDSKEMSSYQPLEASSGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLCDDDDLRIPHIMLYAAENIPSMNELTLNYNYKINQVIDSNGNLKTKACYCGAYNASVIVLMRFFRKGDIQAVFVQ*