AlfalfaGEDB | MsaG037057

M. sativa ssp. caerulea / MsaG037057

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037057	XP_013448355.1	70.270	185	17	2	1	148	1	184	1.29e-83	253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037057	sp\|O49743\|GATA4_ARATH	56.452	62	27	0	84	145	158	219	3.55e-19	83.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037057	tr\|A0A072TYA0\|A0A072TYA0_MEDTR	70.270	185	17	2	1	148	1	184	6.17e-84	253

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037057	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037057	MtrunA17_Chr7g0232681	66.327	196	18	2	1	148	1	196	9.61e-87	251
MsaG037057	MtrunA17_Chr7g0232701	63.043	138	13	2	48	148	1	137	9.48e-53	164
MsaG037057	MtrunA17_Chr7g0232671	70.130	77	23	0	73	149	176	252	1.45e-33	118
MsaG037057	MtrunA17_Chr3g0145121	55.224	67	28	1	83	147	214	280	3.13e-19	82.0
MsaG037057	MtrunA17_Chr4g0035891	53.846	65	30	0	81	145	208	272	3.94e-19	81.6
MsaG037057	MtrunA17_Chr3g0140331	59.016	61	25	0	84	144	253	313	4.58e-19	82.0
MsaG037057	MtrunA17_Chr2g0326771	52.857	70	33	0	83	152	215	284	9.93e-19	80.5
MsaG037057	MtrunA17_Chr6g0461591	45.455	88	46	1	65	152	175	260	1.22e-18	79.7
MsaG037057	MtrunA17_Chr4g0028961	56.452	62	27	0	84	145	232	293	1.24e-18	80.5
MsaG037057	MtrunA17_Chr1g0199671	53.731	67	31	0	84	150	242	308	2.96e-18	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037057	AT3G60530.1	56.452	62	27	0	84	145	158	219	3.61e-20	83.6
MsaG037057	AT5G25830.1	57.143	63	27	0	83	145	218	280	8.44e-20	84.3
MsaG037057	AT2G45050.1	54.839	62	28	0	84	145	179	240	1.05e-19	82.8
MsaG037057	AT4G36240.1	30.102	196	85	6	2	145	30	225	1.47e-19	82.0
MsaG037057	AT4G32890.1	56.452	62	27	0	84	145	197	258	4.54e-19	82.0
MsaG037057	AT3G54810.1	50.633	79	38	1	73	150	217	295	1.66e-18	80.5
MsaG037057	AT3G54810.2	50.633	79	38	1	73	150	217	295	1.66e-18	80.5
MsaG037057	AT4G34680.1	33.121	157	62	3	27	145	90	241	1.78e-18	79.7
MsaG037057	AT4G34680.2	33.121	157	62	3	27	145	90	241	1.78e-18	79.7
MsaG037057	AT1G08000.2	56.716	67	27	1	84	148	218	284	1.79e-18	80.5

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Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTCTGATGATGATTA+GGG	0.356028	7:+50920566	None:intergenic
AACATGAAGTGGGTCAGTTC+TGG	0.366216	7:-50921252	MsaT037057.1:CDS
AAGAAGGCGATGAGAAAGGA+AGG	0.572140	7:-50920376	MsaT037057.1:CDS
AAGCTAAATGGATTGGTTAA+AGG	0.267058	7:-50920454	MsaT037057.1:CDS
AATACTTTGTGCAATGCATG+TGG	0.615784	7:-50920487	MsaT037057.1:CDS
AATGGAGGTTGGGTCCTTTG+GGG	0.535179	7:-50920513	MsaT037057.1:CDS
ACACAAGAAGGCGATGAGAA+AGG	0.520810	7:-50920380	MsaT037057.1:CDS
ACAGGAGGCACTAGAAAATT+TGG	0.257280	7:-50920707	MsaT037057.1:CDS
ACGATACAAGCTAAATGGAT+TGG	0.515501	7:-50920461	MsaT037057.1:CDS
AGAAACTACTCAATGGAGGT+TGG	0.521850	7:-50920524	MsaT037057.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50920360	50921308	50920360	ID=MsaG037057
Chr7	mRNA	50920360	50921308	50920360	ID=MsaT037057.1;Parent=MsaG037057
Chr7	exon	50920360	50920748	50920360	ID=MsaT037057.1.exon2;Parent=MsaT037057.1
Chr7	CDS	50920360	50920748	50920360	ID=cds.MsaT037057.1;Parent=MsaT037057.1
Chr7	exon	50921236	50921308	50921236	ID=MsaT037057.1.exon1;Parent=MsaT037057.1
Chr7	CDS	50921236	50921308	50921236	ID=cds.MsaT037057.1;Parent=MsaT037057.1

Gene Sequence

>MsaT037057.1

ATGGCTAATCAGAGAGAAGAACAAGATTTGAGTAAACATGAAGTGGGTCAGTTCTGGCAATCCTCATCTTTGGGGGATCTTGATTATATCCCACAGGAGGCACTAGAAAATTTGGAATGGTACACTACTTTTTGGGATGACATGGAGAATTTAGAAAAGGTCATCAAATTGGATGAATTAATGGGTAAGAGAAAAACACAAGAAAATCCATCTTTCAATATTGATACAAGTGTCCCTAATCATCATCAGAGAATTTGCAGCGATTGTGAGACCAAAGAAACTACTCAATGGAGGTTGGGTCCTTTGGGGAAGAATACTTTGTGCAATGCATGTGGATTACGATACAAGCTAAATGGATTGGTTAAAGGGTATAGACCTAAGGCAAGTCCAGCTTTTGATATCAGAAATCATTCAAATTTACACAAGAAGGCGATGAGAAAGGAAGGAAAAACAATCATTTAG

Protein sequence

>MsaT037057.1

MANQREEQDLSKHEVGQFWQSSSLGDLDYIPQEALENLEWYTTFWDDMENLEKVIKLDELMGKRKTQENPSFNIDTSVPNHHQRICSDCETKETTQWRLGPLGKNTLCNACGLRYKLNGLVKGYRPKASPAFDIRNHSNLHKKAMRKEGKTII*